NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1549117397|gb|AZU96819|]
View 

cytochrome b, partial (mitochondrion) [Stenocephalemys albocaudata]

Protein Classification

cytochrome b( domain architecture ID 11475898)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-353 0e+00

cytochrome b; Provisional


:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 741.07  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397   1 DHSLINLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYMHANGASMFFICL 80
Cdd:MTH00100   15 NHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICL 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397  81 FLHVGRGMYYGSYTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTTLVEWIWGGFSVDKAT 160
Cdd:MTH00100   95 FLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKAT 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397 161 LTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDSDKIPFHPYYTIKDILGVILMFTLLVILVLFFPDLLGDPD 240
Cdd:MTH00100  175 LTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPD 254

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397 241 NYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLAFLPFLHTSKQRSLMFRPITQTLYWILVANLFV 320
Cdd:MTH00100  255 NYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLT 334

                         330       340       350
                  ....*....|....*....|....*....|...
gi 1549117397 321 LTWIGGQPVEHPFIIIGQLASISYFSIILILMP 353
Cdd:MTH00100  335 LTWIGGQPVEHPFIIIGQLASILYFLIILILMP 367
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-353 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 741.07  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397   1 DHSLINLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYMHANGASMFFICL 80
Cdd:MTH00100   15 NHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICL 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397  81 FLHVGRGMYYGSYTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTTLVEWIWGGFSVDKAT 160
Cdd:MTH00100   95 FLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKAT 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397 161 LTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDSDKIPFHPYYTIKDILGVILMFTLLVILVLFFPDLLGDPD 240
Cdd:MTH00100  175 LTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPD 254

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397 241 NYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLAFLPFLHTSKQRSLMFRPITQTLYWILVANLFV 320
Cdd:MTH00100  255 NYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLT 334

                         330       340       350
                  ....*....|....*....|....*....|...
gi 1549117397 321 LTWIGGQPVEHPFIIIGQLASISYFSIILILMP 353
Cdd:MTH00100  335 LTWIGGQPVEHPFIIIGQLASILYFLIILILMP 367
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
2-353 1.66e-136

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 393.77  E-value: 1.66e-136
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397   2 HSLINLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLF 81
Cdd:COG1290    25 REHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVY 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397  82 LHVGRGMYYGSYTFME--TWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTTLVEWIWGGFSVDKA 159
Cdd:COG1290   105 LHMFRGFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDA 184

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397 160 TLTRFFAFH-FILPFIITALVIVHLLFLHETGSNNPTG----LNSDSDKIPFHPYYTIKDILGVILMFTLLVILVLFFPD 234
Cdd:COG1290   185 TLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI 264

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397 235 llGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALVLSILVLAFLPFLHTSKQRSLMFRPITQTLYW 312
Cdd:COG1290   265 --NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGV 342

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 1549117397 313 ILVANLFVLTWIGGQPVehPFIIIGQLASISYFSIILILMP 353
Cdd:COG1290   343 AFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLP 381
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-192 3.01e-92

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 273.86  E-value: 3.01e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397   1 DHSLINLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYMHANGASMFFICL 80
Cdd:cd00284     7 NNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLML 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397  81 FLHVGRGMYYGSY--TFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTTLVEWIWGGFSVDK 158
Cdd:cd00284    87 YLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDN 166

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1549117397 159 ATLTRFFAFHFILPFIITALVIVHLLFLHETGSN 192
Cdd:cd00284   167 ATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
4-190 2.48e-84

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 253.46  E-value: 2.48e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397   4 LINLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLH 83
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397  84 VGRGMYYG--SYTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTTLVEWIWGGFSVDKATL 161
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1549117397 162 TRFFAFHFILPFIITALVIVHLLFLHETG 190
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 222-325 1.05e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 56.73  E-value: 1.05e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397 222 FTLLVILVLFFPDLLGDPdnytpANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLAFLPFLHT-SKQRS 300
Cdd:TIGR01156  48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQN 122

