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Conserved domains on  [gi|1494235701|gb|AYM85020|]
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NADH dehydrogenase subunit 4 [Petamella prosternalis]

Protein Classification

NADH dehydrogenase subunit 4( domain architecture ID 11475934)

NADH dehydrogenase subunit 4 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
1-444 4.57e-172

NADH dehydrogenase subunit 4; Provisional


:

Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 489.67  E-value: 4.57e-172
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701   1 MLKYLFMIIFLTPLCLLKNIWWLVHSLMFLSSFIFMICVYFCSDLSMISYFFGVDYFSFSLIFLSFWICSLMITASGSIY 80
Cdd:MTH00163    1 MLKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSSESVY 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701  81 LSSYHSNLFIFMVLFLMIMLYCSFSSLSLLSFYIFFESSLVPTLLLILGWGYQPERLQAGIYLIFYTLFASLPLLLVLFK 160
Cdd:MTH00163   81 KKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFY 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 161 VYDYVNTLYFPLLIDFGSYYFMFYVFMILAFLVKMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISL 240
Cdd:MTH00163  161 LYNNSGSLSFFLLNFFGSLNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFFSK 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 241 MGLKFNYFWLSLGLSGGVIVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNI 320
Cdd:MTH00163  241 LGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANI 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 321 IYERLGSRSLLINKGMINLMPSMSLWWFLLSSSNMAAPPSLNLVGELSLLNSIMSWSSFSYITLIFLSFFSAVYTLYMYS 400
Cdd:MTH00163  321 IYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSAAYSLYLYS 400
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....
gi 1494235701 401 YSQHGSYYSGVYTCSLGYFREYHLLFLHWLPLNILCLKGDYFFF 444
Cdd:MTH00163  401 YSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLFML 444
 
Name Accession Description Interval E-value
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
1-444 4.57e-172

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 489.67  E-value: 4.57e-172
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701   1 MLKYLFMIIFLTPLCLLKNIWWLVHSLMFLSSFIFMICVYFCSDLSMISYFFGVDYFSFSLIFLSFWICSLMITASGSIY 80
Cdd:MTH00163    1 MLKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSSESVY 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701  81 LSSYHSNLFIFMVLFLMIMLYCSFSSLSLLSFYIFFESSLVPTLLLILGWGYQPERLQAGIYLIFYTLFASLPLLLVLFK 160
Cdd:MTH00163   81 KKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFY 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 161 VYDYVNTLYFPLLIDFGSYYFMFYVFMILAFLVKMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISL 240
Cdd:MTH00163  161 LYNNSGSLSFFLLNFFGSLNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFFSK 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 241 MGLKFNYFWLSLGLSGGVIVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNI 320
Cdd:MTH00163  241 LGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANI 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 321 IYERLGSRSLLINKGMINLMPSMSLWWFLLSSSNMAAPPSLNLVGELSLLNSIMSWSSFSYITLIFLSFFSAVYTLYMYS 400
Cdd:MTH00163  321 IYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSAAYSLYLYS 400
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....
gi 1494235701 401 YSQHGSYYSGVYTCSLGYFREYHLLFLHWLPLNILCLKGDYFFF 444
Cdd:MTH00163  401 YSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLFML 444
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
48-399 1.31e-55

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 191.83  E-value: 1.31e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701  48 ISYFFGVDYFSFSLIFLSFWICSLMITASGSIylSSYHSNLFIFMVLFLMIMLYCSFSSLSLLSFYIFFESSLVPTLLLI 127
Cdd:COG1008    74 ISYHLGVDGISLPLVLLTALLTPLAILASWNE--IKKRPKLYYALLLLLEAGMIGVFLALDLFLFYVFWELMLIPMYFLI 151
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 128 LGWGYqPERLQAGIYLIFYTLFASLPLLLVLFKVYDYVNTLYFPLL------IDFGSYYFMFYVFMIlAFLVKMPMFLFH 201
Cdd:COG1008   152 GIWGG-ERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALTFDIAelaaapLPLTAQLLLFLAFFI-AFAVKVPMFPFH 229
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 202 LWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVmkVISLM---GLKFNYFWLSLGLSGGVIVSFICFRQVDLKSLIAYSS 278
Cdd:COG1008   230 TWLPDAHVEAPTAGSVLLAGVLLKMGGYGLLRF--ALPLFpeaSAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSS 307
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 279 VAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMSLWWFLLSSSNMAAP 358
Cdd:COG1008   308 VSHMGFVLLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLP 387
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|...
gi 1494235701 359 PSLNLVGELSLLNSimSWSSFSYITLIFLS--FFSAVYTLYMY 399
Cdd:COG1008   388 GTSGFVGEFLVLLG--AFQVNPWLAILAALglILTAAYLLWMY 428
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
113-388 2.41e-55

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 185.59  E-value: 2.41e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 113 YIFFESSLVPTLLLILGWGYQPERLQAGIYLIFYTLFASLPLLLVLFKVYDYVNTLYFPLLIDF------GSYYFMFYVF 186
Cdd:pfam00361   8 YLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKAltgglnSSGLLLLFLL 87
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 187 MILAFLVKMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISLMGLKFNYFWLSLGLSGGVIVSFICFR 266
Cdd:pfam00361  88 ILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLLGSLAALV 167
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 267 QVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLS-NIIYERLGSRSLLINKGMINLMPSMSL 345
Cdd:pfam00361 168 QTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAKTMPILAL 247
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 1494235701 346 WWFLLSSSNMAAPPSLNLVGELSLLNSIMSWSSFSYITLIFLS 388
Cdd:pfam00361 248 VFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVG 290
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
48-399 1.62e-47

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 169.74  E-value: 1.62e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701  48 ISYFFGVDYFSFSLIFLSFWICSLMITASGsiYLSSYHSNLFIFMVLFLMIMLYCSFSSLSLLSFYIFFESSLVPTLLLI 127
Cdd:TIGR01972  69 ISYHLGVDGISLLLVLLTALLTLLAILASW--ESIQKRVKEFYALLLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLLI 146
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 128 LGWGyQPERLQAGIYLIFYTLFASLPLLL-VLFKVYDYVNTLYFPLLID----FGSYYFMFYVFMIlAFLVKMPMFLFHL 202
Cdd:TIGR01972 147 GVWG-GPNRIYAAMKFFLYTLAGSLLMLLaILGLYFLGGGTFDLLELLNlplpFGVQTWLFLAFFI-AFAVKVPLFPLHT 224
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 203 WLPKAHVEAPISGSMILAGVLLKLGGYGIFRV-MKVISLMGLKFNYFWLSLGLSGGVIVSFICFRQVDLKSLIAYSSVAH 281
Cdd:TIGR01972 225 WLPDAHVEAPTAGSVILAGVLLKMGTYGFLRFnLPLFPDASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISH 304
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 282 MSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMSLWWFLLSSSNMAAPPSL 361
Cdd:TIGR01972 305 MGFVLLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTS 384
                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 1494235701 362 NLVGELSLLNSIMSWSSFSYITLIFLSFFSAVYTLYMY 399
Cdd:TIGR01972 385 GFVGEFLILLGSFKVNPVVAFLAALGIVLAAAYMLTLY 422
 
Name Accession Description Interval E-value
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
1-444 4.57e-172

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 489.67  E-value: 4.57e-172
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701   1 MLKYLFMIIFLTPLCLLKNIWWLVHSLMFLSSFIFMICVYFCSDLSMISYFFGVDYFSFSLIFLSFWICSLMITASGSIY 80
Cdd:MTH00163    1 MLKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSSESVY 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701  81 LSSYHSNLFIFMVLFLMIMLYCSFSSLSLLSFYIFFESSLVPTLLLILGWGYQPERLQAGIYLIFYTLFASLPLLLVLFK 160
Cdd:MTH00163   81 KKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFY 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 161 VYDYVNTLYFPLLIDFGSYYFMFYVFMILAFLVKMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISL 240
Cdd:MTH00163  161 LYNNSGSLSFFLLNFFGSLNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFFSK 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 241 MGLKFNYFWLSLGLSGGVIVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNI 320
Cdd:MTH00163  241 LGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANI 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 321 IYERLGSRSLLINKGMINLMPSMSLWWFLLSSSNMAAPPSLNLVGELSLLNSIMSWSSFSYITLIFLSFFSAVYTLYMYS 400
Cdd:MTH00163  321 IYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSAAYSLYLYS 400
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....
gi 1494235701 401 YSQHGSYYSGVYTCSLGYFREYHLLFLHWLPLNILCLKGDYFFF 444
Cdd:MTH00163  401 YSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLFML 444
ND4 MTH00014
NADH dehydrogenase subunit 4; Validated
1-440 1.42e-123

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214399 [Multi-domain]  Cd Length: 452  Bit Score: 366.76  E-value: 1.42e-123
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701   1 MLKYLFMIIFLTPLCLLKNIWWLVHS---LMFLSSFIFMICVYFCSDLSMISYFFGVDYFSFSLIFLSFWICSLMITASG 77
Cdd:MTH00014    1 MLKLIMPLISLLLLPLIKYPWSWALTfstLLLLSLFTLLNLYPMSAPYSMFTESLSSDMLSAPLITLTLWITALMILASF 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701  78 SIYLSSYHSNLFIFMVLFLMIMLYCSFSSLSLLSFYIFFESSLVPTLLLILGWGYQPERLQAGIYLIFYTLFASLPLLLV 157
Cdd:MTH00014   81 KIFQNNKAPKTFMTNILILNLILLLTFSASNLLMFYIFFEASLIPTLFLILGWGYQPERLQASFYLMIYTVTASLPLLMS 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 158 LFKVYDYVNTLYFPLL-IDFGSYYF--MFYVFMILAFLVKMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRV 234
Cdd:MTH00014  161 ILLIFYTNNSLSMLMSsMEPPSIYLmnLWWLITILAFMVKMPLYTVHLWLPKAHVEAPVAGSMILAGILLKLGGYGLLRM 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 235 MKVISLMGLKFNYFWLSLGLSGGVIVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGL 314
Cdd:MTH00014  241 SSLFMHINKSLSAPFSSISLVGAVITSLICIRQPDLKSLIAYSSVGHMGLMTAGIMSNTSWGWQGALAMMIAHGLCSSAL 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 315 FCLSNIIYERLGSRSLLINKGMINLMPSMSLWWFLLSSSNMAAPPSLNLVGELSLLNSIMSWSSFSYITLIFLSFFSAVY 394
Cdd:MTH00014  321 FALANMTYETTHTRSLFLTKGLLSLFPTMTMWWFLLSAANMAAPPSINLLSEIMLLTSILSSSLSTAILLAITSFLAAAY 400
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*.
gi 1494235701 395 TLYMYSYSQHGSYYSGVYTCSLGYFREYHLLFLHWLPLNILCLKGD 440
Cdd:MTH00014  401 SLFLYTSTQHGSPPSFMNPLNLFTPRNHTLMTLHLVPLFILILKPD 446
ND4 MTH00150
NADH dehydrogenase subunit 4; Provisional
46-443 4.50e-122

