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Conserved domains on  [gi|1494235676|gb|AYM84997|]
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cytochrome b (mitochondrion) [Eucoptacra sp. OR509]

Protein Classification

cytochrome b/b6( domain architecture ID 11475928)

cytochrome b/b6 (PetB) is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme; cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes; in plants and cyanobacteria, cytochrome b6 is analogous to cytochrome b and contains two chains: helices A-D (encoded by petB) and helices E-H (encoded by petD)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 14-368 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 679.58  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676  14 ISIMNNSLIDLPTPSNISFWWNLGSLLGLCLMIQIFTGLFLTMHYTPNIETAFSSVIHICRDVNNGWIIRTLHANGASMF 93
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676  94 FICIYLHVGRGIYYGSYMYMQTWMIGTMILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGMDMVQWVWGGFAV 173
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676 174 DNATLNRFFTFHFVLPFMIAAMAMIHLFFLHLTGSNNPMGLNSNTDKIPFHPYFMFKDLITFVLMTSLLIMLCLINPYLL 253
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676 254 GDPDNFVPANPLITPVHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMIMPFYNKMKFRGIQFYPINQIMFWIMVT 333
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 1494235676 334 VVCLLTWIGKRPVEEPYIMTGQILTIMYFLYFLIN 368
Cdd:MTH00156  321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 14-368 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 679.58  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676  14 ISIMNNSLIDLPTPSNISFWWNLGSLLGLCLMIQIFTGLFLTMHYTPNIETAFSSVIHICRDVNNGWIIRTLHANGASMF 93
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676  94 FICIYLHVGRGIYYGSYMYMQTWMIGTMILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGMDMVQWVWGGFAV 173
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676 174 DNATLNRFFTFHFVLPFMIAAMAMIHLFFLHLTGSNNPMGLNSNTDKIPFHPYFMFKDLITFVLMTSLLIMLCLINPYLL 253
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676 254 GDPDNFVPANPLITPVHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMIMPFYNKMKFRGIQFYPINQIMFWIMVT 333
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 1494235676 334 VVCLLTWIGKRPVEEPYIMTGQILTIMYFLYFLIN 368
Cdd:MTH00156  321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
14-367 1.84e-120

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 354.10  E-value: 1.84e-120
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676  14 ISIMNNSLIDLPTPSNISFWWNLGSLLGLCLMIQIFTGLFLTMHYTPNIETAFSSVIHICRDVNNGWIIRTLHANGASMF 93
Cdd:COG1290    20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676  94 FICIYLHVGRGIYYGSYMYMQ--TWMIGTMILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGMDMVQWVWGGF 171
Cdd:COG1290   100 FAAVYLHMFRGFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGE 179

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676 172 AVDNATLNRFFTFH-FVLPFMIAAMAMIHLFFLHLTGSNNPMG----LNSNTDKIPFHPYFMFKDLITFVLMtsLLIMLC 246
Cdd:COG1290   180 FPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVF--LGVFAL 257

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676 247 LINPYLLGDPDNFVPANPLITPVHIQPEWYFLFAYAILRSIP--NKLGGVIALFMSISILMIMPFYNKMKFRGIQFYPIN 324
Cdd:COG1290   258 LAFFFPINPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVR 337

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|...
gi 1494235676 325 QIMFWIMVTVVCLLTWIGKRPveEPYIMTGQILTIMYFLYFLI 367
Cdd:COG1290   338 TALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLI 378
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 12-209 1.42e-85

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 258.07  E-value: 1.42e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676  12 PLISIMNNSLIDLPTPSNISFWWNLGSLLGLCLMIQIFTGLFLTMHYTPNIETAFSSVIHICRDVNNGWIIRTLHANGAS 91
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676  92 MFFICIYLHVGRGIYYGSYM--YMQTWMIGTMILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGMDMVQWVWG 169
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1494235676 170 GFAVDNATLNRFFTFHFVLPFMIAAMAMIHLFFLHLTGSN 209
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
21-207 4.49e-77

