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Conserved domains on  [gi|1384218918|gb|AWE05672|]
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cytochrome b, partial (mitochondrion) [Alexandromys evoronensis]

Protein Classification

cytochrome b( domain architecture ID 11475898)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-346 0e+00

cytochrome b; Provisional


:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 712.95  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918   1 NHSFIDLPAPSNISSWWNFGSLLGLCLIIQILTGLFLAMHYTSDTSTAFSSVAHICRDVNYGWLIRYMHANGASMFFICL 80
Cdd:MTH00100   15 NHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICL 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918  81 FLHVGRGIYYGSYNMIETWNMGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKAT 160
Cdd:MTH00100   95 FLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKAT 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918 161 LTRFFAFHFILPFIIAALVFVHLLFLHETGSNNPTGLNSDTDKIPFHPYYTVKDFLGALILLMVFMILALFFPDVLGDPD 240
Cdd:MTH00100  175 LTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPD 254

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918 241 NFTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALMPMLHTSKQRALTFRPITQTMYWVLVADLFT 320
Cdd:MTH00100  255 NYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLT 334

                         330       340
                  ....*....|....*....|....*.
gi 1384218918 321 LTWIGGQPVEYPFIIIGQVASVAYFT 346
Cdd:MTH00100  335 LTWIGGQPVEHPFIIIGQLASILYFL 360
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-346 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 712.95  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918   1 NHSFIDLPAPSNISSWWNFGSLLGLCLIIQILTGLFLAMHYTSDTSTAFSSVAHICRDVNYGWLIRYMHANGASMFFICL 80
Cdd:MTH00100   15 NHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICL 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918  81 FLHVGRGIYYGSYNMIETWNMGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKAT 160
Cdd:MTH00100   95 FLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKAT 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918 161 LTRFFAFHFILPFIIAALVFVHLLFLHETGSNNPTGLNSDTDKIPFHPYYTVKDFLGALILLMVFMILALFFPDVLGDPD 240
Cdd:MTH00100  175 LTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPD 254

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918 241 NFTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALMPMLHTSKQRALTFRPITQTMYWVLVADLFT 320
Cdd:MTH00100  255 NYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLT 334

                         330       340
                  ....*....|....*....|....*.
gi 1384218918 321 LTWIGGQPVEYPFIIIGQVASVAYFT 346
Cdd:MTH00100  335 LTWIGGQPVEHPFIIIGQLASILYFL 360
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
2-345 2.28e-128

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 372.59  E-value: 2.28e-128
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918   2 HSFIDLPAPSNISSWWNFGSLLGLCLIIQILTGLFLAMHYTSDTSTAFSSVAHICRDVNYGWLIRYMHANGASMFFICLF 81
Cdd:COG1290    25 REHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVY 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918  82 LHVGRGIYYGSY------NmietWNMGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFS 155
Cdd:COG1290   105 LHMFRGFFYGAYkkprelN----WIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEF 180

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918 156 VDKATLTRFFAFH-FILPFIIAALVFVHLLFLHETGSNNPTG----LNSDTDKIPFHPYYTVKDFLGALILLMVFMILAL 230
Cdd:COG1290   181 PGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAF 260

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918 231 FFPDvlGDPDNFTPANPLNTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALILSILILALMPMLHTSKQRALTFRPITQ 308
Cdd:COG1290   261 FFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRT 338

                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 1384218918 309 TMYWVLVADLFTLTWIGGQPVEYpfIIIGQVASVAYF 345
Cdd:COG1290   339 ALGVAFIVFFIVLTILGANPPIA--TLLGSINTVTYF 373
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-192 4.22e-95

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 281.18  E-value: 4.22e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918   1 NHSFIDLPAPSNISSWWNFGSLLGLCLIIQILTGLFLAMHYTSDTSTAFSSVAHICRDVNYGWLIRYMHANGASMFFICL 80
Cdd:cd00284     7 NNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLML 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918  81 FLHVGRGIYYGSYN--MIETWNMGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDK 158
Cdd:cd00284    87 YLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDN 166