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214435 [Multi-domain]  Cd Length: 417  Bit Score: 361.46  E-value: 4.50e-122
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701  46 SMISYFFGVDYFSFSLIFLSFWICSLMITASGSIYLSSYHSNLFIFMVLFLMIMLYCSFSSLSLLSFYIFFESSLVPTLL 125
Cdd:MTH00150   14 ESLSELFSVDSMSSLLISLSLWISGLMMLASQKSVKLRNKSSSFSLLVLLLCLILVLAFSVSSLLMFYFFFEASLIPTLL 93
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 126 LILGWGYQPERLQAGIYLIFYTLFASLPLLLVLFKVYDYVNTLYFPLLIDFGSYYFM---FYVFMILAFLVKMPMFLFHL 202
Cdd:MTH00150   94 LILGWGYQPERLQAGMYMMLYTVGASLPLLLVILWMSSSYGSSFMLLISSLRKLLSSmglWGLLVFLAFLVKLPMYPFHL 173
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 203 WLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISLMGLKFNYFWLSLGLSGGVIVSFICFRQVDLKSLIAYSSVAHM 282
Cdd:MTH00150  174 WLPKAHVEAPVAGSMILAGILLKLGGYGILRMMMVFSLSSSSFSIFLISLSLWGGVLTSLICLRQSDVKSLIAYSSVGHM 253
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 283 SMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMSLWWFLLSSSNMAAPPSLN 362
Cdd:MTH00150  254 SLVLAGVLSNTSWGWVGALIMMVSHGFCSSGLFCLANYTYEKVHSRSLFLSKGMLMLYPSLSLWWFLFCIINMAAPPSLN 333
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 363 LVGELSLLNSIMSWSSFSYITLIFLSFFSAVYTLYMYSYSQHGSYYSGVYTCSLGYFREYHLLFLHWLPLNILCLKGDYF 442
Cdd:MTH00150  334 LLSEIMIFPSLISYSPWFFVPLGLMVFLSGLYSLYLYTSIQHGGSSSFLKPFNELKSSEMLLLLLHWVPLLLLILKSDLL 413

                  .
gi 1494235701 443 F 443
Cdd:MTH00150  414 F 414
ND4 MTH00205
NADH dehydrogenase subunit 4; Provisional
2-444 2.23e-115

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214457 [Multi-domain]  Cd Length: 448  Bit Score: 345.43  E-value: 2.23e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701   2 LKYLFMIIFLTPLCLLKNIWW--LVHSLMFLSSFIFMICVYFCSDLSMISYFFGVDYFSFSLIFLSFWICSLMITASGSI 79
Cdd:MTH00205    1 MSIFGVFSLLIILFVLKFKDWsfFSNLLLIGLFFSSFFFSNSFLMTSFISSSFSFDSLSLPLIMLSFWISLLMVLASYKV 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701  80 YLSSYHSNLFIFMVLFLMIMLYCSFSSLSLLSFYIFFESSLVPTLLLILGWGYQPERLQAGIYLIFYTLFASLPLLLVLF 159
Cdd:MTH00205   81 FKSNKNSKLFTVSVIMLLLILILSFSVDNLLLFYITFEASLIPTLILILGWGYQPERLQASMYMMMYTLCASLPLLIGLF 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 160 KVYDYVNTLYFPLLIDFGSYYFMFYVFMI---LAFLVKMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMK 236
Cdd:MTH00205  161 FLNSLNFSLSMFFNFPLNFSDFYLFLYWIflmLAFLVKLPMYFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLIRITS 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 237 VISLMGLKFNYFWLSLGLSGGVIVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFC 316
Cdd:MTH00205  241 MLYKLNSNFSELFFSISLWGGVMTGMICLRQVDLKSLIAYSSVGHMGLMVVGVFSNTSWGMNGAIIMMVAHGLCSSGMFA 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 317 LSNIIYERLGSRSLLINKGMINLMPSMSLWWFLLSSSNMAAPPSLNLVGELSLLNSIMSWSSFSYITLIFLSFFSAVYTL 396
Cdd:MTH00205  321 LANVNYERTNSRSMLMNKGVLNTFPFLVLMWFLLISCNMAAPPSLNLASEILLIMSLLSSSKISGIPLSLISFLSGAYSL 400
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*...
gi 1494235701 397 YMYSYSQHGSYYSGVYTCSLGYFREYHLLFLHWLPLNILCLKGDYFFF 444
Cdd:MTH00205  401 YLYSQSQHGKVSSQISSFLAISEREYYILILHWFPLNILILKLKIFIC 448
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
1-438 2.13e-111

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 335.63  E-value: 2.13e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701   1 MLKYLFMIIFLTPLCLL---KNIWWLVHSLMFLSSFIFMICVYFCSDLSMIS-YFFGVDYFSFSLIFLSFWICSLMITAS 76
Cdd:MTH00124    1 MLKIILPTIMLIPTTLLskpKFLWTNTTTYSLLIALLSLQWLKPPYYPTKNLtQWLGIDQISAPLLVLSCWLLPLMILAS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701  77 GSIYLSSYHSN--LFIFMVLFLMIMLYCSFSSLSLLSFYIFFESSLVPTLLLILGWGYQPERLQAGIYLIFYTLFASLPL 154
Cdd:MTH00124   81 QNHLQHEPLQRkrTFLTTLILLQTFLILAFSATELTLFYIMFEATLIPTLILITRWGNQPERLSAGTYFLFYTLISSLPL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 155 LLVLFKVYDYVNTLYFPLLIDFGSY------YFMFYVFMILAFLVKMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGG 228
Cdd:MTH00124  161 LIAILYLHNQTGTLSLPMLQLTHPTltnswtNLLLWLACLMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGG 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 229 YGIFRVMKVISLMGLKFNYFWLSLGLSGGVIVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHG 308
Cdd:MTH00124  241 YGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWSLSGAMILMIAHG 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 309 LCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMSLWWFLLSSSNMAAPPSLNLVGELSLLNSIMSWSSFSYITLIFLS 388
Cdd:MTH00124  321 LTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNWSPTTIILTGLAT 400
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|
gi 1494235701 389 FFSAVYTLYMYSYSQHGSYYSGVYTCSLGYFREYHLLFLHWLPLNILCLK 438
Cdd:MTH00124  401 LITASYTLYMFLSTQRGTLPTHITTIQPTHTREHLLMTLHIIPLLLLILK 450
ND4 MTH00044
NADH dehydrogenase subunit 4; Validated
6-432 4.42e-106

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214411 [Multi-domain]  Cd Length: 458  Bit Score: 321.93  E-value: 4.42e-106
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701   6 FMIIFLTPLCLLKNIWwlvHSLMFLSSFIFMICVYF-----CSDLSMISYFFGVDYFSFSLIFLSFWICSLMITASGSI- 79
Cdd:MTH00044    9 LGIAITSWIVPKNKLW---PISISQSSLISLLSLFLlnnhwSSSWHNLSLSLATDSLSSPLIILSCWLAPLSLLASINHl 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701  80 -YLSSYHSNLFIFMVLFLMIMLYCSFSSLSLLSFYIFFESSLVPTLLLILGWGYQPERLQAGIYLIFYTLFASLPLLLVL 158
Cdd:MTH00044   86 sNNSPNNQRTFISLIIIILTALIITFSSLELILFYIAFETTLIPTLILITRWGAQKERIQAGLYFLFYTLFGSLPLLISL 165
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 159 FKVYDYVNTLYFPL------LIDFGSYYFMFYVFMILAFLVKMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIF 232
Cdd:MTH00044  166 IAIYSSSSSLSIPLselnwlTSLSSNSSSIWWIFCILAFLVKMPIYGFHLWLPKAHVEAPVAGSMILAAILLKLGGYGLI 245
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 233 RVMKVISLMGLKF-NYFWLSLGLSGGVIVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCS 311
Cdd:MTH00044  246 RLINLFSLPSANNiSFILIVFCCWGALITSIICLRQTDLKALIAYSSVGHMSLVAAGIFSGTNWGINGALILMIAHGLVS 325
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 312 SGLFCLSNIIYERLGSRSLLINKGMINLMPSMSLWWFLLSSSNMAAPPSLNLVGELSLLNSIMSWSSFSYITLIFLSFFS 391
Cdd:MTH00044  326 SALFCLANILYERSGTRTLSITRGFKLITPLLPLWWLIFCAANLGLPPLPNLIGELLIISSIISWSILSFPIIGLATVFG 405
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|.
gi 1494235701 392 AVYTLYMYSYSQHGSYYSGVYTCSLGYFREYHLLFLHWLPL 432
Cdd:MTH00044  406 AIYSLLIYQLTNSGSFPSWISNVSPISSREHLLIFLHLLPL 446
ND4 MTH00068
NADH dehydrogenase subunit 4; Provisional
1-438 3.55e-105