                          90       100
                  ....*....|....*....|....*
gi 1549117397 301 LMFRPITQTLYWIlvaNLFVLTWIG 325
Cdd:TIGR01156 123 PFRRPVATTVFLF---GTVVALWLG 144
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-353 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 741.07  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397   1 DHSLINLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYMHANGASMFFICL 80
Cdd:MTH00100   15 NHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICL 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397  81 FLHVGRGMYYGSYTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTTLVEWIWGGFSVDKAT 160
Cdd:MTH00100   95 FLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKAT 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397 161 LTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDSDKIPFHPYYTIKDILGVILMFTLLVILVLFFPDLLGDPD 240
Cdd:MTH00100  175 LTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPD 254

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397 241 NYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLAFLPFLHTSKQRSLMFRPITQTLYWILVANLFV 320
Cdd:MTH00100  255 NYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLT 334

                         330       340       350
                  ....*....|....*....|....*....|...
gi 1549117397 321 LTWIGGQPVEHPFIIIGQLASISYFSIILILMP 353
Cdd:MTH00100  335 LTWIGGQPVEHPFIIIGQLASILYFLIILILMP 367
CYTB MTH00119
cytochrome b; Provisional
 2-353 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 676.62  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397   2 HSLINLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLF 81
Cdd:MTH00119   17 NSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIY 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397  82 LHVGRGMYYGSYTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTTLVEWIWGGFSVDKATL 161
Cdd:MTH00119   97 LHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTL 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397 162 TRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDSDKIPFHPYYTIKDILGVILMFTLLVILVLFFPDLLGDPDN 241
Cdd:MTH00119  177 TRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPEN 256

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397 242 YTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLAFLPFLHTSKQRSLMFRPITQTLYWILVANLFVL 321
Cdd:MTH00119  257 FTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLIL 336

                         330       340       350
                  ....*....|....*....|....*....|..
gi 1549117397 322 TWIGGQPVEHPFIIIGQLASISYFSIILILMP 353
Cdd:MTH00119  337 TWIGSQPVEHPFIIIGQLASILYFTILLILFP 368
CYTB MTH00131
cytochrome b; Provisional
 1-353 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 662.50  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397   1 DHSLINLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYMHANGASMFFICL 80
Cdd:MTH00131   15 NDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICI 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397  81 FLHVGRGMYYGSYTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTTLVEWIWGGFSVDKAT 160
Cdd:MTH00131   95 YLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNAT 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397 161 LTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDSDKIPFHPYYTIKDILGVILMFTLLVILVLFFPDLLGDPD 240
Cdd:MTH00131  175 LTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPD 254

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397 241 NYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLAFLPFLHTSKQRSLMFRPITQTLYWILVANLFV 320
Cdd:MTH00131  255 NFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLI 334

                         330       340       350
                  ....*....|....*....|....*....|...
gi 1549117397 321 LTWIGGQPVEHPFIIIGQLASISYFSIILILMP 353
Cdd:MTH00131  335 LTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMP 367
CYTB MTH00074
cytochrome b; Provisional
 1-353 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 643.27  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397   1 DHSLINLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYMHANGASMFFICL 80
Cdd:MTH00074   16 NNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICI 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397  81 FLHVGRGMYYGSYTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTTLVEWIWGGFSVDKAT 160
Cdd:MTH00074   96 YLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKAT 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397 161 LTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDSDKIPFHPYYTIKDILGVILMFTLLVILVLFFPDLLGDPD 240
Cdd:MTH00074  176 LTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPD 255

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397 241 NYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLAFLPFLHTSKQRSLMFRPITQTLYWILVANLFV 320
Cdd:MTH00074  256 NFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLI 335

