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Conserved domains on  [gi|1275874105|gb|ATU74732|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Formosatettix qinlingensis]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009596)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 4-116 2.19e-29

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 102.16  E-value: 2.19e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874105   4 MMTITFLISLILPMIMMMLSMMISKKTISDREKSSPFECGFNPKTHARLPFSIQFFLISMLFLIFDVEIALIIPLIPIMK 83
Cdd:MTH00161    1 MILIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1275874105  84 TSSIKFWWISTSMFIIILLMGIYYEWNQGMLKW 116
Cdd:MTH00161   81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
 
Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 4-116 2.19e-29

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 102.16  E-value: 2.19e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874105   4 MMTITFLISLILPMIMMMLSMMISKKTISDREKSSPFECGFNPKTHARLPFSIQFFLISMLFLIFDVEIALIIPLIPIMK 83
Cdd:MTH00161    1 MILIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1275874105  84 TSSIKFWWISTSMFIIILLMGIYYEWNQGMLKW 116
Cdd:MTH00161   81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
33-115 6.59e-20

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 77.46  E-value: 6.59e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874105  33 DREKSSPFECGFNPKTHARLPFSIQFFLISMLFLIFDVEIALIIPLIPIMKTSSIkFWWISTSMFIIILLMGIYYEWNQG 112
Cdd:pfam00507  13 NPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGW-FGFVEMLIFIAILLVGLVYAWKKG 91


                  ...
gi 1275874105 113 MLK 115
Cdd:pfam00507  92 ALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 33-116 5.97e-17

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 70.54  E-value: 5.97e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874105  33 DREKSSPFECGFNPKTHARLPFSIQFFLISMLFLIFDVEIALIIPLIPIMKTSSIkFWWISTSMFIIILLMGIYYEWNQG 112
Cdd:COG0838    35 NPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFRELGW-FGLIEMLVFIAILLVGLIYAWKKG 113


                  ....
gi 1275874105 113 MLKW 116
Cdd:COG0838   114 ALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 4-116 2.19e-29

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 102.16  E-value: 2.19e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874105   4 MMTITFLISLILPMIMMMLSMMISKKTISDREKSSPFECGFNPKTHARLPFSIQFFLISMLFLIFDVEIALIIPLIPIMK 83
Cdd:MTH00161    1 MILIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1275874105  84 TSSIKFWWISTSMFIIILLMGIYYEWNQGMLKW 116
Cdd:MTH00161   81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 3-117 1.69e-27

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 97.24  E-value: 1.69e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874105   3 SMMTITFLISLILPMIMMMLSMMISKKTISDREKSSPFECGFNPKTHARLPFSIQFFLISMLFLIFDVEIALIIPLIPIM 82
Cdd:MTH00148    2 LSILLSLLFALILSPVLLLLGLVLSKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQSL 81

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1275874105  83 KTSSIKFWWISTSMFIIILLMGIYYEWNQGMLKWA 117
Cdd:MTH00148   82 GSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWV 116
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 2-118 3.62e-25

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 91.46  E-value: 3.62e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874105   2 ISMMTITFLISLILPMIMMMLSMMISKKTISDREKSSPFECGFNPKTHARLPFSIQFFLISMLFLIFDVEIALIIPLIPI 81
Cdd:MTH00012    1 MSLMMIPMMISLILPPLVLGAAWVLAARSTADREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTI 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1275874105  82 MKTSSIKFWWISTSMFIIILLMGIYYEWNQGMLKWAT 118
Cdd:MTH00012   81 LMTSTSKTVVYTSILFLLILVIGLIHEWREGSLDWSS 117
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 4-117 6.81e-25

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 90.82  E-value: 6.81e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874105   4 MMTITF--LISLILPMIMMMLSMMISKKTISDREKSSPFECGFNPKTHARLPFSIQFFLISMLFLIFDVEIALIIPLIPI 81
Cdd:MTH00202    1 MLLILFmsILSILISSLLFLVSWMLSFRSLMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLV 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1275874105  82 MKTSSIKFWWISTSMFIIILLMGIYYEWNQGMLKWA 117
Cdd:MTH00202   81 LKSSWSKGGLLGGTIFLLILIGGLIHEWKEGSLDWV 116
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 1-117 2.37e-21

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 81.85  E-value: 2.37e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874105   1 MISMMTITFLISLILpmimmMLSMMISKKTISDREKSSPFECGFNPKTHARLPFSIQFFLISMLFLIFDVEIALIIPLIP 80
Cdd:MTH00113    3 LISMLTISLALSTIL-----TTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPW 77

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1275874105  81 IMKTSSIKFWWISTSMFIIILLMGIYYEWNQGMLKWA 117
Cdd:MTH00113   78 AINLTTPTTTLTWATIILTLLTLGLIYEWLQGGLEWA 114
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 4-117 3.30e-21