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214417 [Multi-domain]  Cd Length: 458  Bit Score: 319.55  E-value: 3.55e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701   1 MLKYLF---MIIFLTPLCLLKNIWWLVHSLMFLSSFIFMICVYFCSDLSMIS-YFFGVDYFSFSLIFLSFWICSLMITAS 76
Cdd:MTH00068    1 MLKIIIptlMLLPTTWLSPKKWLWTLTTTNSLIIAFLSLMWFNLPSETMNFTnKYFGIDQISSPLLILTCWLLPLMILAS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701  77 GSiYLSS---YHSNLFIFMVLFLMIMLYCSFSSLSLLSFYIFFESSLVPTLLLILGWGYQPERLQAGIYLIFYTLFASLP 153
Cdd:MTH00068   81 QN-HLKNepiNRQRTYISMLIILQLTLILAFSATELILFYIFFEATLIPTLIIITRWGNQEERLNAGTYFLFYTLAGSLP 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 154 LLLVLFKVYDYVNTLYFPLLIDFGSYYFM------FYVFMILAFLVKMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLG 227
Cdd:MTH00068  160 LLIALLILQNSLGSLSLILLELMSPMQLMtytnkiWWLACLLAFMVKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLG 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 228 GYGIFRVMKVISLMGLKFNYFWLSLGLSGGVIVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGH 307
Cdd:MTH00068  240 GYGILRISILLTPLSKELSYPFIILALWGVLMTSLICLRQTDLKSLIAYSSVSHMGLVIAAALIQTPWSFSGAIILMISH 319
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 308 GLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMSLWWFLLSSSNMAAPPSLNLVGELSLLNSIMSWSSFSYITLIFL 387
Cdd:MTH00068  320 GLTSSALFCLANTNYERTHSRTLLLLRGAQTILPLMATWWLLSNLSNMALPPSPNLWGELTIMVSLFNWSNWTILITGLG 399
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1494235701 388 SFFSAVYTLYMYSYSQHGSYYSGVYTCSLGYFREYHLLFLHWLPLNILCLK 438
Cdd:MTH00068  400 TLITAAYTLYMFLMTQRGPLPNHLKTLFPTYTREHLLLALHILPMLLLILK 450
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
1-437 1.61e-100

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 307.59  E-value: 1.61e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701   1 MLKYLFMIIFLTPLCLL---KNIWWLVHSLMFLSSFIFMICVYFCSDLSM-ISYFFGVDYFSFSLIFLSFWICSLMITAS 76
Cdd:MTH00110    1 MLKIIIPTIMLIPLTWLsknNMIWINTTTYSLLISLISLLLLNQPNDNSLnFSLLFFSDSLSTPLLILTTWLLPLMLMAS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701  77 GSIYL--SSYHSNLFIFMVLFLMIMLYCSFSSLSLLSFYIFFESSLVPTLLLILGWGYQPERLQAGIYLIFYTLFASLPL 154
Cdd:MTH00110   81 QHHLSkePLTRKKLYITMLILLQLFLIMTFTATELIMFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 155 LLVLFKVYDYVNTLYFPL-------LIDFGSYYFMFYVFMiLAFLVKMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLG 227
Cdd:MTH00110  161 LVALLYIQNNLGSLNFLLlqlwaqpLPNSWSNNLLWLACM-MAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLG 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 228 GYGIFRVMKVISLMGLKFNYFWLSLGLSGGVIVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGH 307
Cdd:MTH00110  240 GYGMMRITIILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAH 319
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 308 GLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMSLWWFLLSSSNMAAPPSLNLVGELSLLNSIMSWSSFSYITLIFL 387
Cdd:MTH00110  320 GLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIMSSFSWSNITIILMGLN 399
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|
gi 1494235701 388 SFFSAVYTLYMYSYSQHGSYYSGVYTCSLGYFREYHLLFLHWLPLNILCL 437
Cdd:MTH00110  400 MLITALYSLYMLITTQRGKLTHHINNIKPSFTRENTLMALHLLPLLLLSL 449
ND4 MTH00206
NADH dehydrogenase subunit 4; Provisional
5-432 9.91e-99

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214458 [Multi-domain]  Cd Length: 450  Bit Score: 303.01  E-value: 9.91e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701   5 LFMIIFLTPLCLLKNIWWLVHSLMFLSSFIFMICVYFCSDLSMIS--YFFGVDYFSFSLIFLSFWICSLMITASGSIYLS 82
Cdd:MTH00206    6 LIMLLLMTILSKKKWLWRSTTFFSFLIALLFLLWFKWSSEVGWSFsnLYLSYDPLSSPLVILSCWLLPLMFLASQNHMKN 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701  83 SYHSN--LFIFMVLFLMIMLYCSFSSLSLLSFYIFFESSLVPTLLLILGWGYQPERLQAGIYLIFYTLFASLPLLLVLFK 160
Cdd:MTH00206   86 EPINRqrIYITLLIVLQLFLILFFSSSNLLLFYILFEASLIPTLLLITRWGNQKERLNAGYYFLFYTLIGSLPLLIALLF 165
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 161 VYDYVNTLYFPLLID---FGSYYFMFYVFMILAFLVKMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKV 237
Cdd:MTH00206  166 LQNSLGSLSLYILYFsklTTWNNNLWWLACILAFLVKLPLYGVHLWLPKAHVEAPVAGSMVLAGVLLKLGGYGMMRIILI 245
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 238 ISLMGLKFNYFWLSLGLSGGVIVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCL 317
Cdd:MTH00206  246 LGPSTKLSSYFFIILGLWGSIMTSSICLRQTDLKSLIAYSSVSHMSLVTAGILSGSPWGFKGALLLMIAHGLVSSALFCL 325
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 318 SNIIYERLGSRSLLINKGMINLMPSMSLWWFLLSSSNMAAPPSLNLVGELSLLNSIMSWSSFSYITLIFLSFFSAVYTLY 397
Cdd:MTH00206  326 ANLLYERSHTRTILGNRGLQMILPLLSFWWLLFFLANLGLPPFPNLFGELLIITSLFSWSNFTLPLLGLGFLFTAIYSLY 405
                         410       420       430
                  ....*....|....*....|....*....|....*
gi 1494235701 398 MYSYSQHGSYYSGVYTCSLGYFREYHLLFLHWLPL 432
Cdd:MTH00206  406 MFVMTQHGKTPNHLLSLSPSSTREHLLLFLHLFPV 440
ND4 MTH00127
NADH dehydrogenase subunit 4; Provisional
1-438 6.45e-86

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177186 [Multi-domain]  Cd Length: 459  Bit Score: 270.29  E-value: 6.45e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701   1 MLKYLFMIIFLTPLCLLKNIWWL-----VHSLMFLSSFIFMICVYFCSDLSMISYFFGVDYFSFSLIFLSFWICSLMITA 75
Cdd:MTH00127    1 MLKILIPTLMLIPTTWLTPAKWLwtttlAHSLLIALASLTWLKNLSETGWSSLNLYMATDPLSTPLLVLTCWLLPLMILA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701  76 SGSIYLSSYHSN--LFIFMVLFLMIMLYCSFSSLSLLSFYIFFESSLVPTLLLILGWGYQPERLQAGIYLIFYTLFASLP 153
Cdd:MTH00127   81 SQNHTAPEPINRqrMYITLLTSLQIFLILAFGATEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLP 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 154 LLLVLFKVYDYVNTL------YFPLLIDFGSYYFMFYVFMILAFLVKMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLG 227
Cdd:MTH00127  161 LLVALLLLQNSTGTLsmltlqYSQPLQLSSWADKLWWAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLG 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 228 GYGIFRVMKVISLMGLKFNYFWLSLGLSGGVIVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGH 307
Cdd:MTH00127  241 GYGMMRMMVMLDPLTKELSYPFIILALWGIIMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGFTGALILMIAH 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 308 GLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMSLWWFLLSSSNMAAPPSLNLVGELSLLNSIMSWSSFSYITLIFL 387
Cdd:MTH00127  321 GLTSSALFCLANTNYERTHSRTMLLARGLQMILPLMATWWFIASLANLALPPLPNLMGELMIITSLFNWSPWTLALTGLG 400
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1494235701 388 SFFSAVYTLYMYSYSQHGSYYSGVYTCSLGYFREYHLLFLHWLPLNILCLK 438
Cdd:MTH00127  401 TLITAGYSLYMFLMTQRGPLPDHIIALNPSHTREHLLMALHLLPLLLLILK 451
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
48-399 1.31e-55

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 191.83  E-value: 1.31e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701  48 ISYFFGVDYFSFSLIFLSFWICSLMITASGSIylSSYHSNLFIFMVLFLMIMLYCSFSSLSLLSFYIFFESSLVPTLLLI 127
Cdd:COG1008    74 ISYHLGVDGISLPLVLLTALLTPLAILASWNE--IKKRPKLYYALLLLLEAGMIGVFLALDLFLFYVFWELMLIPMYFLI 151
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 128 LGWGYqPERLQAGIYLIFYTLFASLPLLLVLFKVYDYVNTLYFPLL------IDFGSYYFMFYVFMIlAFLVKMPMFLFH 201
Cdd:COG1008   152 GIWGG-ERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALTFDIAelaaapLPLTAQLLLFLAFFI-AFAVKVPMFPFH 229
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 202 LWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVmkVISLM---GLKFNYFWLSLGLSGGVIVSFICFRQVDLKSLIAYSS 278
Cdd:COG1008   230 TWLPDAHVEAPTAGSVLLAGVLLKMGGYGLLRF--ALPLFpeaSAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSS 307
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 279 VAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMSLWWFLLSSSNMAAP 358
Cdd:COG1008   308 VSHMGFVLLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLP 387
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|...
gi 1494235701 359 PSLNLVGELSLLNSimSWSSFSYITLIFLS--FFSAVYTLYMY 399
Cdd:COG1008   388 GTSGFVGEFLVLLG--AFQVNPWLAILAALglILTAAYLLWMY 428
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
113-388 2.41e-55

