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Conserved domains on  [gi|1391839919|gb|AWM96674|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Poicephalus gulielmi gulielmi]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 3.79e-147

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 418.84  E-value: 3.79e-147
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919   1 MSPLAKLVTATSLLLGTTVTITSNHWAMAWAGLEINTLAIIPLISKSHHPRAIEATTKYFLVQAAASALVLFSSMTNAWA 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919  81 TGQWDITQLTHPPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPTTILLLTSHSLNPTLLTTMSTM 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919 161 SIGLGGWMGLNQTQTRKIMASSSISHLGWMTTVIIYNPKLTLLAFYIYTLMTASIFLTMNTVKTLKLTTLMTSWTKTPML 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919 241 TTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIISMLSLLGLFFYLRLAYCSTITLPPNPSAKMKQWSTKTP 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 1391839919 321 TNPLIPTLTSLSTSLLPLSPMILTIT 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 3.79e-147

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 418.84  E-value: 3.79e-147
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919   1 MSPLAKLVTATSLLLGTTVTITSNHWAMAWAGLEINTLAIIPLISKSHHPRAIEATTKYFLVQAAASALVLFSSMTNAWA 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919  81 TGQWDITQLTHPPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPTTILLLTSHSLNPTLLTTMSTM 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919 161 SIGLGGWMGLNQTQTRKIMASSSISHLGWMTTVIIYNPKLTLLAFYIYTLMTASIFLTMNTVKTLKLTTLMTSWTKTPML 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919 241 TTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIISMLSLLGLFFYLRLAYCSTITLPPNPSAKMKQWSTKTP 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 1391839919 321 TNPLIPTLTSLSTSLLPLSPMILTIT 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-298 1.63e-20

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 92.10  E-value: 1.63e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919  14 LLGTTVTITSNHWAMAWAGLEINTLAIIPLIS-KSHHPRAIEATTKYFLVQAAASALVLF-SSMTNAwATGQWDITQL-- 89
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIaa 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919  90 ------THPP----SCLLLTTAIAIKLGLTPFHFWFPEVLQGSslttalllstlmklpPTTI------------------ 141
Cdd:COG1007   191 alaaggANSPllllGLVLVLAGLAFKLSAVPFHMWTPDVYEGA---------------PTPVtaflatapkiaafaallr 255

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919 142 -LLLTSHSLNP---TLLTTMSTMSIGLGGWMGLNQTQTRKIMASSSISHLGWMTTVIIYNPKLTL--LAFY--IYTLMTA 213
Cdd:COG1007   256 lLVEAFPGLAAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYllAYLFMNL 335

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919 214 SIFLTMNTV-KTLKLTTLMTSW----TKTPMLTTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIISMLSLL 288
Cdd:COG1007   336 GAFAVILLLsRKGGEAEEIEDLaglaRRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVI 415

                         330
                  ....*....|
gi 1391839919 289 GLFFYLRLAY 298
Cdd:COG1007   416 SAYYYLRVVK 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 2.79e-19

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 86.60  E-value: 2.79e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919  23 SNHWAMAWAGLEINTLAIIPLI-SKSHHPRAIEATTKYFLVQAAASALVLFSSMTNAWATGQWDITQLTHPPSC------ 95
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGglnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919  96 -----LLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLM-KLPPTTILLLTS--HSLNPT---LLTTMSTMSIGL 164
Cdd:pfam00361  81 llllfLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLvKAGGYGLIRRSLlyLPSSPFiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919 165 GGWMGLNQTQTRKIMASSSISHLGWMT----TVIIYNPKLTLLAFYIYTLMTASIFL-----TMNTVKTLKLTTLMTSWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLialgAGTIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1391839919 236 KTPMLTTTLMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-297 6.68e-19

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 87.31  E-value: 6.68e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919  14 LLGTTVTITSNHWAMAWAGLEINTLAIIPLIS-KSHHPRAIEATTKYFLVQAAASALVLFSSMTNAWATGQWDITQLTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919  93 PSC------------LLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPTTILL-------LTSHSLNPTL 153
Cdd:TIGR01770 192 LSNgmlnisllllgiVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrlflyilFGFSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919 154 LTTMSTMSIGLGGWMGLNQTQTRKIMASSSISHLGWMTTVIIYNPKLTLLA--FY--IYTLMTASIFLTM------NTVK 223
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYifIYALMSLGAFGVLsllrsyKDEW 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1391839919 224 TLKLTTLMTSWTKTPMLTTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIISMLSLLGLFFYLRLA 297
Cdd:TIGR01770 352 IEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 3.79e-147