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1384218918 159 ATLTRFFAFHFILPFIIAALVFVHLLFLHETGSN 192
Cdd:cd00284   167 ATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
4-190 3.20e-88

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 263.09  E-value: 3.20e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918   4 FIDLPAPSNISSWWNFGSLLGLCLIIQILTGLFLAMHYTSDTSTAFSSVAHICRDVNYGWLIRYMHANGASMFFICLFLH 83
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918  84 VGRGIYYG--SYNMIETWNMGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATL 161
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1384218918 162 TRFFAFHFILPFIIAALVFVHLLFLHETG 190
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 228-325 1.11e-07

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 50.95  E-value: 1.11e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918 228 LALFFPDVLGDPdnftpANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALMPMLHTSKQRALTF-RPI 306
Cdd:TIGR01156  54 LAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFrRPV 128

                          90
                  ....*....|....*....
gi 1384218918 307 TQTMYwvLVADLFTLtWIG 325
Cdd:TIGR01156 129 ATTVF--LFGTVVAL-WLG 144
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-346 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 712.95  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918   1 NHSFIDLPAPSNISSWWNFGSLLGLCLIIQILTGLFLAMHYTSDTSTAFSSVAHICRDVNYGWLIRYMHANGASMFFICL 80
Cdd:MTH00100   15 NHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICL 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918  81 FLHVGRGIYYGSYNMIETWNMGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKAT 160
Cdd:MTH00100   95 FLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKAT 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918 161 LTRFFAFHFILPFIIAALVFVHLLFLHETGSNNPTGLNSDTDKIPFHPYYTVKDFLGALILLMVFMILALFFPDVLGDPD 240
Cdd:MTH00100  175 LTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPD 254

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918 241 NFTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALMPMLHTSKQRALTFRPITQTMYWVLVADLFT 320
Cdd:MTH00100  255 NYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLT 334

                         330       340
                  ....*....|....*....|....*.
gi 1384218918 321 LTWIGGQPVEYPFIIIGQVASVAYFT 346
Cdd:MTH00100  335 LTWIGGQPVEHPFIIIGQLASILYFL 360
CYTB MTH00119
cytochrome b; Provisional
 1-346 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 650.81  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918   1 NHSFIDLPAPSNISSWWNFGSLLGLCLIIQILTGLFLAMHYTSDTSTAFSSVAHICRDVNYGWLIRYMHANGASMFFICL 80
Cdd:MTH00119   16 NNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICI 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918  81 FLHVGRGIYYGSYNMIETWNMGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKAT 160
Cdd:MTH00119   96 YLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPT 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918 161 LTRFFAFHFILPFIIAALVFVHLLFLHETGSNNPTGLNSDTDKIPFHPYYTVKDFLGALILLMVFMILALFFPDVLGDPD 240
Cdd:MTH00119  176 LTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPE 255

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918 241 NFTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALMPMLHTSKQRALTFRPITQTMYWVLVADLFT 320
Cdd:MTH00119  256 NFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLI 335

                         330       340
                  ....*....|....*....|....*.
gi 1384218918 321 LTWIGGQPVEYPFIIIGQVASVAYFT 346
Cdd:MTH00119  336 LTWIGSQPVEHPFIIIGQLASILYFT 361
CYTB MTH00131
cytochrome b; Provisional
 1-346 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 644.01  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918   1 NHSFIDLPAPSNISSWWNFGSLLGLCLIIQILTGLFLAMHYTSDTSTAFSSVAHICRDVNYGWLIRYMHANGASMFFICL 80
Cdd:MTH00131   15 NDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICI 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918  81 FLHVGRGIYYGSYNMIETWNMGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKAT 160
Cdd:MTH00131   95 YLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNAT 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918 161 LTRFFAFHFILPFIIAALVFVHLLFLHETGSNNPTGLNSDTDKIPFHPYYTVKDFLGALILLMVFMILALFFPDVLGDPD 240
Cdd:MTH00131  175 LTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPD 254