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 185.59  E-value: 2.41e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 113 YIFFESSLVPTLLLILGWGYQPERLQAGIYLIFYTLFASLPLLLVLFKVYDYVNTLYFPLLIDF------GSYYFMFYVF 186
Cdd:pfam00361   8 YLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKAltgglnSSGLLLLFLL 87
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 187 MILAFLVKMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISLMGLKFNYFWLSLGLSGGVIVSFICFR 266
Cdd:pfam00361  88 ILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLLGSLAALV 167
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 267 QVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLS-NIIYERLGSRSLLINKGMINLMPSMSL 345
Cdd:pfam00361 168 QTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAKTMPILAL 247
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 1494235701 346 WWFLLSSSNMAAPPSLNLVGELSLLNSIMSWSSFSYITLIFLS 388
Cdd:pfam00361 248 VFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVG 290
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
89-399 1.78e-51

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 180.64  E-value: 1.78e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701  89 FIFMVLFLMIMLYCSFSSLSLLSFYIFFESSLVPTLLLILGWGYQPERLQAGIYLIFYTLFASLPLLLVLFKVYDYVNTL 168
Cdd:MTH00204  114 FLLCLLFLEVLLIGVFSVLDLLLFYILFEGILIPMFLLIGIWGSREEKVRASYYFFFYTFAGSVFMLLGIFQLYSITGTT 193
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 169 -YFPLLIDFGSYYFMFYVFM--ILAFLVKMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVI-SLMGLK 244
Cdd:MTH00204  194 dYQILLNIKLPLSIQKWLLVgfFLSLAVKIPQIPFHIWLPQAHVEAPVAGSVILAGILLKLGGYGFLRFSWPLfPAASEY 273
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 245 FNYFWLSLGLSGGVIVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYER 324
Cdd:MTH00204  274 FAPLIVMLSVIAVIYGSLTTCRQVDFKRLIAYSSVAHMGLVPLGLFTHTIEGLVAAVFLMLAHGFVSSALFIAVTFLYER 353
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1494235701 325 LGSRSLLINKGMINLMPSMSLWWFLLSSSNMAAPPSLNLVGELSLLNSIMSWSSFSYITLIFLSFFSAVYTLYMY 399
Cdd:MTH00204  354 HHTRLIKYYRGLTLTMPLFVIIMLVLSLANMGFPLSCNFVGEFFSLLAAFEYSLGLGVLVTSGMVWSAAYSLYLY 428
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
89-399 2.04e-50

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 177.55  E-value: 2.04e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701  89 FIFMVLFLMIMLYCSFSSLSLLSFYIFFESSLVPTLLLILGWGYQPERLQAGIYLIFYTLFASLPLLLVLFKVYDYVNTL 168
Cdd:MTH00217  111 FLLCLLVIEILLMGVFTILDLVGFYILFEGILIPMFLIIGIWGSREEKVQASYYFFFYTFIGSVFMLLGIFTLYSYAGTT 190
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 169 YFPLL----IDFGSYYFMFYVFMiLAFLVKMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRV-MKVISLMGL 243
Cdd:MTH00217  191 DYQALcclkIEKELQYFIFLGFF-LSLAIKIPKIPFHIWLPQAHVEAPVAGSVILAGVLLKLGGYGFIRFsWPLLPEASE 269
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 244 KFNYFWLSLGLSGGVIVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYE 323
Cdd:MTH00217  270 YFSPLIQTLSLLAIIYGSLTTCRQVDLKRIIAYSSVAHMGLVTLGIFSHTIQGLVAAIFLMLAHGLVSSALFIAVTFLYE 349
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1494235701 324 RLGSRSLLINKGMINLMPSMSLWWFLLSSSNMAAPPSLNLVGELSllnSIMSWSSFSYITLIFLSF---FSAVYTLYMY 399
Cdd:MTH00217  350 RHHTRLIKYYRGMVITMPLFGILMLLLVLANASIPLSCNFVGEFL---SLLAAFEYSYIVGVLASLgmvLSAGYSIYLY 425
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
48-399 2.71e-48

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 172.31  E-value: 2.71e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701  48 ISYFFGVDYFSFSLIFLSFWICSLMITASGSI---YLSSYHSNLFifMVLFLMIMLYCSFSSLSLlsfYIFFESSLVPTL 124
Cdd:PRK05846   74 ISYHLGVDGISLLLVVLTALLTPLAVLASWEEikkRVKFYMAALL--WLEGGVIGVFAALDLLLF---YVFFEAMLIPMY 148
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 125 LLILGWGYqPERLQAGIYLIFYTLFASLPLLLVLFKVYDYV-----NTLYFPLL---IDFGSYYFMFYVFMIlAFLVKMP 196
Cdd:PRK05846  149 FLIGVWGG-KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVYynatgTFDIADLLnlpLPPGVQYWLFLAFFI-AFAVKMP 226
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 197 MFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVI-SLMGLKFNYFWLSLGLSGGVIVSFICFRQVDLKSLIA 275
Cdd:PRK05846  227 MFPLHTWLPDAHVQAPTAGSVLLAGILLKMGAYGLLRFSLPLfPDASHEFAPIIITLGVIAIIYGALVALAQTDIKKLIA 306
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 276 YSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMSLWWFLLSSSNM 355
Cdd:PRK05846  307 YSSISHMGFVTLGIFAGNQLGIQGAIFQMISHGLSSAALFLLVGVLYDRLHTRDIADYGGLAKVMPVLAAFFLFFAMASL 386
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*.
gi 1494235701 356 AAPPSLNLVGELSLLnsIMSWSSFSYITLI--FLSFFSAVYTLYMY 399
Cdd:PRK05846  387 GLPGTSGFVGEFLIL--LGSFQVNPVIAFIatTGLILAAVYSLWLY 430
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
48-399 1.62e-47

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 169.74  E-value: 1.62e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701  48 ISYFFGVDYFSFSLIFLSFWICSLMITASGsiYLSSYHSNLFIFMVLFLMIMLYCSFSSLSLLSFYIFFESSLVPTLLLI 127
Cdd:TIGR01972  69 ISYHLGVDGISLLLVLLTALLTLLAILASW--ESIQKRVKEFYALLLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLLI 146
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 128 LGWGyQPERLQAGIYLIFYTLFASLPLLL-VLFKVYDYVNTLYFPLLID----FGSYYFMFYVFMIlAFLVKMPMFLFHL 202
Cdd:TIGR01972 147 GVWG-GPNRIYAAMKFFLYTLAGSLLMLLaILGLYFLGGGTFDLLELLNlplpFGVQTWLFLAFFI-AFAVKVPLFPLHT 224
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 203 WLPKAHVEAPISGSMILAGVLLKLGGYGIFRV-MKVISLMGLKFNYFWLSLGLSGGVIVSFICFRQVDLKSLIAYSSVAH 281
Cdd:TIGR01972 225 WLPDAHVEAPTAGSVILAGVLLKMGTYGFLRFnLPLFPDASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISH 304
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 282 MSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMSLWWFLLSSSNMAAPPSL 361
Cdd:TIGR01972 305 MGFVLLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTS 384
                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 1494235701 362 NLVGELSLLNSIMSWSSFSYITLIFLSFFSAVYTLYMY 399
Cdd:TIGR01972 385 GFVGEFLILLGSFKVNPVVAFLAALGIVLAAAYMLTLY 422
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
52-397 1.68e-47

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 170.49  E-value: 1.68e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701  52 FGVDYFSFSLIFLSFWI--CSLMITASGSIYLSSYhsnlFIFMVLFLMIMLYCSFSSLSLLSFYIFFESSLVPTLLLILG 129
Cdd:MTH00226   98 FAVDGISIYFIILTGFIvpCSILISWHSVKYLTKS----FLICMLILEFLLYAVFSVLDIFMFYILFEGVLIPMYLILGI 173
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 130 WGYQPERLQAGIYLIFYTLFASLPLLLVLFKVYDYVNTLYFPLLIDF-----GSYYFMFYVFMILAFLVKMPMFLFHLWL 204
Cdd:MTH00226  174 WGSREEKMQAAYYFFFYTLIGSVLMLLCLFSLYNIHGTTDYLTLASCshvvsEQTQKWIFLGIFLAMAVKIPIFPFHIWL 253
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 205 PKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISLMGLK-FNYFWLSLGLSGGVIVSFICFRQVDLKSLIAYSSVAHMS 283
Cdd:MTH00226  254 PKAHVEAPVAGSVLLAGILLKLGGYGLVRLSWPILPLGAQnLAPAVIAMGIVGIVYGSFATCRQIDVKRLVAYSSVAHMG 333
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 284 MVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMSLWWFLLSSSNMAAPPSLNL 363
Cdd:MTH00226  334 LVSITLVTHDIIGLTGSIFIMLAHGIVSSLLFILVTILYDRHHTRLIKYYRGLSITMPIWGTIMIVTSLANVAVPPSGNF 413
                         330       340       350
                  ....*....|....*....|....*....|....
gi 1494235701 364 VGELSLLNSIMSWSSFSYITLIFLSFFSAVYTLY 397
Cdd:MTH00226  414 IGEYLSILSSFNWNPIIGVFVCSGVILSAVYSFY 447
ND4 MTH00094
NADH dehydrogenase subunit 4; Provisional
26-419 2.52e-42

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177157 [Multi-domain]  Cd Length: 403  Bit Score: 154.29  E-value: 2.52e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701  26 SLMFLSSFIFMICVYFCSDLSMISYFFGVDYFSFSLIFLsfwicsLMITASGSIYLSSYHSNLFIFMVLFLMIMLyCSFS 105
Cdd:MTH00094    8 SPFLFFLFLMFFSFLMFNNYSWSGLFFFFDSFVFVLLIF------MMVFILGLVLLSEKNFNLLILSNLLILICL-LFFV 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 106 SLSLLSFYIFFESSLVPTLLLILGWGYQPERLQAGIYLIFYTLFASLPLLLVLFKVYDYVNTLYFPLLIDfgsyyFMFYV 185
Cdd:MTH00094   81 SSNMLMLYMFFELSMFPILIMILGYGSQIEKINSSYYLLFYAAFFSFPFLFVYLKNFFFFSLCYFDFFLS-----WEMFF 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 186 FMILAFLVKMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKvisLMGLKFNYFWLSLGLSGGVIVSFICF 265
Cdd:MTH00094  156 ILSLSFMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGFLRILG---SLNFVYNNFWIIFSLLGMILSSFCCV 232
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 266 RQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMSL 345
Cdd:MTH00094  233 FQSDSKSLAAYSSVTHMSFLLLSLVYMSMSGKLSGLMMMLAHGYTSTLMFYLIGEFYHISKSRLIYFMNSFFSSSMFFGL 312
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1494235701 346 WWFLLSSSNMAAPPSLNLVGELSLLNSIMSWSSFSYITLIFLSFFSAVYTLYMYSYSQHGSYYSGVYTCSLGYF 419
Cdd:MTH00094  313 IFSLVFLSNSGVPPSLSFFSEFLIISNSFMKNKFSFFFIFFYFLVSFYYSLFLIVSSFMGKKFSNFNNFNVGLS 386
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
53-393 3.00e-33

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 130.92  E-value: 3.00e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701  53 GVDYFSFSLIFLSFWICSLMITASGSIylsSYHSNLFifmvLFLMIMLYCSFSSLS----LLSFYIFFESSLVPTLLLIL 128
Cdd:PRK12561   56 GVDGLSMPLVLLSGLITTLSIFASWKV---TRKPRLF----YFLMLVLYSAQIGVFlaqdLLLFFLMWELELVPVYLLIS 128
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 129 GWGYQpERLQAGIYLIFYTLFASLPLLLVLFKVYDYVNTLYFPL----LIDF-GSYYFMFYVFMILAFLVKMPMFLFHLW 203
Cdd:PRK12561  129 IWGGQ-KRLYAATKFILYTALASIFILVAGLALALSGDTFTFDLaelgAKSYpLALELLLYAGFLIAFGVKLPIFPLHTW 207
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 204 LPKAHVEAPISGSMILAGVLLKLGGYGIFRV-MKVISLMGLKFNYFWLSLGLSGGVIVSFICFRQVDLKSLIAYSSVAHM 282
Cdd:PRK12561  208 LPDAHGEASAPVSMILAGVLLKMGGYALIRFnVQMLPDAHVYFAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHM 287
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 283 SMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMSLWWFLLSSSNMAAPPSLN 362
Cdd:PRK12561  288 GFVLLGIAAFTDLGISGAMLQMISHGLIAAALFFLTGVTYERTHTLSIPNMGGLAKVMPKTFALFTASSMASLALPGMSG 367
                         330       340       350
                  ....*....|....*....|....*....|.
gi 1494235701 363 LVGELSLLNSIMSWSSFSYITLIFLSFFSAV 393
Cdd:PRK12561  368 FVSELTVFLGITSSDVYSSTFRTITILLAAV 398
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
52-403 2.14e-28

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 116.01  E-value: 2.14e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701  52 FGVDYFSFSLIFLSFWICSLMITASGSIYLSSYHSNLFIFMVLFLMIMLYCSFSSLSLLSFYIFFESSLVPTLLLILGWG 131
Cdd:COG0651    72 LVADRLSALFLLLTALVALAVLLYSIGYMRHERRGRRFYPLFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGG 151
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 132 YqPERLQAGIYLIFYTLFASLPLLLVLFKVYDYVNTLYFPLLIDFGSYY-----FMFYVFMILAFLVKMPMFLFHLWLPK 206
Cdd:COG0651   152 T-KEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAARLAELdpgllLAAFALLLVGFGIKAALFPLHFWLPD 230
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 207 AHVEAPISGSMILAGVLLKLGGYGIFRVMKVI--SLMGLKFNYFWLSLGLSGGVIVSFICFRQVDLKSLIAYSSVAHMSM 284
Cdd:COG0651   231 AYPAAPSPVSALLSGLLTKVGVYAILRVLTLLfgADPALFLGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGY 310
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 285 VIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMSLWWFLLSSSNMAAPPSLNLV 364
Cdd:COG0651   311 ILLGLGLGTPLGLAGALFHLLNHALAKALLFLAAGAIERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFV 390
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 1494235701 365 GELSLLNSIMSWSSFSYITLIFL-SFFSAVYTLYMYSYSQ 403
Cdd:COG0651   391 SKWLLLQAALEAGAWLLAAVLLLsSLLTLAYFVRIFGRAQ 430
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
53-393 2.97e-26

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 110.95  E-value: 2.97e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701  53 GVDYFSFSLIFLSFWICSLMITASGSIylsSYHSNLFIFMVLFLMIMLYCSFSSLSLLSFYIFFESSLVPTLLLILGWGY 132
Cdd:PRK02546   84 GADGLSMPLILLTGFITTLAVLAAWPV---TFKPKLFYFLMLAMYGGQIAVFAVQDMLLFFLAWELELIPVYLLLAIWGG 160
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 133 QpERLQAGIYLIFYTLFASLPLLLVLFKVYDYVNTLYFPLLI----DFG-SYYFMFYVFMILAFLVKMPMFLFHLWLPKA 207
Cdd:PRK02546  161 K-KRQYAATKFILYTAGSSLFILLAALAMAFYGDTPTFDMTAlaakDFGlGFQLLCYAGLLIAYGVKLPIVPLHTWLPDA 239
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 208 HVEAPISGSMILAGVLLKLGGYGIFRV-MKVISLMGLKFNYFWLSLGLSGGVIVSFICFRQVDLKSLIAYSSVAHMSMVI 286
Cdd:PRK02546  240 HGEATAPVHMLLAGILLKMGGYALLRMnAGMLPDAHAQFAPLLIVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVL 319
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 287 GGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMSLWWFLLSSSNMAAPPSLNLVGE 366
Cdd:PRK02546  320 IGIGSFTDLGTSGAMLQMISHGLIGASLFFLVGATYDRTHTLMLDEMGGVGQKMRKMFAMWTACSLASLALPGMSGFVAE 399
                         330       340
                  ....*....|....*....|....*..
gi 1494235701 367 LSLLNSIMSWSSFSYITLIFLSFFSAV 393
Cdd:PRK02546  400 LMVFVGFATSDAYTLPFRVVVVFLAAV 426
ndhD CHL00011
NADH dehydrogenase subunit 4
52-393 1.40e-24

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 105.80  E-value: 1.40e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701  52 FGVDYFSFSLIFLSFWICSLMITASGSIylsSYHSNLFifmvLFLMIMLYC----SFSSLSLLSFYIFFESSLVPTLLLI 127
Cdd:CHL00011   80 LGIDGLSIGPILLTGFITTLATLAAWPV---TRNSRLF----YFLMLAMYSgqigLFSSRDLLLFFIMWELELIPVYLLL 152
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 128 LGWGYQpERLQAGIYLIFYTLFASLPLLLVLFKVYDYVN---TLYFPLLIDfGSYYF----MFYVFMILAFLVKMPMFLF 200
Cdd:CHL00011  153 SMWGGK-KRLYSATKFILYTAGGSIFLLIGVLGMGLYGSnepTLNFETLAN-QSYPValeiLFYIGFLIAYAVKLPIIPL 230
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 201 HLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRV-MKVISLMGLKFNYFWLSLGLSGGVIVSFICFRQVDLKSLIAYSSV 279
Cdd:CHL00011  231 HTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRInMELLPHAHSIFSPWLVIVGAIQIIYAASTSLGQRNLKKRIAYSSV 310
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 280 AHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMSLWWFLLSSSNMAAPP 359
Cdd:CHL00011  311 SHMGFIIIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGIAIPMPKIFTMFSSFSMASLALPG 390
                         330       340       350
                  ....*....|....*....|....*....|....
gi 1494235701 360 SLNLVGELSLLNSIMSWSSFSYITLIFLSFFSAV 393
Cdd:CHL00011  391 MSGFVAELIVFFGIITSQKYLLMPKILITFVMAI 424
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
48-338 2.44e-23

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 102.09  E-value: 2.44e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701  48 ISYFFGVDYFSFSLIFLSFWICSLMITASGSiylSSYHSNLFIFMVLFLMIMLYCSFSSLSLLSFYIFFESSLVPTLLLI 127
Cdd:PRK06473   71 LSYHLGVDGLSLPLLVLNSLLTLIAIYSSDE---SIQRPRFYYSLLLLLNAGVSGAFLAQDLLLFFLFYELELIPLYLLI 147
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 128 LGWGYQpERLQAGIYLIFYTLFASLPLL---LVLFKVYDYVNTLYFPLLIDF--GSYYFMFYVFMILAFLVKMPMFLFHL 202
Cdd:PRK06473  148 AIWGGQ-RRGYAATKFLLYTAISGILILvsfLGLVWLSGASSFDYEPLRSHTlpLSTQLLLLAPILVGFGIKIPLVPFHT 226
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 203 WLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISLMGLKFNYFWLSLGLSGGVIVSFIC-FRQVDLKSLIAYSSVAH 281
Cdd:PRK06473  227 WLPDAHVEASTPVSVLLAGVLLKLGTYGLLRFGVGLFPEAWVYLAPWLATWAVVSVLYGASCaIAQKDMKKMVAYSSIGH 306
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1494235701 282 MSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMIN 338
Cdd:PRK06473  307 MGYILLAAAAATPLSILAAVFQMISHGLISALLFLLVGVVYKKTGSRDVDVLRGLLN 363
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
48-365 1.23e-19

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 90.93  E-value: 1.23e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701  48 ISYFFGVDYFSFSLIFLSfwiCSLMITASGSIYLSSYHSNLFIFMVLFLMIMLYCSFSSLSLLSFYIFFESSLVPTLLLI 127
Cdd:PRK07363   71 LSYSLGVDGLSLPLLVLN---SLLTWIAIYSIGENTERPRLYYSLILLINGGIAGALLAQNLLLFFLFYELELIPFYLLI 147
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 128 LGWGYQpERLQAGIYLIFYTLFASLPLLLVLFKV----------YDYVNTLYFPLlidfgSYYFMFYVFMILAFLVKMPM 197
Cdd:PRK07363  148 AIWGGE-KRGYASIKFLIYTAVSGLLVLAAFLGIvwlsgstsfdYDAISTQNLSL-----NTQLILLTGLLLGFGIKIPL 221
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 198 FLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMkvISLMGLKFNYFWLSLGLSGGVIV---SFICFRQVDLKSLI 274
Cdd:PRK07363  222 VPLHTWLPDAYTEASPAVAILLGGVLAKLGTYGLLRFG--LQLFPQTWSLVAPGLAIIGTISViygALSAIAQKDIKRMV 299
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 275 AYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMSLWWFLLSSSN 354
Cdd:PRK07363  300 AYSSIGHMGYILVAAAAGTQLSLLGAVAQMISHGLILALLFHLVGIVERKVGTRDLDVLNGLMNPIRGLPLTSALLVLAG 379
                         330
                  ....*....|.
gi 1494235701 355 MAAPPSLNLVG 365
Cdd:PRK07363  380 MASAGIPGLVG 390
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
52-401 3.49e-19