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 236.12  E-value: 4.49e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676  21 LIDLPTPSNISFWWNLGSLLGLCLMIQIFTGLFLTMHYTPNIETAFSSVIHICRDVNNGWIIRTLHANGASMFFICIYLH 100
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676 101 VGRGIYYGSYMYMQ--TWMIGTMILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGMDMVQWVWGGFAVDNATL 178
Cdd:pfam00033  81 IFRGLYYGGFSYPRelTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1494235676 179 NRFFTFHFVLPFMIAAMAMIHLFFLHLTG 207
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 240-342 6.99e-10

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 57.50  E-value: 6.99e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676 240 SLLIMLCLINPYLLGDPdnfvpANPLITPVHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMIMPFY-NKMKFRGI 318
Cdd:TIGR01156  49 ACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQNP 123

                          90       100
                  ....*....|....*....|....
gi 1494235676 319 QFYPINQIMFwIMVTVVCLltWIG 342
Cdd:TIGR01156 124 FRRPVATTVF-LFGTVVAL--WLG 144
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 14-368 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 679.58  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676  14 ISIMNNSLIDLPTPSNISFWWNLGSLLGLCLMIQIFTGLFLTMHYTPNIETAFSSVIHICRDVNNGWIIRTLHANGASMF 93
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676  94 FICIYLHVGRGIYYGSYMYMQTWMIGTMILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGMDMVQWVWGGFAV 173
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676 174 DNATLNRFFTFHFVLPFMIAAMAMIHLFFLHLTGSNNPMGLNSNTDKIPFHPYFMFKDLITFVLMTSLLIMLCLINPYLL 253
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676 254 GDPDNFVPANPLITPVHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMIMPFYNKMKFRGIQFYPINQIMFWIMVT 333
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 1494235676 334 VVCLLTWIGKRPVEEPYIMTGQILTIMYFLYFLIN 368
Cdd:MTH00156  321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
CYTB MTH00145
cytochrome b; Provisional
 3-379 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 610.75  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676   3 MNKPIRTSQPLISIMNNSLIDLPTPSNISFWWNLGSLLGLCLMIQIFTGLFLTMHYTPNIETAFSSVIHICRDVNNGWII 82
Cdd:MTH00145    1 MLSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676  83 RTLHANGASMFFICIYLHVGRGIYYGSYMYMQTWMIGTMILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGMD 162
Cdd:MTH00145   81 RSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKM 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676 163 MVQWVWGGFAVDNATLNRFFTFHFVLPFMIAAMAMIHLFFLHLTGSNNPMGLNSNTDKIPFHPYFMFKDLITFVLMTSLL 242
Cdd:MTH00145  161 LVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676 243 IMLCLINPYLLGDPDNFVPANPLITPVHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMIMPFYNKMKFRGIQFYP 322
Cdd:MTH00145  241 VFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1494235676 323 INQIMFWIMVTVVCLLTWIGKRPVEEPYIMTGQILTIMYFLYFLINIHMTTMWDMLI 379
Cdd:MTH00145  321 LNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLILPLVQKLWDNIL 377
CYTB MTH00119
cytochrome b; Provisional
 3-367 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 598.81  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676   3 MNKPIRTSQPLISIMNNSLIDLPTPSNISFWWNLGSLLGLCLMIQIFTGLFLTMHYTPNIETAFSSVIHICRDVNNGWII 82
Cdd:MTH00119    1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676  83 RTLHANGASMFFICIYLHVGRGIYYGSYMYMQTWMIGTMILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGMD 162
Cdd:MTH00119   81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676 163 MVQWVWGGFAVDNATLNRFFTFHFVLPFMIAAMAMIHLFFLHLTGSNNPMGLNSNTDKIPFHPYFMFKDLITFVLMTSLL 242
Cdd:MTH00119  161 LVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676 243 IMLCLINPYLLGDPDNFVPANPLITPVHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMIMPFYNKMKFRGIQFYP 322
Cdd:MTH00119  241 LTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRP 320