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918 241 NFTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALMPMLHTSKQRALTFRPITQTMYWVLVADLFT 320
Cdd:MTH00131  255 NFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLI 334

                         330       340
                  ....*....|....*....|....*.
gi 1384218918 321 LTWIGGQPVEYPFIIIGQVASVAYFT 346
Cdd:MTH00131  335 LTWIGGMPVEHPFIIIGQVASVLYFS 360
CYTB MTH00074
cytochrome b; Provisional
 1-346 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 631.72  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918   1 NHSFIDLPAPSNISSWWNFGSLLGLCLIIQILTGLFLAMHYTSDTSTAFSSVAHICRDVNYGWLIRYMHANGASMFFICL 80
Cdd:MTH00074   16 NNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICI 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918  81 FLHVGRGIYYGSYNMIETWNMGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKAT 160
Cdd:MTH00074   96 YLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKAT 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918 161 LTRFFAFHFILPFIIAALVFVHLLFLHETGSNNPTGLNSDTDKIPFHPYYTVKDFLGALILLMVFMILALFFPDVLGDPD 240
Cdd:MTH00074  176 LTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPD 255

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918 241 NFTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALMPMLHTSKQRALTFRPITQTMYWVLVADLFT 320
Cdd:MTH00074  256 NFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLI 335

                         330       340
                  ....*....|....*....|....*.
gi 1384218918 321 LTWIGGQPVEYPFIIIGQVASVAYFT 346
Cdd:MTH00074  336 LTWIGGQPVEDPFIEIGQAASILYFL 361
CYTB MTH00191
cytochrome b; Provisional
 1-346 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 613.08  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918   1 NHSFIDLPAPSNISSWWNFGSLLGLCLIIQILTGLFLAMHYTSDTSTAFSSVAHICRDVNYGWLIRYMHANGASMFFICL 80
Cdd:MTH00191   12 NGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICI 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918  81 FLHVGRGIYYGSYNMIETWNMGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKAT 160
Cdd:MTH00191   92 YLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNAT 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918 161 LTRFFAFHFILPFIIAALVFVHLLFLHETGSNNPTGLNSDTDKIPFHPYYTVKDFLGALILLMVFMILALFFPDVLGDPD 240
Cdd:MTH00191  172 LTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPE 251

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918 241 NFTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALMPMLHTSKQRALTFRPITQTMYWVLVADLFT 320
Cdd:MTH00191  252 NFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFIL 331

                         330       340
                  ....*....|....*....|....*.
gi 1384218918 321 LTWIGGQPVEYPFIIIGQVASVAYFT 346
Cdd:MTH00191  332 LTWLGGQPVEDPFILLGQISSFLYFF 357
CYTB MTH00156
cytochrome b; Provisional
 1-345 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 608.32  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918   1 NHSFIDLPAPSNISSWWNFGSLLGLCLIIQILTGLFLAMHYTSDTSTAFSSVAHICRDVNYGWLIRYMHANGASMFFICL 80
Cdd:MTH00156    5 NNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICI 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918  81 FLHVGRGIYYGSYNMIETWNMGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKAT 160
Cdd:MTH00156   85 YLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNAT 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918 161 LTRFFAFHFILPFIIAALVFVHLLFLHETGSNNPTGLNSDTDKIPFHPYYTVKDFLGALILLMVFMILALFFPDVLGDPD 240
Cdd:MTH00156  165 LTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPE 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918 241 NFTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALMPMLHTSKQRALTFRPITQTMYWVLVADLFT 320
Cdd:MTH00156  245 NFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVIL 324

                         330       340
                  ....*....|....*....|....*
gi 1384218918 321 LTWIGGQPVEYPFIIIGQVASVAYF 345
Cdd:MTH00156  325 LTWIGARPVEEPYILTGQILTILYF 349
CYTB MTH00145
cytochrome b; Provisional
 1-345 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 576.86  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918   1 NHSFIDLPAPSNISSWWNFGSLLGLCLIIQILTGLFLAMHYTSDTSTAFSSVAHICRDVNYGWLIRYMHANGASMFFICL 80
Cdd:MTH00145   16 NGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICI 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918  81 FLHVGRGIYYGSYNMIETWNMGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKAT 160
Cdd:MTH00145   96 YLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNAT 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918 161 LTRFFAFHFILPFIIAALVFVHLLFLHETGSNNPTGLNSDTDKIPFHPYYTVKDFLGALILLMVFMILALFFPDVLGDPD 240
Cdd:MTH00145  176 LKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPE 255

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918 241 NFTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALMPMLHTSKQRALTFRPITQTMYWVLVADLFT 320
Cdd:MTH00145  256 NFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFI 335

                         330       340
                  ....*....|....*....|....*
gi 1384218918 321 LTWIGGQPVEYPFIIIGQVASVAYF 345
Cdd:MTH00145  336 LTWIGACPVEEPYETIGQVFTVLYF 360
CYTB MTH00034
cytochrome b; Validated
 1-345 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 574.73  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918   1 NHSFIDLPAPSNISSWWNFGSLLGLCLIIQILTGLFLAMHYTSDTSTAFSSVAHICRDVNYGWLIRYMHANGASMFFICL 80
Cdd:MTH00034   15 NSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICL 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918  81 FLHVGRGIYYGSYNMIETWNMGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKAT 160
Cdd:MTH00034   95 YFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNAT 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918 161 LTRFFAFHFILPFIIAALVFVHLLFLHETGSNNPTGLNSDTDKIPFHPYYTVKDFLGALILLMVFMILALFFPDVLGDPD 240
Cdd:MTH00034  175 LTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPE 254

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918 241 NFTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALMPMLHTSKQRALTFRPITQTMYWVLVADLFT 320
Cdd:MTH00034  255 NFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFI 334

                         330       340
                  ....*....|....*....|....*
gi 1384218918 321 LTWIGGQPVEYPFIIIGQVASVAYF 345
Cdd:MTH00034  335 LTWIGSQPVEYPFILLGQVASVLYF 359
CYTB MTH00016
cytochrome b; Validated
 1-346 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 547.35  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918   1 NHSFIDLPAPSNISSWWNFGSLLGLCLIIQILTGLFLAMHYTSDTSTAFSSVAHICRDVNYGWLIRYMHANGASMFFICL 80
Cdd:MTH00016   16 NGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICL 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918  81 FLHVGRGIYYGSYNMIETWNMGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKAT 160
Cdd:MTH00016   96 YLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNAT 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918 161 LTRFFAFHFILPFIIAALVFVHLLFLHETGSNNPTGLNSDTDKIPFHPYYTVKDFLGALILLMVFMILALFFPDVLGDPD 240
Cdd:MTH00016  176 LTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPE 255

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918 241 NFTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALMPMLHTSKQRALTFRPITQTMYWVLVADLFT 320
Cdd:MTH00016  256 NFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLL 335

                         330       340
                  ....*....|....*....|....*.
gi 1384218918 321 LTWIGGQPVEYPFIIIGQVASVAYFT 346
Cdd:MTH00016  336 LTWIGGRPVEPPYEFLGQIFTVFYFF 361
CYTB MTH00053
cytochrome b; Provisional
 1-345 2.62e-176

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 493.84  E-value: 2.62e-176
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918   1 NHSFIDLPAPSNISSWWNFGSLLGLCLIIQILTGLFLAMHYTSDTSTAFSSVAHICRDVNYGWLIRYMHANGASMFFICL 80
Cdd:MTH00053   16 NSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCV 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918  81 FLHVGRGIYYGSYNMIETWNMGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKAT 160
Cdd:MTH00053   96 YFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNAT 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918 161 LTRFFAFHFILPFIIAALVFVHLLFLHETGSNNPTGLNSDTDKIPFHPYYTVKDFLGALILLMVFMILALFFPDVLGDPD 240
Cdd:MTH00053  176 LNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAE 255

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918 241 NFTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALMPMLHTSKQRALTFRPITQTMYWVLVADLFT 320
Cdd:MTH00053  256 NFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFL 335

