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Conserved domains on  [gi|1278383253|gb|ATW63508|]
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capsid protein, partial [Astrovirus VA1]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Astro_capsid_N super family cl46880
Astrovirus capsid protein precursor; This product is encoded by astrovirus ORF2, one of the ...
8-232 3.90e-55

Astrovirus capsid protein precursor; This product is encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The 87kD precursor protein undergoes an intracellular cleavage to form a 79kD protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion.


The actual alignment was detected with superfamily member pfam03115:

Pssm-ID: 481220  Cd Length: 431  Bit Score: 181.94  E-value: 3.90e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278383253   8 QALPKAAAKQIAKEVVKQEKKepVVRKKKQFYPNPKFNNRFNKKFVKKQ-LDKNLK--KQGFEGPKPRFAVTVSATIGKV 84
Cdd:pfam03115   2 KAGPKAQARSQSRGRDKKCKI--TTNSRNKAKRQPGKDKQQKPQKVRLNiVEKQLKtlKAGTRGPKIADCFRATATLGRI 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278383253  85 GPNKSQGPELQISTFMHPSLMKEPNDGTNFGPLQSAAAQWGLWRLKNLSVTFTPLVGPSAVTGSVFRISLN-MAQSPGAT 163
Cdd:pfam03115  80 GGNNDDSLEIEACIFLNPLLMKDADGGSQFGPLQALAAQYGLWKIAKLHVKFTPLAGAAAVIGTVSFASLEpESGTATAE 159
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1278383253 164 SWGGLGARKHKDVAVGKQFTWKLQKGDLTGPRETWWLTDTNEEGAQSCGPLLEIHGLGETT---STYKDAAW 232
Cdd:pfam03115 160 SPDGIGAKKHADVPIGKNATFKLKPRDLGGPRDGWWLMDSGDDASDSLGPSIEFHTLGKTIlalSSAKNEQF 231
 
Name Accession Description Interval E-value
Astro_capsid_N pfam03115
Astrovirus capsid protein precursor; This product is encoded by astrovirus ORF2, one of the ...
8-232 3.90e-55

Astrovirus capsid protein precursor; This product is encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The 87kD precursor protein undergoes an intracellular cleavage to form a 79kD protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion.


Pssm-ID: 367340  Cd Length: 431  Bit Score: 181.94  E-value: 3.90e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278383253   8 QALPKAAAKQIAKEVVKQEKKepVVRKKKQFYPNPKFNNRFNKKFVKKQ-LDKNLK--KQGFEGPKPRFAVTVSATIGKV 84
Cdd:pfam03115   2 KAGPKAQARSQSRGRDKKCKI--TTNSRNKAKRQPGKDKQQKPQKVRLNiVEKQLKtlKAGTRGPKIADCFRATATLGRI 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278383253  85 GPNKSQGPELQISTFMHPSLMKEPNDGTNFGPLQSAAAQWGLWRLKNLSVTFTPLVGPSAVTGSVFRISLN-MAQSPGAT 163
Cdd:pfam03115  80 GGNNDDSLEIEACIFLNPLLMKDADGGSQFGPLQALAAQYGLWKIAKLHVKFTPLAGAAAVIGTVSFASLEpESGTATAE 159
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1278383253 164 SWGGLGARKHKDVAVGKQFTWKLQKGDLTGPRETWWLTDTNEEGAQSCGPLLEIHGLGETT---STYKDAAW 232
Cdd:pfam03115 160 SPDGIGAKKHADVPIGKNATFKLKPRDLGGPRDGWWLMDSGDDASDSLGPSIEFHTLGKTIlalSSAKNEQF 231
 
Name Accession Description Interval E-value
Astro_capsid_N pfam03115
Astrovirus capsid protein precursor; This product is encoded by astrovirus ORF2, one of the ...
8-232 3.90e-55

Astrovirus capsid protein precursor; This product is encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The 87kD precursor protein undergoes an intracellular cleavage to form a 79kD protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion.


Pssm-ID: 367340  Cd Length: 431  Bit Score: 181.94  E-value: 3.90e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278383253   8 QALPKAAAKQIAKEVVKQEKKepVVRKKKQFYPNPKFNNRFNKKFVKKQ-LDKNLK--KQGFEGPKPRFAVTVSATIGKV 84
Cdd:pfam03115   2 KAGPKAQARSQSRGRDKKCKI--TTNSRNKAKRQPGKDKQQKPQKVRLNiVEKQLKtlKAGTRGPKIADCFRATATLGRI 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278383253  85 GPNKSQGPELQISTFMHPSLMKEPNDGTNFGPLQSAAAQWGLWRLKNLSVTFTPLVGPSAVTGSVFRISLN-MAQSPGAT 163
Cdd:pfam03115  80 GGNNDDSLEIEACIFLNPLLMKDADGGSQFGPLQALAAQYGLWKIAKLHVKFTPLAGAAAVIGTVSFASLEpESGTATAE 159
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1278383253 164 SWGGLGARKHKDVAVGKQFTWKLQKGDLTGPRETWWLTDTNEEGAQSCGPLLEIHGLGETT---STYKDAAW 232
Cdd:pfam03115 160 SPDGIGAKKHADVPIGKNATFKLKPRDLGGPRDGWWLMDSGDDASDSLGPSIEFHTLGKTIlalSSAKNEQF 231
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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