NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1417861449|gb|AWY10574|]
View 

aldehyde dehydrogenase 18 family member A1, partial [Homo sapiens]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
P5CS super family cl31062
delta l-pyrroline-5-carboxylate synthetase; This protein contains a glutamate 5-kinase (ProB, ...
1-61 1.09e-31

delta l-pyrroline-5-carboxylate synthetase; This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region. [Amino acid biosynthesis, Glutamate family]


The actual alignment was detected with superfamily member TIGR01092:

Pssm-ID: 130164 [Multi-domain]  Cd Length: 715  Bit Score: 114.24  E-value: 1.09e-31
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1417861449   1 KIHAGPKFASYLTFSPSEVKSLQTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTED 61
Cdd:TIGR01092 567 TIHGGPRFAAYLTFNISETKSFRTEYSSLACTVEIVDDVYDAIDHIHKHGSAHTDCIVTED 627
 
Name Accession Description Interval E-value
P5CS TIGR01092
delta l-pyrroline-5-carboxylate synthetase; This protein contains a glutamate 5-kinase (ProB, ...
1-61 1.09e-31

delta l-pyrroline-5-carboxylate synthetase; This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region. [Amino acid biosynthesis, Glutamate family]


Pssm-ID: 130164 [Multi-domain]  Cd Length: 715  Bit Score: 114.24  E-value: 1.09e-31
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1417861449   1 KIHAGPKFASYLTFSPSEVKSLQTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTED 61
Cdd:TIGR01092 567 TIHGGPRFAAYLTFNISETKSFRTEYSSLACTVEIVDDVYDAIDHIHKHGSAHTDCIVTED 627
ALDH_F18-19_ProA-GPR cd07079
Gamma-glutamyl phosphate reductase (GPR), aldehyde dehydrogenase families 18 and 19; ...
1-61 7.31e-23

Gamma-glutamyl phosphate reductase (GPR), aldehyde dehydrogenase families 18 and 19; Gamma-glutamyl phosphate reductase (GPR), a L-proline biosynthetic pathway (PBP) enzyme that catalyzes the NADPH dependent reduction of L-gamma-glutamyl 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The glutamate route of the PBP involves two enzymatic steps catalyzed by gamma-glutamyl kinase (GK, EC 2.7.2.11) and GPR (EC 1.2.1.41). These enzymes are fused into the bifunctional enzyme, ProA or delta(1)-pyrroline-5-carboxylate synthetase (P5CS) in plants and animals, whereas they are separate enzymes in bacteria and yeast. In humans, the P5CS (ALDH18A1), an inner mitochondrial membrane enzyme, is essential to the de novo synthesis of the amino acids proline and arginine. Tomato (Lycopersicon esculentum) has both the prokaryotic-like polycistronic operons encoding GK and GPR (PRO1, ALDH19) and the full-length, bifunctional P5CS (PRO2, ALDH18B1).


Pssm-ID: 143398  Cd Length: 406  Bit Score: 88.64  E-value: 7.31e-23
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1417861449   1 KIHAGPKFASYLTFS-PSEVKSLQTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTED 61
Cdd:cd07079   281 ELRGDEETLAILPGAkPATEEDWGTEYLDLILAVKVVDSLDEAIAHINRYGSGHTEAIVTEN 342
PLN02418 PLN02418
delta-1-pyrroline-5-carboxylate synthase
1-61 6.41e-19

delta-1-pyrroline-5-carboxylate synthase


Pssm-ID: 215230  Cd Length: 718  Bit Score: 77.84  E-value: 6.41e-19
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1417861449   1 KIHAGPKFASYLTFSpsEVKSLQTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTED 61
Cdd:PLN02418  575 TLYGGPRASKLLNIP--EAQSFHHEYSSLACTVEIVDDVHAAIDHIHRHGSAHTDCIVTED 633
ProA COG0014
Gamma-glutamyl phosphate reductase [Amino acid transport and metabolism]; Gamma-glutamyl ...
24-61 1.96e-17

Gamma-glutamyl phosphate reductase [Amino acid transport and metabolism]; Gamma-glutamyl phosphate reductase is part of the Pathway/BioSystem: Proline biosynthesis


Pssm-ID: 439785  Cd Length: 414  Bit Score: 73.50  E-value: 1.96e-17
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1417861449  24 TEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTED 61
Cdd:COG0014   308 TEYLDLILAVKVVDSLDEAIAHINRYGSGHTEAIVTED 345
 