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*
gi 1494235676 323 INQIMFWIMVTVVCLLTWIGKRPVEEPYIMTGQILTIMYFLYFLI 367
Cdd:MTH00119  321 LSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLI 365
CYTB MTH00191
cytochrome b; Provisional
 7-367 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 597.67  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676   7 IRTSQPLISIMNNSLIDLPTPSNISFWWNLGSLLGLCLMIQIFTGLFLTMHYTPNIETAFSSVIHICRDVNNGWIIRTLH 86
Cdd:MTH00191    1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676  87 ANGASMFFICIYLHVGRGIYYGSYMYMQTWMIGTMILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGMDMVQW 166
Cdd:MTH00191   81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676 167 VWGGFAVDNATLNRFFTFHFVLPFMIAAMAMIHLFFLHLTGSNNPMGLNSNTDKIPFHPYFMFKDLITFVLMTSLLIMLC 246
Cdd:MTH00191  161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLV 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676 247 LINPYLLGDPDNFVPANPLITPVHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMIMPFYNKMKFRGIQFYPINQI 326
Cdd:MTH00191  241 LFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQV 320

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 1494235676 327 MFWIMVTVVCLLTWIGKRPVEEPYIMTGQILTIMYFLYFLI 367
Cdd:MTH00191  321 VFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLL 361
CYTB MTH00131
cytochrome b; Provisional
 7-367 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 596.63  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676   7 IRTSQPLISIMNNSLIDLPTPSNISFWWNLGSLLGLCLMIQIFTGLFLTMHYTPNIETAFSSVIHICRDVNNGWIIRTLH 86
Cdd:MTH00131    4 LRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLH 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676  87 ANGASMFFICIYLHVGRGIYYGSYMYMQTWMIGTMILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGMDMVQW 166
Cdd:MTH00131   84 ANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQW 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676 167 VWGGFAVDNATLNRFFTFHFVLPFMIAAMAMIHLFFLHLTGSNNPMGLNSNTDKIPFHPYFMFKDLITFVLMTSLLIMLC 246
Cdd:MTH00131  164 IWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLA 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676 247 LINPYLLGDPDNFVPANPLITPVHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMIMPFYNKMKFRGIQFYPINQI 326
Cdd:MTH00131  244 LFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQF 323

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 1494235676 327 MFWIMVTVVCLLTWIGKRPVEEPYIMTGQILTIMYFLYFLI 367
Cdd:MTH00131  324 LFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLV 364
CYTB MTH00100
cytochrome b; Provisional
 6-374 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 593.54  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676   6 PIRTSQPLISIMNNSLIDLPTPSNISFWWNLGSLLGLCLMIQIFTGLFLTMHYTPNIETAFSSVIHICRDVNNGWIIRTL 85
Cdd:MTH00100    3 NIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676  86 HANGASMFFICIYLHVGRGIYYGSYMYMQTWMIGTMILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGMDMVQ 165
Cdd:MTH00100   83 HANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676 166 WVWGGFAVDNATLNRFFTFHFVLPFMIAAMAMIHLFFLHLTGSNNPMGLNSNTDKIPFHPYFMFKDLITFVLMTSLLIML 245
Cdd:MTH00100  163 WIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLL 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676 246 CLINPYLLGDPDNFVPANPLITPVHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMIMPFYNKMKFRGIQFYPINQ 325
Cdd:MTH00100  243 VLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQ 322