                         330       340       350
                  ....*....|....*....|....*....|...
gi 1549117397 321 LTWIGGQPVEHPFIIIGQLASISYFSIILILMP 353
Cdd:MTH00074  336 LTWIGGQPVEDPFIEIGQAASILYFLLFIIIIP 368
CYTB MTH00191
cytochrome b; Provisional
 2-353 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 632.34  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397   2 HSLINLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLF 81
Cdd:MTH00191   13 GSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIY 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397  82 LHVGRGMYYGSYTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTTLVEWIWGGFSVDKATL 161
Cdd:MTH00191   93 LHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATL 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397 162 TRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDSDKIPFHPYYTIKDILGVILMFTLLVILVLFFPDLLGDPDN 241
Cdd:MTH00191  173 TRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPEN 252

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397 242 YTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLAFLPFLHTSKQRSLMFRPITQTLYWILVANLFVL 321
Cdd:MTH00191  253 FIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILL 332

                         330       340       350
                  ....*....|....*....|....*....|..
gi 1549117397 322 TWIGGQPVEHPFIIIGQLASISYFSIILILMP 353
Cdd:MTH00191  333 TWLGGQPVEDPFILLGQISSFLYFFLFLLLFP 364
CYTB MTH00156
cytochrome b; Provisional
 2-352 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 628.74  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397   2 HSLINLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLF 81
Cdd:MTH00156    6 NSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIY 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397  82 LHVGRGMYYGSYTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTTLVEWIWGGFSVDKATL 161
Cdd:MTH00156   86 LHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATL 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397 162 TRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDSDKIPFHPYYTIKDILGVILMFTLLVILVLFFPDLLGDPDN 241
Cdd:MTH00156  166 TRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPEN 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397 242 YTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLAFLPFLHTSKQRSLMFRPITQTLYWILVANLFVL 321
Cdd:MTH00156  246 FIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILL 325

                         330       340       350
                  ....*....|....*....|....*....|.
gi 1549117397 322 TWIGGQPVEHPFIIIGQLASISYFSIILILM 352
Cdd:MTH00156  326 TWIGARPVEEPYILTGQILTILYFLYFIINP 356
CYTB MTH00145
cytochrome b; Provisional
 3-351 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 595.73  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397   3 SLINLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFL 82
Cdd:MTH00145   18 SLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYL 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397  83 HVGRGMYYGSYTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTTLVEWIWGGFSVDKATLT 162
Cdd:MTH00145   98 HIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLK 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397 163 RFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDSDKIPFHPYYTIKDILGVILMFTLLVILVLFFPDLLGDPDNY 242
Cdd:MTH00145  178 RFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENF 257

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397 243 TPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLAFLPFLHTSKQRSLMFRPITQTLYWILVANLFVLT 322
Cdd:MTH00145  258 IPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILT 337

                         330       340
                  ....*....|....*....|....*....
gi 1549117397 323 WIGGQPVEHPFIIIGQLASISYFSIILIL 351
Cdd:MTH00145  338 WIGACPVEEPYETIGQVFTVLYFLFFLIL 366
CYTB MTH00034
cytochrome b; Validated
 3-353 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 579.35  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397   3 SLINLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFL 82
Cdd:MTH00034   17 SLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYF 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397  83 HVGRGMYYGSYTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTTLVEWIWGGFSVDKATLT 162
Cdd:MTH00034   97 HIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLT 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397 163 RFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDSDKIPFHPYYTIKDILGVILMFTLLVILVLFFPDLLGDPDNY 242
Cdd:MTH00034  177 RFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENF 256

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397 243 TPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLAFLPFLHTSKQRSLMFRPITQTLYWILVANLFVLT 322
Cdd:MTH00034  257 IPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILT 336

                         330       340       350
                  ....*....|....*....|....*....|.
gi 1549117397 323 WIGGQPVEHPFIIIGQLASISYFSIILILMP 353
Cdd:MTH00034  337 WIGSQPVEYPFILLGQVASVLYFSLFLFFFP 367
CYTB MTH00016
cytochrome b; Validated
 3-351 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 554.67  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397   3 SLINLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFL 82
Cdd:MTH00016   18 SLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYL 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397  83 HVGRGMYYGSYTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTTLVEWIWGGFSVDKATLT 162
Cdd:MTH00016   98 HIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLT 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397 163 RFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDSDKIPFHPYYTIKDILGVILMFTLLVILVLFFPDLLGDPDNY 242
Cdd:MTH00016  178 RFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENF 257

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397 243 TPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLAFLPFLHTSKQRSLMFRPITQTLYWILVANLFVLT 322
Cdd:MTH00016  258 IPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLT 337

                         330       340
                  ....*....|....*....|....*....
gi 1549117397 323 WIGGQPVEHPFIIIGQLASISYFSIILIL 351
Cdd:MTH00016  338 WIGGRPVEPPYEFLGQIFTVFYFFYFMIN 366
CYTB MTH00022
cytochrome b; Validated
 4-353 1.03e-180

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 505.39  E-value: 1.03e-180
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397   4 LINLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLH 83
Cdd:MTH00022   17 LVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIH 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397  84 VGRGMYYGSYTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTTLVEWIWGGFSVDKATLTR 163
Cdd:MTH00022   97 IGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNR 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397 164 FFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDSDKIPFHPYYTIKDILGVILMFTLLVILVLFFPDLLGDPDNYT 243
Cdd:MTH00022  177 FFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFI 256

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397 244 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLAFLPFLHTSKQRSLMFRPITQTLYWILVANLFVLTW 323
Cdd:MTH00022  257 QANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTW 336

                         330       340       350
                  ....*....|....*....|....*....|
gi 1549117397 324 IGGQPVEHPFIIIGQLASISYFSIILILMP 353
Cdd:MTH00022  337 IGSQVVEEPFILIGQLLSFFYFFYFLVLIP 366
CYTB MTH00053
cytochrome b; Provisional
 4-353 7.10e-179

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 500.77  E-value: 7.10e-179
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397   4 LINLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLH 83
Cdd:MTH00053   19 FIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFH 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397  84 VGRGMYYGSYTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTTLVEWIWGGFSVDKATLTR 163
Cdd:MTH00053   99 IGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNR 178

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397 164 FFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDSDKIPFHPYYTIKDILGVILMFTLLVILVLFFPDLLGDPDNYT 243
Cdd:MTH00053  179 FYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFK 258

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397 244 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLAFLPFLHTSKQRSLMFRPITQTLYWILVANLFVLTW 323
Cdd:MTH00053  259 QANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTW 338

                         330       340       350
                  ....*....|....*....|....*....|
gi 1549117397 324 IGGQPVEHPFIIIGQLASISYFSIILILMP 353
Cdd:MTH00053  339 IGGQPVEEPYILIGQIASIFYFAYFLILMP 368
CYTB MTH00224
cytochrome b; Provisional
 3-350 2.09e-175

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 492.13  E-value: 2.09e-175
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397   3 SLINLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFL 82
Cdd:MTH00224   18 SLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYL 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397  83 HVGRGMYYGSYTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTTLVEWIWGGFSVDKATLT 162
Cdd:MTH00224   98 HVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLN 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397 163 RFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDSDKIPFHPYYTIKDILGVILMFTLLVILVLFFPDLLGDPDNY 242
Cdd:MTH00224  178 RFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENF 257

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397 243 TPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLAFLPFLHTSKQRSLMFRPITQTLYWILVANLFVLT 322
Cdd:MTH00224  258 LMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILT 337

                         330       340
                  ....*....|....*....|....*...
gi 1549117397 323 WIGGQPVEHPFIIIGQLASISYFSIILI 350
Cdd:MTH00224  338 WIGGRPVEDPFEGIGQVFTILYFSYFII 365
CYTB MTH00033
cytochrome b; Provisional
 2-353 2.28e-139