Name Accession Description Interval E-value
P5CS TIGR01092
delta l-pyrroline-5-carboxylate synthetase; This protein contains a glutamate 5-kinase (ProB, ...
1-61 1.09e-31

delta l-pyrroline-5-carboxylate synthetase; This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region. [Amino acid biosynthesis, Glutamate family]


Pssm-ID: 130164 [Multi-domain]  Cd Length: 715  Bit Score: 114.24  E-value: 1.09e-31
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1417861449   1 KIHAGPKFASYLTFSPSEVKSLQTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTED 61
Cdd:TIGR01092 567 TIHGGPRFAAYLTFNISETKSFRTEYSSLACTVEIVDDVYDAIDHIHKHGSAHTDCIVTED 627
ALDH_F18-19_ProA-GPR cd07079
Gamma-glutamyl phosphate reductase (GPR), aldehyde dehydrogenase families 18 and 19; ...
1-61 7.31e-23

Gamma-glutamyl phosphate reductase (GPR), aldehyde dehydrogenase families 18 and 19; Gamma-glutamyl phosphate reductase (GPR), a L-proline biosynthetic pathway (PBP) enzyme that catalyzes the NADPH dependent reduction of L-gamma-glutamyl 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The glutamate route of the PBP involves two enzymatic steps catalyzed by gamma-glutamyl kinase (GK, EC 2.7.2.11) and GPR (EC 1.2.1.41). These enzymes are fused into the bifunctional enzyme, ProA or delta(1)-pyrroline-5-carboxylate synthetase (P5CS) in plants and animals, whereas they are separate enzymes in bacteria and yeast. In humans, the P5CS (ALDH18A1), an inner mitochondrial membrane enzyme, is essential to the de novo synthesis of the amino acids proline and arginine. Tomato (Lycopersicon esculentum) has both the prokaryotic-like polycistronic operons encoding GK and GPR (PRO1, ALDH19) and the full-length, bifunctional P5CS (PRO2, ALDH18B1).


Pssm-ID: 143398  Cd Length: 406  Bit Score: 88.64  E-value: 7.31e-23
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1417861449   1 KIHAGPKFASYLTFS-PSEVKSLQTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTED 61
Cdd:cd07079   281 ELRGDEETLAILPGAkPATEEDWGTEYLDLILAVKVVDSLDEAIAHINRYGSGHTEAIVTEN 342
ALDH-like cd07077
NAD(P)+-dependent aldehyde dehydrogenase-like (ALDH-like) family; The aldehyde ...
1-61 1.67e-19

NAD(P)+-dependent aldehyde dehydrogenase-like (ALDH-like) family; The aldehyde dehydrogenase-like (ALDH-like) group of the ALDH superfamily of NAD(P)+-dependent enzymes which, in general, oxidize a wide range of endogenous and exogenous aliphatic and aromatic aldehydes to their corresponding carboxylic acids and play an important role in detoxification. This group includes families ALDH18, ALDH19, and ALDH20 and represents such proteins as gamma-glutamyl phosphate reductase, LuxC-like acyl-CoA reductase, and coenzyme A acylating aldehyde dehydrogenase. All of these proteins have a conserved cysteine that aligns with the catalytic cysteine of the ALDH group.


Pssm-ID: 143396 [Multi-domain]  Cd Length: 397  Bit Score: 79.19  E-value: 1.67e-19
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1417861449   1 KIHAGPKFASYLTFsPSEVKSLQTEYGDLELCIEVVDN---VQDAIDHIHKYGSSHTDVIVTED 61
Cdd:cd07077   272 KVPQETKPLSKETT-PSFDDEALESMTPLECQFRVLDVisaVENAWMIIESGGGPHTRCVYTHK 334
PLN02418 PLN02418
delta-1-pyrroline-5-carboxylate synthase
1-61 6.41e-19

delta-1-pyrroline-5-carboxylate synthase


Pssm-ID: 215230  Cd Length: 718  Bit Score: 77.84  E-value: 6.41e-19
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1417861449   1 KIHAGPKFASYLTFSpsEVKSLQTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTED 61
Cdd:PLN02418  575 TLYGGPRASKLLNIP--EAQSFHHEYSSLACTVEIVDDVHAAIDHIHRHGSAHTDCIVTED 633
ProA COG0014
Gamma-glutamyl phosphate reductase [Amino acid transport and metabolism]; Gamma-glutamyl ...
24-61 1.96e-17

Gamma-glutamyl phosphate reductase [Amino acid transport and metabolism]; Gamma-glutamyl phosphate reductase is part of the Pathway/BioSystem: Proline biosynthesis


