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Conserved domains on  [gi|1496231219|gb|AYN73256|]
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NADH dehydrogenase subunit 6, partial (mitochondrion) [Paulinia acuminata]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009599)

NADH dehydrogenase subunit 6 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 3-68 1.55e-15

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 214445  Cd Length: 160  Bit Score: 65.98  E-value: 1.55e-15
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1496231219   3 KLMIMTLSNVINFNFIKLSHPMSMMMFIIIQTFLVGIISGTMMESFWFSYILFLTYLGGMMVLFIY 68
Cdd:MTH00166    1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIY 66
 
Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 3-68 1.55e-15

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 65.98  E-value: 1.55e-15
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1496231219   3 KLMIMTLSNVINFNFIKLSHPMSMMMFIIIQTFLVGIISGTMMESFWFSYILFLTYLGGMMVLFIY 68
Cdd:MTH00166    1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIY 66
 
Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 3-68 1.55e-15

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 65.98  E-value: 1.55e-15
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1496231219   3 KLMIMTLSNVINFNFIKLSHPMSMMMFIIIQTFLVGIISGTMMESFWFSYILFLTYLGGMMVLFIY 68
Cdd:MTH00166    1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIY 66
ND6 MTH00152
NADH dehydrogenase subunit 6; Provisional
 1-68 2.33e-04

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214437  Cd Length: 163  Bit Score: 36.79  E-value: 2.33e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1496231219   1 MIKLMIMTLSNVINFNFIKLSHPMSMMMFIIIQTFLVGIISGtMMESFWFSYILFLTYLGGMMVLFIY 68
Cdd:MTH00152    1 MSLMILLSVCFSLFLLLPLSKQPLSLGLVLLLLSLFVCVEIG-LTLSSWYGYLLFLVYVGGLLVMFAY 67
ND6 MTH00212
NADH dehydrogenase subunit 6; Provisional
 1-68 2.66e-04

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214460  Cd Length: 160  Bit Score: 36.52  E-value: 2.66e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1496231219   1 MIKLMIMTLSNVINFNFIKLSHPMSMMMFIIIQTFLVGIISgTMMESFWFSYILFLTYLGGMMVLFIY 68
Cdd:MTH00212    1 MLLSLLLSLLLLLMLLFPLSAHPLTLGVSLLLSSLLSCLII-TMESNSWYGYILFLIYIGGLLVLFGY 67
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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