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*....
gi 1494235676 326 IMFWIMVTVVCLLTWIGKRPVEEPYIMTGQILTIMYFLYFLINIHMTTM 374
Cdd:MTH00100  323 CLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASL 371
CYTB MTH00074
cytochrome b; Provisional
 3-376 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 591.27  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676   3 MNKPIRTSQPLISIMNNSLIDLPTPSNISFWWNLGSLLGLCLMIQIFTGLFLTMHYTPNIETAFSSVIHICRDVNNGWII 82
Cdd:MTH00074    1 MAHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLM 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676  83 RTLHANGASMFFICIYLHVGRGIYYGSYMYMQTWMIGTMILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGMD 162
Cdd:MTH00074   81 RNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676 163 MVQWVWGGFAVDNATLNRFFTFHFVLPFMIAAMAMIHLFFLHLTGSNNPMGLNSNTDKIPFHPYFMFKDLITFVLMTSLL 242
Cdd:MTH00074  161 LVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTAL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676 243 IMLCLINPYLLGDPDNFVPANPLITPVHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMIMPFYNKMKFRGIQFYP 322
Cdd:MTH00074  241 ALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1494235676 323 INQIMFWIMVTVVCLLTWIGKRPVEEPYIMTGQILTIMYFLYFLINIHMTTMWD 376
Cdd:MTH00074  321 LTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLE 374
CYTB MTH00016
cytochrome b; Validated
 3-380 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 577.78  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676   3 MNKPIRTSQPLISIMNNSLIDLPTPSNISFWWNLGSLLGLCLMIQIFTGLFLTMHYTPNIETAFSSVIHICRDVNNGWII 82
Cdd:MTH00016    1 MFSPMRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676  83 RTLHANGASMFFICIYLHVGRGIYYGSYMYMQTWMIGTMILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGMD 162
Cdd:MTH00016   81 RNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKM 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676 163 MVQWVWGGFAVDNATLNRFFTFHFVLPFMIAAMAMIHLFFLHLTGSNNPMGLNSNTDKIPFHPYFMFKDLITFVLMTSLL 242
Cdd:MTH00016  161 LVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676 243 IMLCLINPYLLGDPDNFVPANPLITPVHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMIMPFYNKMKFRGIQFYP 322
Cdd:MTH00016  241 LSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1494235676 323 INQIMFWIMVTVVCLLTWIGKRPVEEPYIMTGQILTIMYFLYFLINIHMTTMWDMLIK 380
Cdd:MTH00016  321 LNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMINPLLMKLWDKLLK 378
CYTB MTH00034
cytochrome b; Validated
 6-367 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 545.46  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676   6 PIRTSQPLISIMNNSLIDLPTPSNISFWWNLGSLLGLCLMIQIFTGLFLTMHYTPNIETAFSSVIHICRDVNNGWIIRTL 85
Cdd:MTH00034    3 PLRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNI 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676  86 HANGASMFFICIYLHVGRGIYYGSYMYMQTWMIGTMILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGMDMVQ 165
Cdd:MTH00034   83 HANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQ 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676 166 WVWGGFAVDNATLNRFFTFHFVLPFMIAAMAMIHLFFLHLTGSNNPMGLNSNTDKIPFHPYFMFKDLITFVLMTSLLIML 245
Cdd:MTH00034  163 WIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSL 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676 246 CLINPYLLGDPDNFVPANPLITPVHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMIMPFYNKMKFRGIQFYPINQ 325
Cdd:MTH00034  243 ALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQ 322

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 1494235676 326 IMFWIMVTVVCLLTWIGKRPVEEPYIMTGQILTIMYFLYFLI 367
Cdd:MTH00034  323 IAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLF 364
CYTB MTH00224
cytochrome b; Provisional
 3-380 0e+00

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 511.39  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676   3 MNKPIRTSQPLISIMNNSLIDLPTPSNISFWWNLGSLLGLCLMIQIFTGLFLTMHYTPNIETAFSSVIHICRDVNNGWII 82
Cdd:MTH00224    1 MFKPFRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676  83 RTLHANGASMFFICIYLHVGRGIYYGSYMYMQTWMIGTMILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGMD 162
Cdd:MTH00224   81 RSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKD 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676 163 MVQWVWGGFAVDNATLNRFFTFHFVLPFMIAAMAMIHLFFLHLTGSNNPMGLNSNTDKIPFHPYFMFKDLITFVLMTSLL 242
Cdd:MTH00224  161 LVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676 243 IMLCLINPYLLGDPDNFVPANPLITPVHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMIMPFYNKMKFRGIQFYP 322
Cdd:MTH00224  241 SLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1494235676 323 INQIMFWIMVTVVCLLTWIGKRPVEEPYIMTGQILTIMYFLYFLINIHMTTMWDMLIK 380
Cdd:MTH00224  321 LNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYFIISPAISKLWDDLLN 378
CYTB MTH00022
cytochrome b; Validated
 6-369 2.26e-176