Pssm-ID: 439785  Cd Length: 414  Bit Score: 73.50  E-value: 1.96e-17
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1417861449  24 TEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTED 61
Cdd:COG0014   308 TEYLDLILAVKVVDSLDEAIAHINRYGSGHTEAIVTED 345
proA PRK00197
gamma-glutamyl phosphate reductase; Provisional
24-61 2.72e-17

gamma-glutamyl phosphate reductase; Provisional


Pssm-ID: 234685  Cd Length: 417  Bit Score: 73.18  E-value: 2.72e-17
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1417861449  24 TEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTED 61
Cdd:PRK00197  311 TEYLDLILAVKVVDSLDEAIAHINRYGSGHTEAIVTED 348
proA TIGR00407
gamma-glutamyl phosphate reductase; The related model TIGR01092 describes a full-length fusion ...
1-61 1.94e-12

gamma-glutamyl phosphate reductase; The related model TIGR01092 describes a full-length fusion protein delta l-pyrroline-5-carboxylate synthetase that includes a gamma-glutamyl phosphate reductase region as described by this model. Alternate name: glutamate-5-semialdehyde dehydrogenase. The prosite motif begins at residue 332 of the seed alignment although not all of the members of the family exactly obey the motif. [Amino acid biosynthesis, Glutamate family]


Pssm-ID: 161862  Cd Length: 398  Bit Score: 59.41  E-value: 1.94e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1417861449   1 KIHAGPKFASYLTFSPSEV-----KSLQTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTED 61
Cdd:TIGR00407 275 TIHADAYALKLLELGPATEaivckTDFDKEFLSLDLSVKIVESLEAAIQHINQYGTQHSDAILTEN 340
ALDH-SF cd06534
NAD(P)+-dependent aldehyde dehydrogenase superfamily; The aldehyde dehydrogenase superfamily ...
7-61 5.24e-05

NAD(P)+-dependent aldehyde dehydrogenase superfamily; The aldehyde dehydrogenase superfamily (ALDH-SF) of NAD(P)+-dependent enzymes, in general, oxidize a wide range of endogenous and exogenous aliphatic and aromatic aldehydes to their corresponding carboxylic acids and play an important role in detoxification. Besides aldehyde detoxification, many ALDH isozymes possess multiple additional catalytic and non-catalytic functions such as participating in metabolic pathways, or as binding proteins, or osmoregulants, to mention a few. The enzyme has three domains, a NAD(P)+ cofactor-binding domain, a catalytic domain, and a bridging domain; and the active enzyme is generally either homodimeric or homotetrameric. The catalytic mechanism is proposed to involve cofactor binding, resulting in a conformational change and activation of an invariant catalytic cysteine nucleophile. The cysteine and aldehyde substrate form an oxyanion thiohemiacetal intermediate resulting in hydride transfer to the cofactor and formation of a thioacylenzyme intermediate. Hydrolysis of the thioacylenzyme and release of the carboxylic acid product occurs, and in most cases, the reduced cofactor dissociates from the enzyme. The evolutionary phylogenetic tree of ALDHs appears to have an initial bifurcation between what has been characterized as the classical aldehyde dehydrogenases, the ALDH family (ALDH) and extended family members or aldehyde dehydrogenase-like (ALDH-L) proteins. The ALDH proteins are represented by enzymes which share a number of highly conserved residues necessary for catalysis and cofactor binding and they include such proteins as retinal dehydrogenase, 10-formyltetrahydrofolate dehydrogenase, non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase, delta(1)-pyrroline-5-carboxylate dehydrogenases, alpha-ketoglutaric semialdehyde dehydrogenase, alpha-aminoadipic semialdehyde dehydrogenase, coniferyl aldehyde dehydrogenase and succinate-semialdehyde dehydrogenase. Included in this larger group are all human, Arabidopsis, Tortula, fungal, protozoan, and Drosophila ALDHs identified in families ALDH1 through ALDH22 with the exception of families ALDH18, ALDH19, and ALDH20 which are present in the ALDH-like group. The ALDH-like group is represented by such proteins as gamma-glutamyl phosphate reductase, LuxC-like acyl-CoA reductase, and coenzyme A acylating aldehyde dehydrogenase. All of these proteins have a conserved cysteine that aligns with the catalytic cysteine of the ALDH group.


Pssm-ID: 143395 [Multi-domain]  Cd Length: 367  Bit Score: 38.36  E-value: 5.24e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1417861449   7 KFASYLTFSPSEVKSLQTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTED 61
Cdd:cd06534   254 KLVTVLVDVDPDMPIAQEEIFGPVLPVIRFKDEEEAIALANDTEYGLTAGVFTRD 308
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH