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Conserved domains on  [gi|1375632521|gb|AVW81362|]
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nuclear protein UL3 [Felid alphaherpesvirus 1]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Herpes_UL3 super family cl04029
Herpesvirus UL3 protein;
63-195 3.90e-74

Herpesvirus UL3 protein;


The actual alignment was detected with superfamily member pfam03369:

Pssm-ID: 281377  Cd Length: 135  Bit Score: 219.80  E-value: 3.90e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375632521  63 FDTLFMVSSIDELGRRQLTDTIRKDLRMTLAKFSIACTKTSSFSSACATRRKRHANSRGGREFRSNKSLQMFVLCRKAHS 142
Cdd:pfam03369   2 FDTLFMVSSIDELGRRQLTDTIRRDLRMSLAKFTIACTKTSSFSGRGASRQKRVTLSKRTFNPSSNKSLQMFVLCQRAHA 81
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1375632521 143 KQIRAQIQSVIQARKPRKYYTRSSDGRTHPVVPVYIYEFSAVDRVFLHKDNVI 195
Cdd:pfam03369  82 PRVRNQLYAVIRARKPRKYYTRSTDGKSRPLVPVFVYEFTALDRVLLHRDNVL 134
 
Name Accession Description Interval E-value
Herpes_UL3 pfam03369
Herpesvirus UL3 protein;
63-195 3.90e-74

Herpesvirus UL3 protein;


Pssm-ID: 281377  Cd Length: 135  Bit Score: 219.80  E-value: 3.90e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375632521  63 FDTLFMVSSIDELGRRQLTDTIRKDLRMTLAKFSIACTKTSSFSSACATRRKRHANSRGGREFRSNKSLQMFVLCRKAHS 142
Cdd:pfam03369   2 FDTLFMVSSIDELGRRQLTDTIRRDLRMSLAKFTIACTKTSSFSGRGASRQKRVTLSKRTFNPSSNKSLQMFVLCQRAHA 81
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1375632521 143 KQIRAQIQSVIQARKPRKYYTRSSDGRTHPVVPVYIYEFSAVDRVFLHKDNVI 195
Cdd:pfam03369  82 PRVRNQLYAVIRARKPRKYYTRSTDGKSRPLVPVFVYEFTALDRVLLHRDNVL 134
 
Name Accession Description Interval E-value
Herpes_UL3 pfam03369
Herpesvirus UL3 protein;
63-195 3.90e-74

Herpesvirus UL3 protein;


Pssm-ID: 281377  Cd Length: 135  Bit Score: 219.80  E-value: 3.90e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375632521  63 FDTLFMVSSIDELGRRQLTDTIRKDLRMTLAKFSIACTKTSSFSSACATRRKRHANSRGGREFRSNKSLQMFVLCRKAHS 142
Cdd:pfam03369   2 FDTLFMVSSIDELGRRQLTDTIRRDLRMSLAKFTIACTKTSSFSGRGASRQKRVTLSKRTFNPSSNKSLQMFVLCQRAHA 81
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1375632521 143 KQIRAQIQSVIQARKPRKYYTRSSDGRTHPVVPVYIYEFSAVDRVFLHKDNVI 195
Cdd:pfam03369  82 PRVRNQLYAVIRARKPRKYYTRSTDGKSRPLVPVFVYEFTALDRVLLHRDNVL 134
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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