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 81.57  E-value: 3.30e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874105   4 MMTITFLISLILPMIMMMLSMMISKKTISDREKSSPFECGFNPKTHARLPFSIQFFLISMLFLIFDVEIALIIPLIPIMK 83
Cdd:MTH00042    2 TNLIFFLLIILILTSLLLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPATL 81

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1275874105  84 TSSIKFWWISTSMFIIILLMGIYYEWNQGMLKWA 117
Cdd:MTH00042   82 ITNPSTLLPISLIFLIILTIGLVYEWVNGGLEWA 115
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 1-116 1.77e-20

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 79.56  E-value: 1.77e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874105   1 MISMMTITFLISLILpmimmMLSMMISKKTISDREKSSPFECGFNPKTHARLPFSIQFFLISMLFLIFDVEIALIIPLIP 80
Cdd:MTH00203    4 IMLFFLIALLLSLIL-----LFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPW 78

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1275874105  81 IMKTSSIKFWWIstSMFIIILLMGIYYEWNQGMLKW 116
Cdd:MTH00203   79 SNQLSSLSLLLA--FLFLILLTLGLIYEWLQGGLEW 112
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
33-115 6.59e-20

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 77.46  E-value: 6.59e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874105  33 DREKSSPFECGFNPKTHARLPFSIQFFLISMLFLIFDVEIALIIPLIPIMKTSSIkFWWISTSMFIIILLMGIYYEWNQG 112
Cdd:pfam00507  13 NPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGW-FGFVEMLIFIAILLVGLVYAWKKG 91


                  ...
gi 1275874105 113 MLK 115
Cdd:pfam00507  92 ALE 94
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-117 1.54e-19

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 77.27  E-value: 1.54e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874105   1 MISMMTITFLISLILpmimmMLSMMISKKTISDREKSSPFECGFNPKTHARLPFSIQFFLISMLFLIFDVEIALIIPLIP 80
Cdd:MTH00136    4 ITTILTITIALSLIL-----AIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPW 78

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1275874105  81 IMKTSSIKFWWISTSMFIIILLMGIYYEWNQGMLKWA 117
Cdd:MTH00136   79 GDQLPSPLLTFFWATAVLILLTLGLIYEWLQGGLEWA 115
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 1-117 4.39e-19

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 75.80  E-value: 4.39e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874105   1 MISMMTITFLISLILPMIMMMLSMMIskktiSDREKSSPFECGFNPKTHARLPFSIQFFLISMLFLIFDVEIALIIPLIP 80
Cdd:MTH00069    2 IMLMLLISTILSLILITISFWLPLNN-----PDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPW 76

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1275874105  81 IMKTSSIKFWWISTSMFIIILLMGIYYEWNQGMLKWA 117
Cdd:MTH00069   77 ASQLNTPTNTLFWSTLILILLTLGLIYEWIQGGLEWA 113
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 35-117 9.16e-19

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 74.98  E-value: 9.16e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874105  35 EKSSPFECGFNPKTHARLPFSIQFFLISMLFLIFDVEIALIIPLIPIMKTSSIKFWWISTSMFIIILLMGIYYEWNQGML 114
Cdd:MTH00106   32 EKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTNNLNTMLTMALLLISLLALSLAYEWTQKGL 111


                  ...
gi 1275874105 115 KWA 117
Cdd:MTH00106  112 EWT 114
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 33-116 5.97e-17

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 70.54  E-value: 5.97e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874105  33 DREKSSPFECGFNPKTHARLPFSIQFFLISMLFLIFDVEIALIIPLIPIMKTSSIkFWWISTSMFIIILLMGIYYEWNQG 112
Cdd:COG0838    35 NPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFRELGW-FGLIEMLVFIAILLVGLIYAWKKG 113


                  ....
gi 1275874105 113 MLKW 116
Cdd:COG0838   114 ALEW 117
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 33-117 6.23e-17

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 70.66  E-value: 6.23e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874105  33 DREKSSPFECGFNPKTHARLPFSIQFFLISMLFLIFDVEIALIIPLIPIMKTSSiKFWWISTSMFIIILLMGIYYEWNQG 112
Cdd:PRK06602   38 DREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLFPWAVSFREIG-WLGFVEAMIFILVLLVGLVYLWRKG 116


                  ....*
gi 1275874105 113 MLKWA 117
Cdd:PRK06602  117 ALDWE 121
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 33-116 1.36e-13

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 62.00  E-value: 1.36e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874105  33 DREKSSPFECGFNPKTHARLPFSIQFFLISMLFLIFDVEIALIIPLIPIMKTSSIKFWWIsTSMFIIILLMGIYYEWNQG 112
Cdd:MTH00018   30 DREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLYNQIAPFGFWT-MVGFLFILTLGLIYEWIKG 108