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 418.84  E-value: 3.79e-147
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919   1 MSPLAKLVTATSLLLGTTVTITSNHWAMAWAGLEINTLAIIPLISKSHHPRAIEATTKYFLVQAAASALVLFSSMTNAWA 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919  81 TGQWDITQLTHPPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPTTILLLTSHSLNPTLLTTMSTM 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919 161 SIGLGGWMGLNQTQTRKIMASSSISHLGWMTTVIIYNPKLTLLAFYIYTLMTASIFLTMNTVKTLKLTTLMTSWTKTPML 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919 241 TTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIISMLSLLGLFFYLRLAYCSTITLPPNPSAKMKQWSTKTP 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 1391839919 321 TNPLIPTLTSLSTSLLPLSPMILTIT 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-325 5.77e-121

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 352.30  E-value: 5.77e-121
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919   1 MSPLAKLVTATSLLLGTTVTITSNHWAMAWAGLEINTLAIIPLISKSHHPRAIEATTKYFLVQAAASALVLFSSMTNAWA 80
Cdd:MTH00070    1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919  81 TGQWDITQLTHPPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPTTILLLTSHSLNPTLLTTMSTM 160
Cdd:MTH00070   81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919 161 SIGLGGWMGLNQTQTRKIMASSSISHLGWMTTVIIYNPKLTLLAFYIYTLMTASIFLTMNTVKTLKLTTLMTSWTKTPML 240
Cdd:MTH00070  161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919 241 TTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIISMLSLLGLFFYLRLAYCSTITLPPNPSAKMKQWSTKTP 320
Cdd:MTH00070  241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320


                  ....*
gi 1391839919 321 TNPLI 325
Cdd:MTH00070  321 TNNLL 325
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-324 9.66e-120

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 349.10  E-value: 9.66e-120
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919   1 MSPLAKLVTATSLLLGTTVTITSNHWAMAWAGLEINTLAIIPLISKSHHPRAIEATTKYFLVQAAASALVLFSSMTNAWA 80
Cdd:MTH00135    1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919  81 TGQWDITQLTHPPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPTtILLLTSHSLNPTLLTTMSTM 160
Cdd:MTH00135   81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPF-ALILQIAPTNPTLLITLGLT 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919 161 SIGLGGWMGLNQTQTRKIMASSSISHLGWMTTVIIYNPKLTLLAFYIYTLMTASIFLTMNTVKTLKLTTLMTSWTKTPML 240
Cdd:MTH00135  160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919 241 TTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIISMLSLLGLFFYLRLAYCSTITLPPNPSAKMKQWSTKTP 320
Cdd:MTH00135  240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319


                  ....
gi 1391839919 321 TNPL 324
Cdd:MTH00135  320 QLTL 323
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-325 2.43e-105

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 312.55  E-value: 2.43e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919   1 MSPLAKLVTATSLLLGTTVTITSNHWAMAWAGLEINTLAIIPLISKSHHPRAIEATTKYFLVQAAASALVLFSSMTNAWA 80
Cdd:MTH00105    1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919  81 TGQWDITQLTHPPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPTTILLLTSHSLNPTLLTTMSTM 160
Cdd:MTH00105   81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919 161 SIGLGGWMGLNQTQTRKIMASSSISHLGWMTTVIIYNPKLTLLAFYIYTLMTASIFLTMNTVKTLKLTTLMTSWTKTPML 240
Cdd:MTH00105  161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919 241 TTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIISMLSLLGLFFYLRLAYCSTITL-PPNPSAKMKQWSTKT 319
Cdd:MTH00105  241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMfPSTNNMKMKWQFENT 320


                  ....*.
gi 1391839919 320 PTNPLI 325
Cdd:MTH00105  321 KPMTLL 326
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-346 6.81e-90

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 273.00  E-value: 6.81e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919   1 MSPLAKLVTATSLLLGTTVTITSNHWAMAWAGLEINTLAIIPLISKSHHPRAIEATTKYFLVQAAASALVLFSSMTNAWA 80
Cdd:MTH00200    1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919  81 TGQWDITQLTHPPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPTTILLLTSHSLNPTLLTTMSTM 160
Cdd:MTH00200   81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919 161 SIGLGGWMGLNQTQTRKIMASSSISHLGWMTTVIIYNPKLTLLAFYIYTLMTASIFLTMNTVKTLKLTTLMTSWTKTPML 240
Cdd:MTH00200  161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919 241 TTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIISMLSLLGLFFYLRLAYCSTITLPPNPSAKMKQWSTKTP 320
Cdd:MTH00200  241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                         330       340
                  ....*....|....*....|....*.
gi 1391839919 321 TNPLIPTLTSLSTSLLPLSPMILTIT 346
Cdd:MTH00200  321 SNLLVGLLLLLSILGLPLTPQLLFLF 346
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 11-325 9.69e-82

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 252.16  E-value: 9.69e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919  11 TSLLLGTTVTITSNHWAMAWAGLEINTLAIIPLISKSHHPRAIEATTKYFLVQAAASALVLFSSMTNAWATGQWDITQLT 90
Cdd:MTH00041   11 TSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPL 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919  91 HPPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPTTILLLTSHSLNPTLLTTMSTMSIGLGGWMGL 170
Cdd:MTH00041   91 NTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGL 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919 171 NQTQTRKIMASSSISHLGWMTTVIIYNPKLTLLAFYIYTLMTASIFLTMNTVKTLKLTTLMTSWTKTPMLTTTLMLTLLS 250
Cdd:MTH00041  171 NQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILS 250

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1391839919 251 LAGLPPLTGFLPKWLIIQELTKQEMTTTATIISMLSLLGLFFYLRLAYCSTITLPPNPSAKMKQWSTKTPTNPLI 325
Cdd:MTH00041  251 LGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGNITVYG 325
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-313 3.95e-55

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 183.10  E-value: 3.95e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919   1 MSPLAKLVTATSLLLGTTVTITSNHWAMAWAGLEINTLAIIPLISKSHHPRAIEATTKYFLVQAAASALVLFSSMTNAWa 80
Cdd:MTH00160    2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919  81 tgqwdITQLTHPPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPttiLLLTSHSLNPTLLTTMSTM 160
Cdd:MTH00160   81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAP---LILLSYLINNNFIIIIIIL 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919 161 SIGLGGWMGLNQTQTRKIMASSSISHLGWMTTVIIYNPKLTLLAFYIYTLMTASIFLTMNTVKTLKLTTLMTSWTKTPML 240
Cdd:MTH00160  153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1391839919 241 TTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIISMLSLLGLFFYLRLAYCSTITLPPNPSAKMK 313
Cdd:MTH00160  233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLK 305
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 1-302 6.14e-46

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 159.28  E-value: 6.14e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919   1 MSPLAKLVTATSLLLGTTVTITSNHWAMAWAGLEINTLAIIPLISKSHHPRAIEATTKYFLVQAAASALVLFSSMTNAWA 80
Cdd:MTH00144    1 MSSPSNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919  81 TGQWDITqlthppscLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPttILLLTSHSLNPTLLTT---M 157
Cdd:MTH00144   81 SFSWFSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAP--LFLLSNFLDLYWLAYLlcvI 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919 158 STMSIGLGGWMGLNQTQTRKIMASSSISHLGWMTTVIIYNPKLTLLAFYIYTLMTASIFLTMNTvKTLKLTTLMTSWTKT 237
Cdd:MTH00144  151 SVLSALVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWS-GDSGSMKDLGSLKPS 229

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1391839919 238 PMLTTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIISMLSLLGLFFYLRLAYCSTI 302
Cdd:MTH00144  230 YKTGLSIISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL 294
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 11-319 9.85e-43

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 150.70  E-value: 9.85e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919  11 TSLLLGTTVTITSNHWAMAWAGLEINTLAIIPLISKSHHPRAIEATTKYFLVQAAASALVLFSSmtnawaTGQWDITQLT 90
Cdd:MTH00011   13 STMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSFPSLL 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919  91 HPPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPTTILLLTSHSLNPTLLTTMSTMSIGLGGWMGL 170
Cdd:MTH00011   87 KNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGM 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919 171 NQTQTRKIMASSSISHLGWMTTVIIYNPKLTLLAFYIYTLMTASIFLTMNTVKTLKLTTLMTSWTKTPMLTTTLMLTLLS 250
Cdd:MTH00011  167 NQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLS 246

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1391839919 251 LAGLPPLTGFLPKWLIIQELTKQEMTTTATIISMLSLLGLFFYLRLAYCSTITLPPNPSAKMKQWSTKT 319
Cdd:MTH00011  247 LGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFMYLSPTFSSLKSAPYEPKT 315
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 12-313 3.50e-40

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 144.04  E-value: 3.50e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919  12 SLLLGTTVTITSNHWAMAWAGLEINTLAIIPLISKSHHPRAIEATTKYFLVQAAASALVLFSSMTNAWATgqwditqLTH 91
Cdd:MTH00197    6 IIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL-------YLS 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919  92 PPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPttILLLTSHSLNPTLLTTMSTMSIGLGGWMGLN 171
Cdd:MTH00197   79 LLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAP--LLILAFNSSSFMGLLICSVLSSLIGGIGGMN 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919 172 QTQTRKIMASSSISHLGWMTTVIIYNPKLTLLAFYIYTLMTASIFLTMNTVKTLKLTTLMTSWTKTPMLTTTLMLTLLSL 251
Cdd:MTH00197  157 QSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSL 236