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 495.76  E-value: 2.26e-176
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676   6 PIRTSQPLISIMNNSLIDLPTPSNISFWWNLGSLLGLCLMIQIFTGLFLTMHYTPNIETAFSSVIHICRDVNNGWIIRTL 85
Cdd:MTH00022    2 PLRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676  86 HANGASMFFICIYLHVGRGIYYGSYMYMQTWMIGTMILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGMDMVQ 165
Cdd:MTH00022   82 HANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQ 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676 166 WVWGGFAVDNATLNRFFTFHFVLPFMIAAMAMIHLFFLHLTGSNNPMGLNSNTDKIPFHPYFMFKDLITFVLMTSLLIML 245
Cdd:MTH00022  162 WVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFI 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676 246 CLINPYLLGDPDNFVPANPLITPVHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMIMPFYNKMKFRGIQFYPINQ 325
Cdd:MTH00022  242 VYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGR 321

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 1494235676 326 IMFWIMVTVVCLLTWIGKRPVEEPYIMTGQILTIMYFLYFLINI 369
Cdd:MTH00022  322 MAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLI 365
CYTB MTH00053
cytochrome b; Provisional
 3-367 3.34e-175

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 492.68  E-value: 3.34e-175
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676   3 MNKPIRTSQPLISIMNNSLIDLPTPSNISFWWNLGSLLGLCLMIQIFTGLFLTMHYTPNIETAFSSVIHICRDVNNGWII 82
Cdd:MTH00053    1 MTKTIRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFIL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676  83 RTLHANGASMFFICIYLHVGRGIYYGSYMYMQTWMIGTMILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGMD 162
Cdd:MTH00053   81 RYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDD 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676 163 MVQWVWGGFAVDNATLNRFFTFHFVLPFMIAAMAMIHLFFLHLTGSNNPMGLNSNTDKIPFHPYFMFKDLITFVLMTSLL 242
Cdd:MTH00053  161 IVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIIL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676 243 IMLCLINPYLLGDPDNFVPANPLITPVHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMIMPFYNKMKFRGIQFYP 322
Cdd:MTH00053  241 SIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRP 320

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*
gi 1494235676 323 INQIMFWIMVTVVCLLTWIGKRPVEEPYIMTGQILTIMYFLYFLI 367
Cdd:MTH00053  321 LSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLI 365
CYTB MTH00033
cytochrome b; Provisional
 19-367 3.32e-134

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 388.91  E-value: 3.32e-134
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676  19 NSLIDLPTPSNISFWWNLGSLLGLCLMIQIFTGLFLTMHYTPNIETAFSSVIHICRDVNNGWIIRTLHANGASMFFICIY 98
Cdd:MTH00033   13 NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVY 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676  99 LHVGRGIYYGSYMYMQTWMIGTMILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGMDMVQWVWGGFAVDNATL 178
Cdd:MTH00033   93 CHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTL 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676 179 NRFFTFHFVLPFMIAAMAMIHLFFLHLTGSNNPMGLNSNTDKIPFHPYFMFKDLITFVLMTSLLIMLClINPY---LLGD 255
Cdd:MTH00033  173 NRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIG-IEPRietLLQD 251

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676 256 PDNFVPANPLITPVHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMIMPFYNKMKFRGIQFYPINQIMFWIMVTVV 335
Cdd:MTH00033  252 PENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDF 331

                         330       340       350
                  ....*....|....*....|....*....|...
gi 1494235676 336 CLLTWIGKRPV-EEPYIMTGQILTIMYFLYFLI 367
Cdd:MTH00033  332 IILTWIGSAPAgADPYVLIGRIATIFYFGYFLV 364
CYTB MTH00086
cytochrome b; Provisional
 15-367 9.41e-123

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 358.48  E-value: 9.41e-123
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676  15 SIMNNSLIDLPTPSNISFWWNLGSLLGLCLMIQIFTGLFLTMHYTPNIETAFSSVIHICRDVNNGWIIRTLHANGASMFF 94
Cdd:MTH00086    1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676  95 ICIYLHVGRGIYYGSYMYMQTWMIGTMILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGMDMVQWVWGGFAVD 174
Cdd:MTH00086   81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676 175 NATLNRFFTFHFVLPFMIAAMAMIHLFFLHLTGSNNPMGLNSNTDKIPFHPYFMFKDLITFVLMTsLLIMLCLINPYLLG 254
Cdd:MTH00086  161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWL-VFIIFSLFYPFNLG 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676 255 DPDNFVPANPLITPVHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMIMPFYNkmkFRGIQFYPINQIMFWIMVTV 334
Cdd:MTH00086  240 DPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVN---NYTSCLNKLNKFLVFSFIVV 316