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 89.55  E-value: 3.49e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701  52 FGVDYFSFSLIFLSFWICSLMITASgsIYLSSYHSNLFIFMVLFLMIMLYCSFSSLSLLSFYIFFESSLVPTLLLIlGWG 131
Cdd:PRK08375   73 LRADSLSALFLLVTSILAIAALLYA--IGYGEHRQTRFYALFLLLLAGLLGALLTADLFNLFVFLEIMSLSSYALV-AMG 149
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 132 YQPERLQAGIYLIFYTLFASLPLLLVLFKVYDYVNTLYFPLL---IDFGSYYFMFYVFMILAFLVKMPMFLFHLWLPKAH 208
Cdd:PRK08375  150 GDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLagaLAENPTVVTAFGFVLLALALKAAVFPLHTWLPRAY 229
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 209 VEAPISGSMILAGVLLKLGGYGIFRVMKVISLMGLKFNYFWLS----LGLSGGVIVSFICFRQVDLKSLIAYSSVAHMSM 284
Cdd:PRK08375  230 PAAPPVVTALLSGLVTKVAVYALIRIYFTVFGGDFRFALGLGWllavLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGY 309
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 285 VIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMSLWWFLLSSSNMAAPPSLNLV 364
Cdd:PRK08375  310 ILLGLALLTPLALAAGLLHLLHHALMKGALFLAAGAIEVTYGTRRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFV 389
                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 1494235701 365 GELSLLNSIMSWSSFSYITLIFL-SFFSAVYTLYMYSY 401
Cdd:PRK08375  390 SKWYLVVGAVEAGQWLVLAVLLAsSLLALLYFLRIWYR 427
ND4 MTH00062
NADH dehydrogenase subunit 4; Provisional
22-419 1.91e-18

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214413 [Multi-domain]  Cd Length: 417  Bit Score: 86.90  E-value: 1.91e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701  22 WLVHSLMFLSSFIFMICVYFCSDLSMISYFFGV---DYFSFSLIFLSFWICSLMITASGSIYLSSYHSNLFIFMVLFLMI 98
Cdd:MTH00062    3 FFSVGFFLGFLLLLLFCLLYSSGVGCCILVVNNvfnGLFIFDSLSFYLILLVLFLGLYSQVMFYNLLSGVSRFFLFLSLI 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701  99 MLYCSFSSLSLLSFYIFFESSLVPTLLLILGWGYQPERLQAGIYLIFYTLFASLPLLLVLFKVYDYVNTLYFPLLIDFGS 178
Cdd:MTH00062   83 FSILCFCVNNSLLFWFFYELSIIPLLYLLFSESPYSERYLASWYFLGYLLLTSLPLLLCLLYLSLVNGSFNFSDWGSDDS 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 179 YYFMFYVFMILAFLVKMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVIsLMGLKFNYFWLSLGLSGGV 258
Cdd:MTH00062  163 VSLIVYYVLSFMFITKVPLFPFHTWLPIVHAEASSPVSIFLSGYIMKLGLLGVYRFCGFI-FSGSFLGYLFLCCLFSVFF 241
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 259 IVSfiCFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMIN 338
Cdd:MTH00062  242 LIT--ACSELDGKRWLAFLSLSHILVPVLGLFVGDWSSINLSFFYCLGHGLSAGLVFLLLWCFYEVSGSRNWVLLKSGIN 319
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 339 LMPSMSLWWFLLSSSNMAAPPSLNLVGELSLLNSIMSWSSFSYITLIFLSFFSAVYTLYMYSYSQHGSYYSGVYTCSLGY 418
Cdd:MTH00062  320 GSLVLRVIVVFSFLSLCSFPPTIQFFCEVFLVSSSFGVLVYLLFWCFYLFFGGLVPLILLGHLLIRSESYESINVSNYSY 399

                  .
gi 1494235701 419 F 419
Cdd:MTH00062  400 L 400
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
144-398 3.24e-17

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 83.87  E-value: 3.24e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 144 IFYTLFASLPLLLVLFKVYDYVNTLYFPLLIDFGSYYFMFYVFMILAFLVKMPMFLFHLWLPKAHVEAPISGSMILAGVL 223
Cdd:PRK12667  186 FLYATFGTLNMADLSAKIRGLSFPLTGGLAGNPPLALGVALALALWAFTIKAAIFPNHFWLPDAHPAAPSPVSAMLSGLV 265
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 224 LKLGGYGIFRVMKVISLMGLKFNYFW-------LSLGLSGGVIVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWG 296
Cdd:PRK12667  266 VNVGAYAIIRFLYTIFGISPSLIDFRaalspilIILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLG 345
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 297 CMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMSLWWFLLSSSNMAAPPSLNLVGELSLLNSIMSW 376
Cdd:PRK12667  346 LAAALFHIINHAIAKSLLFLASGVFIHAAGTRDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLES 425
                         250       260
                  ....*....|....*....|..
gi 1494235701 377 SsfSYITLIFLSFFSAVYTLYM 398
Cdd:PRK12667  426 G--FYLPALVLLIASAISLVGY 445
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
184-375 3.49e-15

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 77.28  E-value: 3.49e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 184 YVFMILAFLVKMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVI--SLMGLKFNYFWLSLGLSGGVIVS 261
Cdd:PRK06458  217 FVFLLIGFGTKVGLFPMHAWLPDAHSEAPSPVSALLSGVLLNVALYAVLRYYILIdaAIGSDFPGRLLLIFGLLSVLVAA 296
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 262 FICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMP 341
Cdd:PRK06458  297 FFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLNHSLTKSAIFFASGNVLQKYGTRDINVIRGLLKVSP 376
                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1494235701 342 SMSlWWFLLSSSNMA-APPSLNLVGELSLLNSIMS 375
Cdd:PRK06458  377 LTG-WGLMLGALAIAgMPPFGVFISEFLILTAGLA 410
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
113-341 2.04e-13

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 72.34  E-value: 2.04e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 113 YIFFESSLVPTLLLILgWGYQPERLQAGIYLIFYTLFASLpLLLVLFKVYDYVNTLYFPLLIDF------GSYYFMFYVF 186
Cdd:PRK08668  124 YIFWEIMTFSSFMMVP-MGKKESRKASLKYFVLSAIGAYA-MLYAIFLIYAKTGTFDFADISQGlindtsTGFALIVFLF 201
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 187 MILAFLVKMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISLMGL-----------KFNYFWLSLGLS 255
Cdd:PRK08668  202 LLAFGVAKAGIFPLHVWAPDAYSEAPQSFSAVLSGQLSKLGAYGFLLVLYVLPGTKLfsefgtyrgvpLFNYILAWLGNI 281
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 256 GGVIVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKG 335
Cdd:PRK08668  282 SIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAGGLFHVFNHALFKGLFFLIFAAVIYRTGTTKISEMGG 361

                  ....*.
gi 1494235701 336 MINLMP 341
Cdd:PRK08668  362 LIEKMP 367
PRK12646 PRK12646
DUF4040 family protein;
80-398 2.10e-13

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 72.48  E-value: 2.10e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701  80 YLSSYHSNL---FIFMVLFLMIMLyCSFSSLSLLSFYIFFESSLVPTLLLILGWGYQPERLQAGIYLIFYTLFASLPLLL 156
Cdd:PRK12646  101 YLSSRKDNLprfYFYLTLFMFSMI-GIVLSDNTILMYVFWELTSVSSFLLISYWYNNGDSQFGAIQSFMITVFGGLALLV 179
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 157 VLFKVYDYVNTLYFPLLID-----FGSYYFMFYVFMIL--AFlVKMPMFLFHLWLPKAhVEAPISGSMIL-AGVLLKLGG 228
Cdd:PRK12646  180 GFIMLYIMTGTNNITEILGqadhiKNHGLFIPMIFMFLlgAF-TKSAQFPFHIWLPRA-MAAPTPVSAYLhSATMVKAGI 257
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 229 YGIFRVMKVISLMGLkFNYFWLSLGLSGGVIVSFICFRQVDLKSLIAYSSVAH----MSMV-IGGLMTMNWWGCMGSLSL 303
Cdd:PRK12646  258 FLLFRFTPLLGLSNM-YIYIVTFVGLITMLFGSITALKQWDLKGILAYSTISQlgmiMAMVgIGGGYAQHQQDAIASIYV 336
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 304 MI---------GHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMSLwWFLLSSSNMAAPPSLN--LVGELSL--L 370
Cdd:PRK12646  337 FVlfaalfhlmNHAIFKCALFMGVGIIDHEAGTRDIRILSGMRQLFPKMNL-VMTIAALSMAGVPFLNgfLSKEMFLdaL 415
                         330       340       350
                  ....*....|....*....|....*....|....*
gi 1494235701 371 NSIMSWSSFSYITLIFL-------SFFSAVYTLYM 398
Cdd:PRK12646  416 TQTGQLSQFSLISMIIIvfigviaSIFTFTYALYM 450
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
20-372 5.25e-13