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1391839919 252 AGLPPLTGFLPKWLIIQELTKQEMTTTATIISMLSLLGLFFYLRLAYCSTITLPPNPSAKMK 313
Cdd:MTH00197  237 GGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMK 298
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-296 8.77e-21

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 92.02  E-value: 8.77e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919  13 LLLGTTVTITSNHWAMAWAGLEINTLAIIPLI-SKSHHPRAIEATTKYFLVQAAASALVLFS-------------SMTNA 78
Cdd:MTH00196    2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919  79 WATGQWDITQLTHPPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPTTILLLTSHSLNPTLLTTMS 158
Cdd:MTH00196   82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVNILLIGGLF 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919 159 TMSIGLGGwmGLNQTQTRKIMASSSISHLGWMTTVI----IYNPKLTLLAFYIYTLMTASIF---LTMNTVKTLkLTTLM 231
Cdd:MTH00196  162 SLFVGAIG--ALNQTKIKRLLAYSGIGHMGFVLWGIeigsFESIQASLVYLFIYIIMSICVFsiiLALNVYKNL-IIEFS 238

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1391839919 232 TSWTKTPMLTTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIISMLSLLGLFFYLRL 296
Cdd:MTH00196  239 GLSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-298 1.63e-20

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 92.10  E-value: 1.63e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919  14 LLGTTVTITSNHWAMAWAGLEINTLAIIPLIS-KSHHPRAIEATTKYFLVQAAASALVLF-SSMTNAwATGQWDITQL-- 89
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIaa 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919  90 ------THPP----SCLLLTTAIAIKLGLTPFHFWFPEVLQGSslttalllstlmklpPTTI------------------ 141
Cdd:COG1007   191 alaaggANSPllllGLVLVLAGLAFKLSAVPFHMWTPDVYEGA---------------PTPVtaflatapkiaafaallr 255

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919 142 -LLLTSHSLNP---TLLTTMSTMSIGLGGWMGLNQTQTRKIMASSSISHLGWMTTVIIYNPKLTL--LAFY--IYTLMTA 213
Cdd:COG1007   256 lLVEAFPGLAAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYllAYLFMNL 335

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919 214 SIFLTMNTV-KTLKLTTLMTSW----TKTPMLTTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIISMLSLL 288
Cdd:COG1007   336 GAFAVILLLsRKGGEAEEIEDLaglaRRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVI 415

                         330
                  ....*....|
gi 1391839919 289 GLFFYLRLAY 298
Cdd:COG1007   416 SAYYYLRVVK 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 2.79e-19

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 86.60  E-value: 2.79e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919  23 SNHWAMAWAGLEINTLAIIPLI-SKSHHPRAIEATTKYFLVQAAASALVLFSSMTNAWATGQWDITQLTHPPSC------ 95
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGglnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919  96 -----LLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLM-KLPPTTILLLTS--HSLNPT---LLTTMSTMSIGL 164
Cdd:pfam00361  81 llllfLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLvKAGGYGLIRRSLlyLPSSPFiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919 165 GGWMGLNQTQTRKIMASSSISHLGWMT----TVIIYNPKLTLLAFYIYTLMTASIFL-----TMNTVKTLKLTTLMTSWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLialgAGTIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1391839919 236 KTPMLTTTLMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-296 5.73e-19

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 87.57  E-value: 5.73e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919  14 LLGTTVTITSNHWAMAWAGLEINTLAIIPLIS-KSHHPRAIEATTKYFLVQAAASALVLFSSMTNAWATGQWDITQL--- 89
Cdd:PRK05777  113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIaka 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919  90 -----THPP----SCLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKL----PPTTILLLTSHSLNPT---L 153
Cdd:PRK05777  193 ladgsGNSLlllfGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaVLLRLLVVAFGGLSEDwqqV 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919 154 LTTMSTMSIGLGGWMGLNQTQTRKIMASSSISHLGWMTTVIIYNPKLTL--LAFY--IYTLMTASIF--LTMNTVKTLKL 227
Cdd:PRK05777  273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYllAYLFMTLGAFgvISLLRRKGGEA 352

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1391839919 228 TTLmTSWT----KTPMLTTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIISMLSLLGLFFYLRL 296
Cdd:PRK05777  353 ESI-SDFAglskRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-297 6.68e-19