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 400.85  E-value: 2.28e-139
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397   2 HSLINLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLF 81
Cdd:MTH00033   13 NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVY 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397  82 LHVGRGMYYGSYTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTTLVEWIWGGFSVDKATL 161
Cdd:MTH00033   93 CHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTL 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397 162 TRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDSDKIPFHPYYTIKDILGVILMFTLLVILVL--FFPDLLGDP 239
Cdd:MTH00033  173 NRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIepRIETLLQDP 252

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397 240 DNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLAFLPFLHTSKQRSLMFRPITQTLYWILVANLF 319
Cdd:MTH00033  253 ENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFI 332

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 1549117397 320 VLTWIGGQPV-EHPFIIIGQLASISYFSIILILMP 353
Cdd:MTH00033  333 ILTWIGSAPAgADPYVLIGRIATIFYFGYFLVLVP 367
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
2-353 1.66e-136

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 393.77  E-value: 1.66e-136
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397   2 HSLINLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLF 81
Cdd:COG1290    25 REHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVY 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397  82 LHVGRGMYYGSYTFME--TWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTTLVEWIWGGFSVDKA 159
Cdd:COG1290   105 LHMFRGFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDA 184

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397 160 TLTRFFAFH-FILPFIITALVIVHLLFLHETGSNNPTG----LNSDSDKIPFHPYYTIKDILGVILMFTLLVILVLFFPD 234
Cdd:COG1290   185 TLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI 264

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397 235 llGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALVLSILVLAFLPFLHTSKQRSLMFRPITQTLYW 312
Cdd:COG1290   265 --NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGV 342

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 1549117397 313 ILVANLFVLTWIGGQPVehPFIIIGQLASISYFSIILILMP 353
Cdd:COG1290   343 AFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLP 381
CYTB MTH00086
cytochrome b; Provisional
 4-352 2.65e-125

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 363.88  E-value: 2.65e-125
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397   4 LINLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLH 83
Cdd:MTH00086    7 VVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLH 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397  84 VGRGMYYGSYTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTTLVEWIWGGFSVDKATLTR 163
Cdd:MTH00086   87 IFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKF 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397 164 FFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDSDKIPFHPYYTIKDILGVILMFtLLVILVLFFPDLLGDPDNYT 243
Cdd:MTH00086  167 FFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWL-VFIIFSLFYPFNLGDPEMFI 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397 244 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLAFLPFLHTSKQrslMFRPITQTLYWILVANLFVLTW 323
Cdd:MTH00086  246 EADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNYTS---CLNKLNKFLVFSFIVVNVILSW 322

                         330       340
                  ....*....|....*....|....*....
gi 1549117397 324 IGGQPVEHPFIIIGQLASISYFSIILILM 352
Cdd:MTH00086  323 LGQCLVEYPFLFLSQIFSFIYFFLILLML 351
CYTB MTH00046
cytochrome b; Validated
 4-350 8.43e-95

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 286.11  E-value: 8.43e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397   4 LINLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLH 83
Cdd:MTH00046    9 LIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIH 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397  84 VGRGMYYGSYTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTTLVEWIWGGFSVDKATLTR 163
Cdd:MTH00046   89 MGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVR 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397 164 FFAFHFILPFIITALVIVHLLFLHETGSNNPTGL-NSDSDKIPFHPYYTIKDILGVILMFTLLVILVLFFPDLLGDPDNY 242
Cdd:MTH00046  169 VFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSsNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAY 248

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397 243 TPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGvLALVLSILVLAFLPflhtSKQRSLMFRPITQTLYWILVANLFVLT 322
Cdd:MTH00046  249 LEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG-LVLVLSFLFFLWVP----TFNGSSVYSVWRQVNFWLIVSLFFSLS 323

                         330       340
                  ....*....|....*....|....*...
gi 1549117397 323 WIGGQPVEHPFIIIGQLASISYFSIILI 350
Cdd:MTH00046  324 YLGGCHPEYPYLLISQLFSVLMVLLLFI 351
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-192 3.01e-92

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 273.86  E-value: 3.01e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397   1 DHSLINLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYMHANGASMFFICL 80
Cdd:cd00284     7 NNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLML 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397  81 FLHVGRGMYYGSY--TFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTTLVEWIWGGFSVDK 158
Cdd:cd00284    87 YLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDN 166