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 70.92  E-value: 5.25e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701  20 IWWLVHSLMFLSSFIFMICVYFCSDLSMISYFFGVDyFSFSLIFLSFWICSLM--ITASGSIYLSSY----HSN-----L 88
Cdd:PRK08667   35 LWLVIAIALLLFAGSLQLFTGNPLDIPLWGIAPGLD-ITFHIDRLAAFFIILIglVSLCVAIYSLGYnehmSSNeranlL 113
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701  89 FIFMVLFLMIMLYCSFSSLSLLSFyIFFESSLVPTLLLILGWGYQPERLQAGIYLIFYTLFASLPLLLVLFKVYDYVNTL 168
Cdd:PRK08667  114 SALTALFILSMLGVVASANTFSFL-FFWEIMALSSFFLVMNDYQEEETQRAGIFYFVMTQLSTVFLMLGIIVLFIQTGSF 192
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 169 YFPLLIDFGSYYFMFYVFMILAFLVKMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISLMGLKFNYF 248
Cdd:PRK08667  193 ELSPLGASAGILSLVFLLLFLGFGIKAGIIPFHKWLPYAHPASPSNVSALMSGVMLKVAVYGLVRFLMDVLSPELWWGVL 272
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 249 WLSLGLSGGVIVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLM-----------IGHGLCSSGLFCL 317
Cdd:PRK08667  273 ILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGIILMGIGLYVIFGVYGLDTLAllalggalfhsLNHALFKSLLFLT 352
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1494235701 318 SNIIYERLGSRSLLINKGMINLMPSMSLWWFLLSSSNMAAPPSLNLVGELSLLNS 372
Cdd:PRK08667  353 AGSVVHATGTRNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLYES 407
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
181-327 1.98e-11

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 65.55  E-value: 1.98e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 181 FMFYVFMILAFLVKMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVI--SLMGLKFNYFWLSLGLSGGV 258
Cdd:PRK08676  206 GASFLFIFIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLrqSGAAEQFSNVLIGLGIFSIA 285
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1494235701 259 IVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGS 327
Cdd:PRK08676  286 VAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLVKSGLFFSAGILHRQYRS 354
Oxidored_q5_N pfam01059
NADH-ubiquinone oxidoreductase chain 4, amino terminus;
1-102 5.77e-11

NADH-ubiquinone oxidoreductase chain 4, amino terminus;


Pssm-ID: 366442 [Multi-domain]  Cd Length: 110  Bit Score: 59.08  E-value: 5.77e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701   1 MLKYLFMIIFLTPLCLLKNIWWL-----VHSLMFLSSFIFMICVYFCSDLSMISYFFGVDYFSFSLIFLSFWICSLMITA 75
Cdd:pfam01059   1 MLKILLPTLMLIPLTFLSKPKWLwttstLYSLLLALLSLLLLNNPSNFSWSNLSYFLGIDSLSYPLIILSCWLLPLMILA 80
                          90       100
                  ....*....|....*....|....*....
gi 1494235701  76 SGSIYLSS--YHSNLFIFMVLFLMIMLYC 102
Cdd:pfam01059  81 SQKHLKSEpnNRQRTFIFLLILLQLFLIL 109
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
186-395 5.90e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 64.37  E-value: 5.90e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 186 FMILAFLVKMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVI-----SLMGLKFNYFWLSLGLSGGVIV 260
Cdd:PRK12662  214 FIMVGLFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLIIRIVYDVfkanfVFTTLPFNNVFMILAALAIVFG 293
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 261 SFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLM 340
Cdd:PRK12662  294 SVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVNHSIVKSALFMVSGSISYHFGTTKLEDCLNLWKSM 373
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1494235701 341 PSMSLWWFLLSSSNMAAPPSLNLVGELSLLNSIMSWSSF-SYITLIFLSFFSAVYT 395
Cdd:PRK12662  374 PKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIKSNAWiGLVVLLVGSGLSVIYV 429
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
188-345 1.13e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 59.97  E-value: 1.13e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 188 ILAFLVKMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISLMGLKFNYFWLSLGLSGgvivSFICFRQ 267
Cdd:PRK07234  191 ALGLLVKGGIFVSGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCALDVPGLDLIVRIFGVGTALLG----VLFALLE 266
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 268 VDLKSLIAYSSVAHMSMVIGGlmtmnwwGCMGSLsLMIGHGLCSSGLFCLSNIIYER----LGSRSLLINKGMINLMPSM 343
Cdd:PRK07234  267 KDLKRMLAFSTISQLGFILAA-------PLVGGL-YALAHGLVKSTLFLCAGALPSRnfteLISQMLGIGKWIPLTMASF 338

                  ..
gi 1494235701 344 SL 345
Cdd:PRK07234  339 SI 340
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
187-362 2.68e-08

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 56.05  E-value: 2.68e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 187 MILAFL---VKMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVmkVISLMG---LKFNYFWLSLGLSGGVIV 260
Cdd:PRK06521  213 FLLALFgfgAKAGLVPLHVWLPRAHPAAPSHVSALMSGVMLKVAIYGILRV--VFDLLGapgWWWGVLVLALGAISAVLG 290
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 261 SFICFRQVDLKSLIAYSSVAHMSMVIGGL-MTM----NWWGCMGSLSLM------IGHGLCSSGLFCLSNIIYERLGSRS 329
Cdd:PRK06521  291 VLYALAEHDLKRLLAYSTIENIGIIFVGLgLAMvfiaYGMPLLAALALTaalyhlLNHALFKSLLFLGAGAVLHATGTRD 370
                         170       180       190
                  ....*....|....*....|....*....|...
gi 1494235701 330 LLINKGMINLMPSMSlWWFLLSSSNMAAPPSLN 362
Cdd:PRK06521  371 MEKLGGLIRRMPWTA-WAFLIGCLAISALPPLN 402
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
113-365 6.84e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 54.59  E-value: 6.84e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 113 YIFFESSLVPTLLLiLGWGYQPERLQAGIYLIFYTLFASLPLLLVLFKVYDYVNTLYFPLL------IDFGSYYFMFYVF 186
Cdd:PRK12665  137 YVGFEILLVASYVL-LTLGATAARVRAGVTYVMVSMVSSLLFLIGIALVYAATGTLNMADLavrldeLPSGTRTALFAVL 215
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 187 MIlAFLVKMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVIsLMGLKFNYFWLSLGLSGGVIVSFICFR 266
Cdd:PRK12665  216 LV-AFGIKAAVFPLSFWLPDSYPTAPAPVTAVFAGLLTKVGVYAIIRTHTLL-FPGGGLDTLLMVVALLTMVVGILGAIA 293
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 267 QVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMSLW 346
Cdd:PRK12665  294 QSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYVAHHITVQTTLFLVVGLIERQAGSSSLRRLGGLAKASPLLAVL 373
                         250
                  ....*....|....*....
gi 1494235701 347 WFLlsssnmaapPSLNLVG 365
Cdd:PRK12665  374 FFV---------PALNLGG 383
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
113-362 1.18e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 53.95  E-value: 1.18e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 113 YIFFESSLVPTLLLILGWGYQPERLQAGI-YLIFYTLFASLPLLLV--LFKVYDYVNTLYFPLLIDFGSYYF--MFYVFM 187
Cdd:PRK08376  147 FVFLEIMSIASYALVAFRNDTWEAIEAGIkYMFVGSLASSMVLLGIalLYGQYGTLNMAYLAVKMSENPTVVakIALALF 226
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 188 ILAFLVKMPMFLFHLWLPKAHVEAPISGSMILagVLLKLGG-YGIFRVmkVISLMGLKFNYFWLslglsGGVIVSFICFR 266
Cdd:PRK08376  227 IAGLAMKSGAVPVHMWLPDAYPAAPSSISAML--LVIKQAGlYALARV--LFSIYGPAINLATV-----GWVIIILGCLT 297
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 267 ----------QVDLKSLIAYSSVAH---------MSMVIGGLMTMNWWGCM---GSLSLMIGHGLCSSGLFCLSNIIYER 324
Cdd:PRK08376  298 mfvgvamavvQKDVKRLLAYHSVSQigymllglgVGLAALGDPAMASYGEIalaGGIYHIVNHALYKALLFLTAGAVIYE 377
                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1494235701 325 LGSRSLLINKGMINLMPsMSLWWFLLSSSNMAAPPSLN 362
Cdd:PRK08376  378 TGTRNLNELGGLARTMP-KTTIAFLIGAAAIVGLPPFN 414
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
187-359 5.63e-07

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 51.69  E-value: 5.63e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 187 MILAFLVKMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISLMGLKFNYFWL--SLGLSGGVIVSFIC 264
Cdd:PRK08377  212 LIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARILYLMQNANGWSSVLKLviIMATLTVFFAELSA 291
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 265 FRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMS 344
Cdd:PRK08377  292 LRQKNVKRMIAYSSIGQVGMIALALALGTQAGVDAGVFHMINHAIVKALLFLAVGYVGITLGGTEIEKFEGLGKRMPLTA 371
                         170
                  ....*....|....*
gi 1494235701 345 LWWFLLSSSNMAAPP 359
Cdd:PRK08377  372 LALTIGALSTVGIPL 386
PRK12650 PRK12650
DUF4040 family protein;
185-374 1.82e-06

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 50.43  E-value: 1.82e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 185 VFMILAFLVKMPMFLFHLWLPKAHVEA-PIS-----GSMILAGVLLKLGGYGIFRVMKVislmglkFNYFWLSLGLSGGV 258
Cdd:PRK12650  212 VLIAVAAFTKSAQFPFHFWLPEAMAAItPVSaflhaAAVVKAGIYLLLRFSPVFHDVAV-------WNWLLIIVGMITAL 284
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 259 IVSFICFRQVDLKSLIAYSSVAHMsmviGGLMTMNWWGCMGSLSLMI----GHGLCSSGLFCLSNIIYERLGSRSLLINK 334
Cdd:PRK12650  285 MGAVFAVQKTDLKKLTAYSTVSQL----GWIVATIGVGTPFALTAAVvhtlAHALFKSSLFMLIGVVDHQAGTRDIRRLG 360
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1494235701 335 GMINLMPsMSLWWFLLSSSNMAA-PPSLNLVGELSLLNSIM 374
Cdd:PRK12650  361 SLWRRMP-FTFVSVTIAALSMAAvPPLFGFVSKEGMLTAFL 400
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
201-362 2.53e-06