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 87.31  E-value: 6.68e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919  14 LLGTTVTITSNHWAMAWAGLEINTLAIIPLIS-KSHHPRAIEATTKYFLVQAAASALVLFSSMTNAWATGQWDITQLTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919  93 PSC------------LLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPTTILL-------LTSHSLNPTL 153
Cdd:TIGR01770 192 LSNgmlnisllllgiVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrlflyilFGFSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919 154 LTTMSTMSIGLGGWMGLNQTQTRKIMASSSISHLGWMTTVIIYNPKLTLLA--FY--IYTLMTASIFLTM------NTVK 223
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYifIYALMSLGAFGVLsllrsyKDEW 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1391839919 224 TLKLTTLMTSWTKTPMLTTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIISMLSLLGLFFYLRLA 297
Cdd:TIGR01770 352 IEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 13-296 2.75e-14

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 73.51  E-value: 2.75e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919  13 LLLGTTVTITSNHWAMAWAGLEINTLAIIPLIS-KSHHPRAIEATTKYFLVQAAASALVLFSSMTNAWATGQWDI----T 87
Cdd:MTH00199  106 VALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqginS 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919  88 QLTHPPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPTTILLLTSHSLNPTLLTtmSTMSIGLGGW 167
Cdd:MTH00199  186 ILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSIIYGAI 263

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919 168 MGLNQTQTRKIMASSSISHLGWMTTVIIYNP----KLTLLAFYIYTLMTA---SIFLTMNTVKTLkLTTLMTSWTKTPML 240
Cdd:MTH00199  264 GALNQTKIKRLLAYSGIGHMGFILFGVAIGSfesiQASLIYMIIYVIMSIcsfSIILSLKLTKGL-IVEVSGLSRKNPVI 342

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1391839919 241 TTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIISMLSLLGLFFYLRL 296
Cdd:MTH00199  343 ALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 13-296 1.39e-13

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 71.33  E-value: 1.39e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919  13 LLLGTTVTITSNHWAMAWAGLEINTLAIIPLISKSHHPRAIEATTKYFLVQAAASALVLFSSMTNAWATGQWDITQLTH- 91
Cdd:COG0651   116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAr 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919  92 ----PPS-----CLLLTTAIAIKLGLTPFHFWFPEVlqgsslttalllstlMKLPPT--------------------TIL 142
Cdd:COG0651   196 laelDPGlllaaFALLLVGFGIKAALFPLHFWLPDA---------------YPAAPSpvsallsglltkvgvyailrVLT 260

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919 143 LLTSHSLNP---TLLTTMSTMSIGLGGWMGLNQTQTRKIMASSSISHLGWMTTVI-IYNPKLTLLAFYIY---TLMTASI 215
Cdd:COG0651   261 LLFGADPALflgTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLgLGTPLGLAGALFHLlnhALAKALL 340

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919 216 FLT----MNTVKTLKLTTLMTSWTKTPMLTTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIISMLSLLGLF 291
Cdd:COG0651   341 FLAagaiERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLA 420


                  ....*
gi 1391839919 292 FYLRL 296
Cdd:COG0651   421 YFVRI 425
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 15-296 1.36e-11

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 65.65  E-value: 1.36e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919  15 LGTTVTITSNHWAMAWAGLEINTLAIIPLISKSHHPRAI---------EATTKYFLVQAAASALVLFSSMTNAWATGQ-- 83
Cdd:MTH00198  199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNeg 278

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919  84 ------------WDITQLTHPPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLppTTILLLTSHSLNP 151
Cdd:MTH00198  279 mlgtilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSLVITS 356

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919 152 TLLTTMSTMSIGLGGWMGLNQTQTRKIMASSSISHLGWM-------TTVIIYNPKLTLLAFYIYTLMTASIFLTMNTVKT 224
Cdd:MTH00198  357 KLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFIligvsagTYESLQASWTYAVTYLVSALASFTVICTLEEFGT 436

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919 225 L------------------KLTTLMTSWTKTPMLTTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIISMLS 286
Cdd:MTH00198  437 RtptsrqrdgsfgnynlvrRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIAFSSSLSIYYLVA 516

                         330
                  ....*....|....*..
gi 1391839919 287 LLGL-------FFYLRL 296
Cdd:MTH00198  517 LFAIictcisaFYYIRI 533
ndhB CHL00049
NADH dehydrogenase subunit 2
 51-263 2.22e-07

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 52.31  E-value: 2.22e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919  51 RAIEATTKYFLVQAAASALVLFS-SMTNAWATGQWDI---------TQLTHPPSCLL----LTTAIAIKLGLTPFHFWFP 116
Cdd:CHL00049  159 RSNEATMKYLLMGGASSSILVYGfSWLYGLSGGEIELqeivnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTP 238