                         330       340
                  ....*....|....*....|....*
gi 1384218918 321 LTWIGGQPVEYPFIIIGQVASVAYF 345
Cdd:MTH00053  336 LTWIGGQPVEEPYILIGQIASIFYF 360
CYTB MTH00022
cytochrome b; Validated
 1-345 3.73e-175

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 491.14  E-value: 3.73e-175
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918   1 NHSFIDLPAPSNISSWWNFGSLLGLCLIIQILTGLFLAMHYTSDTSTAFSSVAHICRDVNYGWLIRYMHANGASMFFICL 80
Cdd:MTH00022   14 NGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCL 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918  81 FLHVGRGIYYGSYNMIETWNMGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKAT 160
Cdd:MTH00022   94 YIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNAT 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918 161 LTRFFAFHFILPFIIAALVFVHLLFLHETGSNNPTGLNSDTDKIPFHPYYTVKDFLGALILLMVFMILALFFPDVLGDPD 240
Cdd:MTH00022  174 LNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPE 253

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918 241 NFTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALMPMLHTSKQRALTFRPITQTMYWVLVADLFT 320
Cdd:MTH00022  254 NFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFIL 333

                         330       340
                  ....*....|....*....|....*
gi 1384218918 321 LTWIGGQPVEYPFIIIGQVASVAYF 345
Cdd:MTH00022  334 LTWIGSQVVEEPFILIGQLLSFFYF 358
CYTB MTH00224
cytochrome b; Provisional
 1-346 4.53e-174

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 488.28  E-value: 4.53e-174
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918   1 NHSFIDLPAPSNISSWWNFGSLLGLCLIIQILTGLFLAMHYTSDTSTAFSSVAHICRDVNYGWLIRYMHANGASMFFICL 80
Cdd:MTH00224   16 NGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFI 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918  81 FLHVGRGIYYGSYNMIETWNMGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKAT 160
Cdd:MTH00224   96 YLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNAT 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918 161 LTRFFAFHFILPFIIAALVFVHLLFLHETGSNNPTGLNSDTDKIPFHPYYTVKDFLGALILLMVFMILALFFPDVLGDPD 240
Cdd:MTH00224  176 LNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPE 255

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918 241 NFTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALMPMLHTSKQRALTFRPITQTMYWVLVADLFT 320
Cdd:MTH00224  256 NFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAI 335

                         330       340
                  ....*....|....*....|....*.
gi 1384218918 321 LTWIGGQPVEYPFIIIGQVASVAYFT 346
Cdd:MTH00224  336 LTWIGGRPVEDPFEGIGQVFTILYFS 361
CYTB MTH00033
cytochrome b; Provisional
 5-345 1.10e-136

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 393.53  E-value: 1.10e-136
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918   5 IDLPAPSNISSWWNFGSLLGLCLIIQILTGLFLAMHYTSDTSTAFSSVAHICRDVNYGWLIRYMHANGASMFFICLFLHV 84
Cdd:MTH00033   16 IDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHI 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918  85 GRGIYYGSYNMIETWNMGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRF 164
Cdd:MTH00033   96 GRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRF 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918 165 FAFHFILPFIIAALVFVHLLFLHETGSNNPTGLNSDTDKIPFHPYYTVKDFLGALILLMVFMILAL--FFPDVLGDPDNF 242
Cdd:MTH00033  176 FSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIepRIETLLQDPENF 255

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918 243 TPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALMPMLHTSKQRALTFRPITQTMYWVLVADLFTLT 322
Cdd:MTH00033  256 IQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILT 335

                         330       340
                  ....*....|....*....|....
gi 1384218918 323 WIGGQPV-EYPFIIIGQVASVAYF 345
Cdd:MTH00033  336 WIGSAPAgADPYVLIGRIATIFYF 359
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
2-345 2.28e-128