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 49.83  E-value: 2.53e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 201 HLWLPKAHVEAPISGSMILAGVLLKLGGYGIFrvmkVISLMGLKFNYFWLSLGLSGGVIVSFI----CFRQVDLKSLIAY 276
Cdd:PRK08042  200 HGWVPQAHANASAPAAALFSTVVMKIGLLGIL----TLSLLGGNAPLWWGVALLVLGMITAFVgglyALMEHNIQRLLAY 275
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 277 SSVAHMSMVIGGL-----------MTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMSL 345
Cdd:PRK08042  276 HTLENIGIILLGLgagvtgialeqPALIALGLVGGLYHLLNHSLFKSVLFLGAGSVWFRTGHRDIEKLGGIGKKMPVISI 355
                         170
                  ....*....|....*..
gi 1494235701 346 wWFLLSSSNMAAPPSLN 362
Cdd:PRK08042  356 -AMLVGLMAMAALPPLN 371
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
59-396 1.03e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 47.50  E-value: 1.03e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701  59 FSLIFLSFWICSLMITASGSIYLSSYHSNLFIFMVLFLMIMLYCSFSSLSLLSFYIFFESSLVPTLLLIlGWGYQPERLQ 138
Cdd:PRK06589   88 FLLLIGFLWICALLYTPKYLAINNIDSSSRFLFFFNLTILIGVLIALSSDLFTMFVCYELLTISTAFLI-GHTRNNISLS 166
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 139 AGIYLIFYTLFASLPLLL-VLFKVYDYVNTLYFPLLIDFGSYYFMFYVFMILAFLVKMPMFLFHLWLPKAHVEAPISGSM 217
Cdd:PRK06589  167 GGYKYLKILMISALLLFLpAVILIYTKTGNLDFVSGGLFSKNQSIILLLMFIYGIAKTAIFPVHSWLPAAMVAHYPVSAL 246
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 218 ILAGVLLKLGGYGIFRVMKVI---SLMGLKFNYFWLSLGLSGGVIV--SFICFRQVDLKSLIAYSSVAHMSMVIGGLMTM 292
Cdd:PRK06589  247 LHAVIVVKTGLFCIYKILLYIfglSYLQRIFAEFNWLIFIPIVSIFysSLKALKTDNIKKILAYSTISQLSLALLSAFIL 326
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 293 NWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMSLWWFLLSSSNMAAPPSLNLVGELSLL-- 370
Cdd:PRK06589  327 TPKALGAAILHLVSHSFAKICLFYSMGSIYSLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILla 406
                         330       340
                  ....*....|....*....|....*....
gi 1494235701 371 ---NSIMSWSSFSYITLIFLSFFSAVYTL 396
Cdd:PRK06589  407 aseQNQPWLSIIVMLVVIASSILSALYLL 435
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
113-292 2.42e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 43.66  E-value: 2.42e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 113 YIFFESSLVPTLLLILGWGYQPERLQAGIYLIFYT------LFASLPLLLVLFKVYDYVNTLYFPLLIDFGSYYFMFYVF 186
Cdd:PRK12649  137 FIFWELTSITSFMLIGYWRHRPESVYGATKSLLITaggglfMFAGFLLLHVITGTYDIATILQDSELIENIKGHPLFLIT 216
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 187 MILAFL---VKMPMFLFHLWLPKAhVEAPISGSMIL-AGVLLKLGGYGIFRVMKVISlmGLKFNYFWLS-LGLSGGVIVS 261
Cdd:PRK12649  217 LILIFIgaaAKSAQGPFYIWLPNA-MEAPTPVSAFLhSATMVKAGVYLVARIHPIFS--GTEAWFILVSgTGMITMVLAG 293
                         170       180       190
                  ....*....|....*....|....*....|.
gi 1494235701 262 FICFRQVDLKSLIAYSSVAHMSMviggLMTM 292
Cdd:PRK12649  294 FLAFRQTDIKAILAYSTISQLAY----LMTM 320
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
185-315 7.07e-04

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 41.73  E-value: 7.07e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 185 VFMILAFLVKMPMFLFHLWLPKAHVEAPISGSMILAGVLlKLGGYGIF-RVMKVI--SLMGLKFNYFWLSLGLSGgVIVS 261
Cdd:PRK05777  208 VFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAP-KIAAFAVLlRLLVVAfgGLSEDWQQVLAIIAIASM-LVGN 285
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1494235701 262 FICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLF 315
Cdd:PRK05777  286 LAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAVLFYLLAYLFMTLGAF 339
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
113-396 1.62e-03

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 40.70  E-value: 1.62e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 113 YIFFESSLVPTLLLILgWGYQPERLQAGIYLIFYTLFASLPLLLVLFKVYDYVNTLYFPLL------IDFGSYYFMFYVF 186
Cdd:PRK12663  134 YVWFEVMLIASFVLIT-LGQEREQLRGAIKYVVLNLIGSWLFLLGIGLLYGTFGTLNMAHIamrlndMGDTATLTTIALL 212
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 187 MILAFLVKMPMFLFHlWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVIslmglkfnyFWLSLGLSGGVIV------ 260
Cdd:PRK12663  213 FLLAFGMKAALFPFM-WLPAAYHTPNTEVAALFAALLTKVGIYALIRVFTLL---------FPQERELLHPLLAtmaait 282
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 261 ----SFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGM 336
Cdd:PRK12663  283 mvigALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGINGAIFYLVHDMVVKTALFLIAGSLVRLTGYRSLQYLGGL 362
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 337 INLMPSMSLWWFLLSSSNMAAPPSLNLVGELSLLNSIMSWSSFSYITLIFLSFFSAVYTL 396
Cdd:PRK12663  363 YRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQGALDNGAYILLALMLITSLITMYSL 422
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
52-397 3.21e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 39.93  E-value: 3.21e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701  52 FGVDYFSFSLIFLSFWICSLMITASGSIYLSSYHSNLFIFMVLFLMIMLYCSFSSLSLLSFYIFFESSLVPTLLLILGWG 131
Cdd:PRK07691   73 FVADMFAALLVLTSSIITFLVILYSFQTIGIERERYYYYPSVLFMLAGVNGAFLTGDIFNLFVFFEVMLMASYVLIVIGG 152
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 132 YQPErLQAGIYLIFYTLFASLPLLLVLFKVYDYVNTLYFPLLI---------DFGSYYFMFYVFMILaFLVKMPMFLFHL 202
Cdd:PRK07691  153 TKIQ-LRESIKYVLINVVSSAFFVVAVAILYSVVGTLNMADISvkiaelsagQTGLITVVAILFLFV-FATKAGLFPLYF 230
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 203 WLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISLMGLKFNYfwLSLGLSGGVIVSFICF---RQVDLKSLIAYSSV 279
Cdd:PRK07691  231 WLPGSYYAPPIAIAALFGALLTKVGVYAIARTFTLFFSHDTSFTH--YLILILALLTIIFGVIgavAYFDIKKIIIYNIM 308
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 280 AHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMSlWWFLLSSSNMAAPP 359
Cdd:PRK07691  309 IAVGVILVGVAMMTESGMIGAIYYLIHDMIVKAALFLLIGIMIKITGTTDLKKMGGLIKRYPVLG-WMFFIAALSLAGIP 387
                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 1494235701 360 SLNlvGELSLLNSIMSWSSFSYITLIFLSFFSAVYTLY 397
Cdd:PRK07691  388 PLS--GFYGKFFIVEGTFEAGFYVSGIIVLLSSLLVLY 423
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
184-359 5.92e-03

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 38.80  E-value: 5.92e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 184 YVFMILAFLVKMPMFLFHLWLPKAhVEAPISGSMIL-AGVLLKLGGYGIFRVMKVISLMGLKFNYFWLSLGLSGGVIVSF 262
Cdd:PRK06525  210 FLGILFAAWGKSAQLPFYSWLPDA-MEAPTPASAYLhAASMVKVGVYIFARAIQSMGPIPHVIGYVGAVMAIVTLLYGFL 288
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 263 ICFRQVDLKSLIAYSSVAHMSMVIGGLMTM---NWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINL 339
Cdd:PRK06525  289 MYLPQQDMKRLLAYSTITQLGYMFFGLSLAilgSRLALEGSIAYIFNHAFAKSLFFLVAGALSYSCGTRLLPRLRGVLKK 368
                         170       180
                  ....*....|....*....|
gi 1494235701 340 MPSMSLWWFLLSSSNMAAPP 359
Cdd:PRK06525  369 LPLVGVGFCVAALAITGVPP 388
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
183-393 7.83e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 38.75  E-value: 7.83e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 183 FYVFMILAFLV----KMPMFLFHLWLPKAhVEAPI-------SGSMILAGVLLklggygifrVMKVISLMGLKFNYFWLs 251
Cdd:PRK12647  193 LYLAILLLVLGgaftKSAQFPFHFWLPNA-MEAPTpvsaylhSATMVKAGIYL---------LARLNPVLGGTPLWQTI- 261
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 252 LGLSGG---VIVSFICFRQVDLKSLIAYSSVahmsMVIGGLMTMNWWGCMGSLS----LMIGHGLCSSGLFCLSNIIYER 324
Cdd:PRK12647  262 LPLFGGltmLTGALLAVRQTDLKLILAYSTV----SALGTLVMLLGLGSELAIKaavlFLVAHSLYKGALFMVAGIIDHE 337
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1494235701 325 LGSRSLLINKGMINLMPSMSLWWFLLSSSNMAAPPSLNLVGELSLLNSIMSWSSFSyITLIFLSFFSAV 393
Cdd:PRK12647  338 TGTRDITKLGGLRRAMPITAAAALLAALSMAGLPPLFGFLAKELIYEALLEAPLWS-LILTVAAVLGNA 405
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
185-315 9.87e-03

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 38.17  E-value: 9.87e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235701 185 VFMILAFLVKMPMFLFHLWLPKAHVEAPISGSMILAGVLlKLGGYGIF-RVMkVISLMGLKFNYFWLSLGLSGGVIV--S 261
Cdd:COG1007   207 VLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAP-KIAAFAALlRLL-VEAFPGLAADWQLLLAVLAVLSMTvgN 284
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1494235701 262 FICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLF 315
Cdd:COG1007   285 LAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVSAALFYLLAYLFMNLGAF 338
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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