                         330       340       350
                  ....*....|....*....|....*....|...
gi 1494235676 335 VCLLTWIGKRPVEEPYIMTGQILTIMYFLYFLI 367
Cdd:MTH00086  317 NVILSWLGQCLVEYPFLFLSQIFSFIYFFLILL 349
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
14-367 1.84e-120

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 354.10  E-value: 1.84e-120
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676  14 ISIMNNSLIDLPTPSNISFWWNLGSLLGLCLMIQIFTGLFLTMHYTPNIETAFSSVIHICRDVNNGWIIRTLHANGASMF 93
Cdd:COG1290    20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676  94 FICIYLHVGRGIYYGSYMYMQ--TWMIGTMILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGMDMVQWVWGGF 171
Cdd:COG1290   100 FAAVYLHMFRGFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGE 179

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676 172 AVDNATLNRFFTFH-FVLPFMIAAMAMIHLFFLHLTGSNNPMG----LNSNTDKIPFHPYFMFKDLITFVLMtsLLIMLC 246
Cdd:COG1290   180 FPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVF--LGVFAL 257

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676 247 LINPYLLGDPDNFVPANPLITPVHIQPEWYFLFAYAILRSIP--NKLGGVIALFMSISILMIMPFYNKMKFRGIQFYPIN 324
Cdd:COG1290   258 LAFFFPINPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVR 337

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|...
gi 1494235676 325 QIMFWIMVTVVCLLTWIGKRPveEPYIMTGQILTIMYFLYFLI 367
Cdd:COG1290   338 TALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLI 378
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 12-209 1.42e-85

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 258.07  E-value: 1.42e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676  12 PLISIMNNSLIDLPTPSNISFWWNLGSLLGLCLMIQIFTGLFLTMHYTPNIETAFSSVIHICRDVNNGWIIRTLHANGAS 91
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676  92 MFFICIYLHVGRGIYYGSYM--YMQTWMIGTMILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGMDMVQWVWG 169
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1494235676 170 GFAVDNATLNRFFTFHFVLPFMIAAMAMIHLFFLHLTGSN 209
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00046
cytochrome b; Validated
 13-367 4.08e-82

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 254.91  E-value: 4.08e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676  13 LISIMNNSLIDLPTPSNISFWWNLGSLLGLCLMIQIFTGLFLTMHYTPNIETAFSSVIHICRDVNNGWIIRTLHANGASM 92
Cdd:MTH00046    1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676  93 FFICIYLHVGRGIYYGSYMYMQTWMIGTMILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGMDMVQWVWGGFA 172
Cdd:MTH00046   81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676 173 VDNATLNRFFTFHFVLPFMIAAMAMIHLFFLHLTGSNNPMGL-NSNTDKIPFHPYFMFKDLITFVLMTSLLIMLCLINPY 251
Cdd:MTH00046  161 VTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSsNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPD 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676 252 LLGDPDNFVPANPLITPVHIQPEWYFLFAYAILRSIPNKLGGVIaLFMSISILMIMPFYNkmkfrGIQFYPI-NQIMFWI 330
Cdd:MTH00046  241 LVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLV-LVLSFLFFLWVPTFN-----GSSVYSVwRQVNFWL 314

                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 1494235676 331 MVTVVCLLTWIGKRPVEEPYIMTGQILTIMYFLYFLI 367
Cdd:MTH00046  315 IVSLFFSLSYLGGCHPEYPYLLISQLFSVLMVLLLFI 351
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
21-207 4.49e-77

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 236.12  E-value: 4.49e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676  21 LIDLPTPSNISFWWNLGSLLGLCLMIQIFTGLFLTMHYTPNIETAFSSVIHICRDVNNGWIIRTLHANGASMFFICIYLH 100
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676 101 VGRGIYYGSYMYMQ--TWMIGTMILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGMDMVQWVWGGFAVDNATL 178
Cdd:pfam00033  81 IFRGLYYGGFSYPRelTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1494235676 179 NRFFTFHFVLPFMIAAMAMIHLFFLHLTG 207
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 210-356 2.30e-48