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 372.59  E-value: 2.28e-128
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918   2 HSFIDLPAPSNISSWWNFGSLLGLCLIIQILTGLFLAMHYTSDTSTAFSSVAHICRDVNYGWLIRYMHANGASMFFICLF 81
Cdd:COG1290    25 REHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVY 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918  82 LHVGRGIYYGSY------NmietWNMGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFS 155
Cdd:COG1290   105 LHMFRGFFYGAYkkprelN----WIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEF 180

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918 156 VDKATLTRFFAFH-FILPFIIAALVFVHLLFLHETGSNNPTG----LNSDTDKIPFHPYYTVKDFLGALILLMVFMILAL 230
Cdd:COG1290   181 PGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAF 260

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918 231 FFPDvlGDPDNFTPANPLNTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALILSILILALMPMLHTSKQRALTFRPITQ 308
Cdd:COG1290   261 FFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRT 338

                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 1384218918 309 TMYWVLVADLFTLTWIGGQPVEYpfIIIGQVASVAYF 345
Cdd:COG1290   339 ALGVAFIVFFIVLTILGANPPIA--TLLGSINTVTYF 373
CYTB MTH00086
cytochrome b; Provisional
 5-345 5.06e-123

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 357.71  E-value: 5.06e-123
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918   5 IDLPAPSNISSWWNFGSLLGLCLIIQILTGLFLAMHYTSDTSTAFSSVAHICRDVNYGWLIRYMHANGASMFFICLFLHV 84
Cdd:MTH00086    8 VTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHI 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918  85 GRGIYYGSYNMIETWNMGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRF 164
Cdd:MTH00086   88 FKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFF 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918 165 FAFHFILPFIIAALVFVHLLFLHETGSNNPTGLNSDTDKIPFHPYYTVKDFLGaLILLMVFMILALFFPDVLGDPDNFTP 244
Cdd:MTH00086  168 FVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYN-IIFWLVFIIFSLFYPFNLGDPEMFIE 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918 245 ANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALMPMLHTSKQralTFRPITQTMYWVLVADLFTLTWI 324
Cdd:MTH00086  247 ADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNYTS---CLNKLNKFLVFSFIVVNVILSWL 323

                         330       340
                  ....*....|....*....|.
gi 1384218918 325 GGQPVEYPFIIIGQVASVAYF 345
Cdd:MTH00086  324 GQCLVEYPFLFLSQIFSFIYF 344
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-192 4.22e-95

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 281.18  E-value: 4.22e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918   1 NHSFIDLPAPSNISSWWNFGSLLGLCLIIQILTGLFLAMHYTSDTSTAFSSVAHICRDVNYGWLIRYMHANGASMFFICL 80
Cdd:cd00284     7 NNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLML 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918  81 FLHVGRGIYYGSYN--MIETWNMGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDK 158
Cdd:cd00284    87 YLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDN 166

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1384218918 159 ATLTRFFAFHFILPFIIAALVFVHLLFLHETGSN 192
Cdd:cd00284   167 ATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00046
cytochrome b; Validated
 5-342 8.23e-91

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 275.71  E-value: 8.23e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918   5 IDLPAPSNISSWWNFGSLLGLCLIIQILTGLFLAMHYTSDTSTAFSSVAHICRDVNYGWLIRYMHANGASMFFICLFLHV 84
Cdd:MTH00046   10 IDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHM 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918  85 GRGIYYGSYNMIETWNMGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRF 164
Cdd:MTH00046   90 GRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRV 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918 165 FAFHFILPFIIAALVFVHLLFLHETGSNNPTGL-NSDTDKIPFHPYYTVKDFLGALILLMVFMILALFFPDVLGDPDNFT 243
Cdd:MTH00046  170 FSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSsNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYL 249

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918 244 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILIlalmpMLHTSKQRALTFRPITQTMYWVLVADLFTLTW 323
Cdd:MTH00046  250 EADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLVLVLSFLFF-----LWVPTFNGSSVYSVWRQVNFWLIVSLFFSLSY 324

                         330
                  ....*....|....*....
gi 1384218918 324 IGGQPVEYPFIIIGQVASV 342
Cdd:MTH00046  325 LGGCHPEYPYLLISQLFSV 343
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
4-190 3.20e-88