                  ....
gi 1275874105 113 MLKW 116
Cdd:MTH00018  109 GLEW 112
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 33-116 2.58e-13

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 61.26  E-value: 2.58e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874105  33 DREKSSPFECGFNPKTHARLPFSIQFFLISMLFLIFDVEIALIIPLIPIMKTSSIKFWWIsTSMFIIILLMGIYYEWNQG 112
Cdd:MTH00055   35 DSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVVYNQIGLFGFWV-MYLFLIILTIGLIYEWVKG 113


                  ....
gi 1275874105 113 MLKW 116
Cdd:MTH00055  114 GLEW 117
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 30-116 3.81e-12

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 58.41  E-value: 3.81e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874105  30 TISDREKSSPFECGFNPKTHARLPFSIQFFLISMLFLIFDVEIALIIPLIPIMKTSSIKFWWISTSmFIIILLMGIYYEW 109
Cdd:MTH00030   37 TKPDSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWSIVFNQLNLFSFWIVYT-FLIVLAIGLAYEW 115


                  ....*..
gi 1275874105 110 NQGMLKW 116
Cdd:MTH00030  116 IKGGLEW 122
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
33-116 2.47e-07

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 45.89  E-value: 2.47e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874105  33 DREKSSPFECGFNPKTHARLPFSIQFFLISMLFLIFDVEIALIIPLIPIMKTSSIkFWWISTSMFIIILLMGIYYEWNQG 112
Cdd:PRK07756   39 SAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYPWAVAYDKLGL-FALIEMLIFVVMLLVGLAYAWKKK 117


                  ....
gi 1275874105 113 MLKW 116
Cdd:PRK07756  118 VLQW 121
ndhC CHL00022
NADH dehydrogenase subunit 3
 35-116 6.56e-07

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 44.59  E-value: 6.56e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874105  35 EKSSPFECGFNPKTHARLPFSIQFFLISMLFLIFDVEIALIIPLIPIMKTSSIkFWWISTSMFIIILLMGIYYEWNQGML 114
Cdd:CHL00022   39 EKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV-SAFIEALIFVLILIVGLVYAWRKGAL 117


                  ..
gi 1275874105 115 KW 116
Cdd:CHL00022  118 EW 119
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
36-116 3.60e-06

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 42.73  E-value: 3.60e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874105  36 KSSPFECGFNPKTHARlPFSIQFFLISMLFLIFDVEIALIIPLIPIMKTSSIkFWWISTSMFIIILLMGIYYEWNQGMLK 115
Cdd:PRK08489   47 KLAIYECGPEPVKQPN-RISSHFYIMALLFILFDVEIVFMFPWAVDFKLLGL-FGLIEMLLFIVLLTIGFIYAWKKGALE 124


                  .
gi 1275874105 116 W 116
Cdd:PRK08489  125 W 125
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 33-116 1.85e-05

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 40.81  E-value: 1.85e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874105  33 DREKSSPFECGFNPKTHARLP--FSIQFFLISMLFLIFDVEIALIIPLIPIMKTSSIkFWWISTSMFIIILLMGIYYEWN 110
Cdd:PRK07928   34 NRAKLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFLYPWAVSFDALGV-FGLVEMALFMLTVFVAYAYVWR 112


                  ....*.
gi 1275874105 111 QGMLKW 116
Cdd:PRK07928  113 RGGLEW 118
PRK06432 PRK06432
NADH dehydrogenase subunit A; Validated
 32-116 2.64e-04

NADH dehydrogenase subunit A; Validated


Pssm-ID: 102372  Cd Length: 144  Bit Score: 37.87  E-value: 2.64e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874105  32 SDREKSSPFECGFNPKTHARLPFSIQFFLISMLFLIFDVEIALIIPLIPIMKT-SSIKFwwISTSMFIIILLMGIYYEWN 110
Cdd:PRK06432   59 SDQSYLEPYESGEVAREIWGGPSINQYYIVVLLFVVFDVDMLLLFPWAFDFKRlGLIPF--IETLIFLAMPLFAVYYAFK 136


                  ....*.
gi 1275874105 111 QGMLKW 116
Cdd:PRK06432  137 MGYMRW 142
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 4-116 4.04e-03

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 34.48  E-value: 4.04e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874105   4 MMTITFLISLILPMIMMMLSMMISKKTiSDREKSSPFECGFNPKTHARLPFSIQFFLISMLFLIFDVEIALIIPLIPIMK 83
Cdd:MTH00092    3 VLIFVFLFTLLLLMLLYLLNFFLSVKK-FDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFLGLLVSDF 81

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1275874105  84 TSSIKFWwistsMFIIILLMGIYYEWNQGMLKW 116
Cdd:MTH00092   82 SSLISFF-----MLMIFIFFGFYMEWWYGKLIW 109
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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