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919 117 EVLQGSSLTTALLLSTLMKLP----PTTILLLTSHSLNP---TLLTTMSTMSIGLGGWMGLNQTQTRKIMASSSISHLGW 189
Cdd:CHL00049  239 DVYEGSPTPVVAFLSVTSKVAasalATRIFDIPFYFSSNewhLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGY 318

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919 190 MTTVII-------YNPKLTLLAFYIytlmtasiFLTMNTVKTLKLTTLMT----------SWTKTPMLTTTLMLTLLSLA 252
Cdd:CHL00049  319 VIIGIIvgdsndgYASMITYMLFYI--------FMNLGTFACIVLFGLRTgtdnirdyagLYTKDPFLALSLALCLLSLG 390

                         250
                  ....*....|.
gi 1391839919 253 GLPPLTGFLPK 263
Cdd:CHL00049  391 GIPPLAGFFGK 401
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-266 3.04e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 48.94  E-value: 3.04e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919  33 LEINTLAIIPLIS-KSHHPRAIEATTKYFLVQAAASALVLFSSmtnAWATGQWDI-------TQLTHPPSCL------LL 98
Cdd:PRK08376  150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTlnmaylaVKMSENPTVVakialaLF 226

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919  99 TTAIAIKLGLTPFHFW----FPEVLQGSSLTTALLLSTLMKLPPTTILLLTSHSLNPT----LLTTMSTMSIGLGGWMGL 170
Cdd:PRK08376  227 IAGLAMKSGAVPVHMWlpdaYPAAPSSISAMLLVIKQAGLYALARVLFSIYGPAINLAtvgwVIIILGCLTMFVGVAMAV 306

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919 171 NQTQTRKIMASSSISHLGWM------TTVIIYNPKL-----TLLAFYIY-----TLMTASIFLT----MNTVKTLKLTTL 230
Cdd:PRK08376  307 VQKDVKRLLAYHSVSQIGYMllglgvGLAALGDPAMasygeIALAGGIYhivnhALYKALLFLTagavIYETGTRNLNEL 386

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 1391839919 231 MTSWTKTPMLTTTLMLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK08376  387 GGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 34-298 7.91e-06

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 47.68  E-value: 7.91e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919  34 EINTLA---IIPLISKshhpRAIEATTKYFLVQAAASALVLFSSMTNAWATGQWDIT-------QLTHPPSCLLLTTAIA 103
Cdd:PRK08668  128 EIMTFSsfmMVPMGKK----ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFAdisqgliNDTSTGFALIVFLFLL 203

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919 104 I----KLGLTPFHFWFPE-----------VLQGSSLTT-ALLLSTLMKLPPTTILLLT-----SHSLNPTLLTTMSTMSI 162
Cdd:PRK08668  204 AfgvaKAGIFPLHVWAPDayseapqsfsaVLSGQLSKLgAYGFLLVLYVLPGTKLFSEfgtyrGVPLFNYILAWLGNISI 283

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919 163 GLGGWMGLNQTQTRKIMASSSISHLGWmttVIIYNPKLTLLAF-------YIYTLMTASIFLTMNTV----KTLKLTTLM 231
Cdd:PRK08668  284 IVGTLMAILQEDIKKLIAYSSVANGGY---ILVGLGLGTSLGFagglfhvFNHALFKGLFFLIFAAViyrtGTTKISEMG 360

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1391839919 232 TSWTKTPMLTTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIISMLSLLGLFFYLRLAY 298
Cdd:PRK08668  361 GLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFFGSIGSFLYVFRPLA 427
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-298 9.46e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 47.18  E-value: 9.46e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919  33 LEINTLAIIPLISKSHHPRAIEATTKYFLVQAAASALVLFS-SMTNAwATGQWDITQLTH--PPSCLLLT------TAIA 103
Cdd:PRK08375  135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvGLLYG-VTGTLNMADLAGalAENPTVVTafgfvlLALA 213

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919 104 IKLGLTPFHFWFPE-----------VLQGSSLTTALLLSTLMKLPPTTILLLTSHSLNPTLLTTMStMSIGLGGWMGLNQ 172
Cdd:PRK08375  214 LKAAVFPLHTWLPRaypaappvvtaLLSGLVTKVAVYALIRIYFTVFGGDFRFALGLGWLLAVLAL-LSMLVGSLAALGQ 292