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 263.09  E-value: 3.20e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918   4 FIDLPAPSNISSWWNFGSLLGLCLIIQILTGLFLAMHYTSDTSTAFSSVAHICRDVNYGWLIRYMHANGASMFFICLFLH 83
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918  84 VGRGIYYG--SYNMIETWNMGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATL 161
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1384218918 162 TRFFAFHFILPFIIAALVFVHLLFLHETG 190
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 193-340 2.87e-52

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 169.75  E-value: 2.87e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918 193 NPTGLNSDTDKIPFHPYYTVKDFLGALILLMVFMILALFFPDVLGDPDNFTPANPLNTPPHIKPEWYFLFAYAILRSIPN 272
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1384218918 273 KLGGVLALILSILILALMPMLHTSKQRAlTFRPITQTMYWVLVADLFTLTWIGGQPVEYPFIIIGQVA 340
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
74-239 1.68e-47

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 158.17  E-value: 1.68e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918  74 SMFFICLFLHVGRGIYYGSYNMIE--TWNMGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIW 151
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918 152 GGFSVDKATLTRFFAFHF-ILPFIIAALVFVHLLFLHETGSNNPTGLNSDTDKIPFHPYYTVKDFLGALILLMVFMILAL 230
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 1384218918 231 FFPDVLGDP 239
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 19-194 7.20e-42

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 145.24  E-value: 7.20e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918  19 FGSLLGLCLIIQILTGLFLAMHYTSDTSTAFSSVAHICRDVNYGWLIRYMHANGASMFFICLFLHVGRGIYYGSYNMIE- 97
Cdd:PRK03735   44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918  98 -TWNMGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFH-FILPFII 175
Cdd:PRK03735  124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                         170
                  ....*....|....*....
gi 1384218918 176 AALVFVHLLFLHETGSNNP 194
Cdd:PRK03735  204 AVLMLAHFLMIRKQGISGP 222
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
244-344 2.68e-39

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 134.53  E-value: 2.68e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918 244 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALMPMLHTSKQRALTFRPITQTMYWVLVADLFTLTW 323
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 1384218918 324 IGGQPVEYPFIIIGQVASVAY 344
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
petB CHL00070
cytochrome b6
 10-194 7.42e-35

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 126.76  E-value: 7.42e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918  10 PSNISSWWNFGSLLGLCLIIQILTGLFLAMHYTSDTSTAFSSVAHICRDVNYGWLIRYMHANGASMFFICLFLHVGRGIY 89
Cdd:CHL00070   27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918  90 YGSYNMIE--TWNMGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAF 167
Cdd:CHL00070  107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                         170       180
                  ....*....|....*....|....*...
gi 1384218918 168 H-FILPFIIAALVFVHLLFLHETGSNNP 194
Cdd:CHL00070  187 HtFVLPLLTAVFMLMHFLMIRKQGISGP 214
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 228-325 3.83e-09

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 55.18  E-value: 3.83e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918 228 LALFFPDVLGDPdnftpANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALMPMLHTSKQRALTF-RPI 306
Cdd:COG5679    55 LAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENVNKFQNPFrRPV 129

                          90
                  ....*....|....*....
gi 1384218918 307 TQTMYwvLVADLFTLtWIG 325
Cdd:COG5679   130 ATAVF--LFGTLVTL-WLG 145
petD CHL00058
cytochrome b6/f complex subunit IV
 228-277 7.38e-08

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 51.16  E-value: 7.38e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1384218918 228 LALFFPDVLGDPdnftpANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGV 277
Cdd:CHL00058   54 LAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGV 98
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 228-325 1.11e-07

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 50.95  E-value: 1.11e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384218918 228 LALFFPDVLGDPdnftpANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALMPMLHTSKQRALTF-RPI 306
Cdd:TIGR01156  54 LAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFrRPV 128

                          90
                  ....*....|....*....
gi 1384218918 307 TQTMYwvLVADLFTLtWIG 325
Cdd:TIGR01156 129 ATTVF--LFGTVVAL-WLG 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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