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 160.89  E-value: 2.30e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676 210 NPMGLNSNTDKIPFHPYFMFKDLITFVLMTSLLIMLCLINPYLLGDPDNFVPANPLITPVHIQPEWYFLFAYAILRSIPN 289
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1494235676 290 KLGGVIALFMSISILMIMPFYNKMKFRGiQFYPINQIMFWIMVTVVCLLTWIGKRPVEEPYIMTGQI 356
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQL 146
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
91-256 1.86e-46

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 156.63  E-value: 1.86e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676  91 SMFFICIYLHVGRGIYYGSYMYMQ--TWMIGTMILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGMDMVQWVW 168
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676 169 GGFAVDNATLNRFFTFHF-VLPFMIAAMAMIHLFFLHLTGSNNPMGLNSNTDKIPFHPYFMFKDLITFVLMTSLLIMLCL 247
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 1494235676 248 INPYLLGDP 256
Cdd:pfam13631 161 INPIWLGGP 169
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
261-361 9.92e-42

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 141.85  E-value: 9.92e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676 261 PANPLITPVHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMIMPFYNKMKFRGIQFYPINQIMFWIMVTVVCLLTW 340
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 1494235676 341 IGKRPVEEPYIMTGQILTIMY 361
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
PRK03735 PRK03735
cytochrome b6; Provisional
 25-212 1.37e-36

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 132.53  E-value: 1.37e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676  25 PTPSNISFWWNLGSLLGLCLMIQIFTGLFLTMHYTPNIETAFSSVIHICRDVNNGWIIRTLHANGASMFFICIYLHVGRG 104
Cdd:PRK03735   33 PAHHFSAFVYCFGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRV 112

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676 105 IYYGSYMYMQ--TWMIGTMILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGMDMVQWVWGGFAVDNATLNRFF 182
Cdd:PRK03735  113 FFTGGYKKPRelNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFF 192

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1494235676 183 TFH-FVLPFMIAAMAMIHLFFLHLTGSNNPM 212
Cdd:PRK03735  193 AIHvFFLPWALAVLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 27-212 3.22e-29

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 112.51  E-value: 3.22e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676  27 PSNISFWWNLGSLLGLCLMIQIFTGLFLTMHYTPNIETAFSSVIHICRDVNNGWIIRTLHANGASMFFICIYLHVGRGIY 106
Cdd:CHL00070   27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676 107 YGSYMYMQ--TWMIGTMILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGMDMVQWVWGGFAVDNATLNRFFTF 184
Cdd:CHL00070  107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                         170       180
                  ....*....|....*....|....*....
gi 1494235676 185 H-FVLPFMIAAMAMIHLFFLHLTGSNNPM 212
Cdd:CHL00070  187 HtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 240-348 1.15e-10

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 59.81  E-value: 1.15e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676 240 SLLIMLCLINPYLLGDPdnfvpANPLITPVHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMIMPFY-NKMKFRGI 318
Cdd:COG5679    50 ALCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIeNVNKFQNP 124

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1494235676 319 QFYPINQIMFwIMVTVVCLLTWIGKR-PVEE 348
Cdd:COG5679   125 FRRPVATAVF-LFGTLVTLWLGIGAAlPIDK 154
petD CHL00058
cytochrome b6/f complex subunit IV
 240-342 3.34e-10

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 58.09  E-value: 3.34e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676 240 SLLIMLCLINPYLLGDPdnfvpANPLITPVHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMIMPFY-NKMKFRGI 318
Cdd:CHL00058   49 ACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLeNVNKFQNP 123

                          90       100
                  ....*....|....*....|....
gi 1494235676 319 QFYPINQIMFwIMVTVVCLLTWIG 342
Cdd:CHL00058  124 FRRPVATTVF-LIGTAVALWLGIG 146
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 240-342 6.99e-10

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 57.50  E-value: 6.99e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235676 240 SLLIMLCLINPYLLGDPdnfvpANPLITPVHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMIMPFY-NKMKFRGI 318
Cdd:TIGR01156  49 ACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQNP 123

                          90       100
                  ....*....|....*....|....
gi 1494235676 319 QFYPINQIMFwIMVTVVCLltWIG 342
Cdd:TIGR01156 124 FRRPVATTVF-LFGTVVAL--WLG 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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