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919 173 TQTRKIMASSSISHLGWMTTVIIYNPKLTLLA--FYI--YTLMTASIFL-------TMNTVKTLKLTTLMTS--WTktpm 239
Cdd:PRK08375  293 DDVKRVLAYSTVSQMGYILLGLALLTPLALAAglLHLlhHALMKGALFLaagaievTYGTRRLSELSGLGRRmpLT---- 368

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1391839919 240 lTTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIISMLSLLGLFFYLRLAY 298
Cdd:PRK08375  369 -AAAFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
PRK12650 PRK12650
DUF4040 family protein;
29-263 2.74e-05

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 46.19  E-value: 2.74e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919  29 AWaglEINTLAIIPLISKSHhPRAIEATTKYFLVQAAASALVLFSSMTNAWATGQWDITQLTHPPSCL---LLTTAIAIK 105
Cdd:PRK12650  138 AW---ELVSLASFFLIARSG-SGGEAGSIRTLILTFFGGLTLLAAVAIAATQTGTTSLSGILHSDVWAekpGLTTVVAVL 213

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919 106 LGLT--------PFHFWFPEVLQGSSLTTALLLSTLMKLPPTTILLLTSHSL--NPT---LLTTMSTMSIGLGGWMGLNQ 172
Cdd:PRK12650  214 IAVAaftksaqfPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFhdVAVwnwLLIIVGMITALMGAVFAVQK 293

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919 173 TQTRKIMASSSISHLGWMTTVIIYNPKLTLLAFYIYT----LMTASIFLTMNTVK----TLKLTTLMTSWTKTPMLTTTL 244
Cdd:PRK12650  294 TDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTlahaLFKSSLFMLIGVVDhqagTRDIRRLGSLWRRMPFTFVSV 373

                         250
                  ....*....|....*....
gi 1391839919 245 MLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12650  374 TIAALSMAAVPPLFGFVSK 392
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 38-191 4.46e-05

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 45.07  E-value: 4.46e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919  38 LAIIP---LISKSHHPRAIEATTKYFLVQAAASALVLFSSMTNAWATGQW--DITQLTH---PPS-----CLLLTTAIAI 104
Cdd:COG1008   142 LMLIPmyfLIGIWGGERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAaplPLTaqlllFLAFFIAFAV 221

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919 105 KLGLTPFHFWFPEVLQGSSlttalllstlmklPPTTILL---------------------LTSHSLNPTLLTtMSTMSIG 163
Cdd:COG1008   222 KVPMFPFHTWLPDAHVEAP-------------TAGSVLLagvllkmggygllrfalplfpEASAYFAPLLAA-LGVIGII 287

                         170       180
                  ....*....|....*....|....*...
gi 1391839919 164 LGGWMGLNQTQTRKIMASSSISHLGWMT 191
Cdd:COG1008   288 YGALVALAQTDLKRLIAYSSVSHMGFVL 315
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-263 7.76e-04

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 41.19  E-value: 7.76e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919  50 PRAIEATTKYFLVQAAASALVLF-SSMTNAWATGQWDIT----QLTHPPSCLLLTT------AIAIKLGLTPFHFWFPEV 118
Cdd:PRK02504  157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGSTQLSaialALITSPSLGLALAlvfviaGIAFKISAVPFHQWTPDV 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919 119 LQGSSLTTALLLSTLMKLPPTTI---LLLTSHSLNPT----LLTTMSTMSIGLGGWMGLNQTQTRKIMASSSISHLGWMT 191
Cdd:PRK02504  237 YEGSPTPVVAFLSVGSKAAGFALairLLVTAFPSFDEqwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM 316

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919 192 TVIIYNPKLTLLAFYIYtlMTASIFLTMNTVKTLKLTTLMTS----------WTKTPMLTTTLMLTLLSLAGLPPLTGFL 261
Cdd:PRK02504  317 IGLVAGTEAGYASMVFY--LLAYLFMNLGAFACVILFSLRTGtdqisdyaglYQKDPLLTLGLSLCLLSLGGIPPLAGFF 394


                  ..
gi 1391839919 262 PK 263
Cdd:PRK02504  395 GK 396
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-210 9.38e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 40.89  E-value: 9.38e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919  13 LLLGTTVTITSNHWAMAWAGLEINTLAIIPLISKSHHPRAIEATTKYFLVQAAA------SALVLFSSMTNAWATGQWDI 86
Cdd:PRK08676  111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919  87 TQLTH-----PPSCLLLT-----TAIAIKLGLTPFHFWFPEV-LQGSSLTTALLLSTLMKLPPTTILLLTS-------HS 148
Cdd:PRK08676  191 TELAAhasllSPSVLGASflfifIGFLAKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILRLSAllrqsgaAE 270

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1391839919 149 LNPTLLTTMSTMSIGLGGWMGLNQTQTRKIMASSSISHLGWMTTVIIYNPKLTLLAFYIYTL 210
Cdd:PRK08676  271 QFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHML 332
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 20-211 1.80e-03

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 39.91  E-value: 1.80e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919  20 TITSNHWAMAWAGLEINTLAIIPLISKSHHPRAIEATTKYFLVQAAASALVLFSS----------MTNAWATGQWdiTQL 89
Cdd:PRK06458  124 ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTilvyanaatvMGDGEMAILW--TEL 201

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919  90 THPPSCL---LLTTAIAI-------KLGLTPFHFWFPE-----------VLQGSSLTTALLLSTLMKLppttILLLTSHS 148
Cdd:PRK06458  202 LKHASLLdptLMKLAFVFlligfgtKVGLFPMHAWLPDahseapspvsaLLSGVLLNVALYAVLRYYI----LIDAAIGS 277

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1391839919 149 LNP-TLLTTMSTMSIGLGGWMGLNQTQTRKIMASSSISHLGWMTTVIIYNPKLTLLAFYIYTLM 211
Cdd:PRK06458  278 DFPgRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLN 341
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 80-263 3.29e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 39.52  E-value: 3.29e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919  80 ATGQWDITQL-THPPSCLLLTTAIAI-------KLGLTPFHFWFPEVLQGSSLTTALLLSTLM---------KLPPTtil 142
Cdd:PRK12644  183 AAGTYRLSELlADPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGAMAAPTPVSAYLHAAAMvkagiylvaRLAPG--- 259

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919 143 LLTSHSLNPTLLTT-MSTMSigLGGWMGLNQTQTRKIMASSSISHLGWMTTVIIYNPKLTLLA----FYIYTLMTASIFL 217
Cdd:PRK12644  260 FADVPVWRPTVLVLgLATML--LGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRDAALAglamLLAHALFKAALFL 337

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1391839919 218 TMNTVK----TLKLTTLMTSWTKTPMLTTTLMLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12644  338 VVGIIDhstgTRDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAK 387
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-288 5.04e-03

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 38.77  E-value: 5.04e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919  50 PRAIEATTKYFLVQAAASALVLFSSMTNAWATGQ-WDITQLTHPPSCLLLTT--------AIAIKLGLTPFHFWFPEV-L 119
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGtFDLLELLNLPLPFGVQTwlflaffiAFAVKVPLFPLHTWLPDAhV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919 120 QGSSLTTALLLSTLMKLPPTTILLL-------TSHSLNPtLLTTMSTMSIGLGGWMGLNQTQTRKIMASSSISHLGWMTT 192
Cdd:TIGR01972 232 EAPTAGSVILAGVLLKMGTYGFLRFnlplfpdASLYFAP-VLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLL 310

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919 193 VIIYNPKLTLLAFYIYT----LMTASIFLTMNTV----KTLKLTTLMTSWTKTPMLTTTLMLTLLSLAGLPPLTGFLPKW 264
Cdd:TIGR01972 311 GIFSFNELGISGAVFQMishgLITAALFLLVGVLyeraHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEF 390

                         250       260
                  ....*....|....*....|....
gi 1391839919 265 LIIQELTKqeMTTTATIISMLSLL 288
Cdd:TIGR01972 391 LILLGSFK--VNPVVAFLAALGIV 412
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 152-296 6.96e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 38.18  E-value: 6.96e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919 152 TLLTTMSTMSIGLGGWMGLNQTQTRKIMASSSISHLGWMTTVIIYNPKLTLLAFYIY----TLMTASIFLTMNTVK---- 223
Cdd:PRK12662  280 NVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVSGSISyhfg 359

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1391839919 224 TLKLTTLMTSWTKTPMLTTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIISMLSLLGLFFYLRL 296
Cdd:PRK12662  360 TTKLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIKSNAWIGLVVLLVGSGLSVIYVWKI 432
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 164-289 9.89e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 37.98  E-value: 9.89e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391839919 164 LGGWMGLNQTQTRKIMASSSISHLGWMTTVIIYNPKLTLLAFYIY----TLMTASIFLTMNTVK----TLKLTTLMTSWT 235
Cdd:PRK12647  272 TGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAIKAAVLFlvahSLYKGALFMVAGIIDhetgTRDITKLGGLRR 351

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1391839919 236 KTPMLTTTLMLTLLSLAGLPPLTGFLPKWLIIQELTkqEMTTTATIISMLSLLG 289
Cdd:PRK12647  352 AMPITAAAALLAALSMAGLPPLFGFLAKELIYEALL--EAPLWSLILTVAAVLG 403
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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