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1549117397 159 ATLTRFFAFHFILPFIITALVIVHLLFLHETGSN 192
Cdd:cd00284   167 ATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
4-190 2.48e-84

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 253.46  E-value: 2.48e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397   4 LINLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLH 83
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397  84 VGRGMYYG--SYTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTTLVEWIWGGFSVDKATL 161
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1549117397 162 TRFFAFHFILPFIITALVIVHLLFLHETG 190
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 193-340 5.29e-57

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 182.08  E-value: 5.29e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397 193 NPTGLNSDSDKIPFHPYYTIKDILGVILMFTLLVILVLFFPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPN 272
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1549117397 273 KLGGVLALVLSILVLAFLPFLHTSKQRSlMFRPITQTLYWILVANLFVLTWIGGQPVEHPFIIIGQLA 340
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
244-344 2.87e-48

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 158.03  E-value: 2.87e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397 244 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLAFLPFLHTSKQRSLMFRPITQTLYWILVANLFVLTW 323
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 1549117397 324 IGGQPVEHPFIIIGQLASISY 344
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
74-239 1.02e-45

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 153.94  E-value: 1.02e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397  74 SMFFICLFLHVGRGMYYGSYTFME--TWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTTLVEWIW 151
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397 152 GGFSVDKATLTRFFAFHF-ILPFIITALVIVHLLFLHETGSNNPTGLNSDSDKIPFHPYYTIKDILGVILMFTLLVILVL 230
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 1549117397 231 FFPDLLGDP 239
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 19-194 1.47e-40

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 142.16  E-value: 1.47e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397  19 FGSLLGICLMIQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHVGRGMYYGSYTFME- 97
Cdd:PRK03735   44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397  98 -TWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTTLVEWIWGGFSVDKATLTRFFAFH-FILPFII 175
Cdd:PRK03735  124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                         170
                  ....*....|....*....
gi 1549117397 176 TALVIVHLLFLHETGSNNP 194
Cdd:PRK03735  204 AVLMLAHFLMIRKQGISGP 222
petB CHL00070
cytochrome b6
 10-194 7.28e-34

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 124.45  E-value: 7.28e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397  10 PSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHVGRGMY 89
Cdd:CHL00070   27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397  90 YGSYTFME--TWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTTLVEWIWGGFSVDKATLTRFFAF 167
Cdd:CHL00070  107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                         170       180
                  ....*....|....*....|....*...
gi 1549117397 168 H-FILPFIITALVIVHLLFLHETGSNNP 194
Cdd:CHL00070  187 HtFVLPLLTAVFMLMHFLMIRKQGISGP 214
petD CHL00058
cytochrome b6/f complex subunit IV
 215-325 2.80e-12

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 63.87  E-value: 2.80e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397 215 ILGVilmFTLLVILVLFFPDLLGDPdnytpANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLAFLPFLH 294
Cdd:CHL00058   44 ILGT---IACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLE 115

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1549117397 295 TSKQRSLMF-RPITQTLYWIlvaNLFVLTWIG 325
Cdd:CHL00058  116 NVNKFQNPFrRPVATTVFLI---GTAVALWLG 144
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 215-325 2.85e-11

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 61.35  E-value: 2.85e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397 215 ILGVILM--FTLLVILVLFFPDLLGDPdnytpANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLAFLPF 292
Cdd:COG5679    40 IFPVVILgtIALCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPF 114

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1549117397 293 LHT-SKQRSLMFRPITQTLYwiLVANLFVLtWIG 325
Cdd:COG5679   115 IENvNKFQNPFRRPVATAVF--LFGTLVTL-WLG 145
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 222-325 1.05e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 56.73  E-value: 1.05e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549117397 222 FTLLVILVLFFPDLLGDPdnytpANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLAFLPFLHT-SKQRS 300
Cdd:TIGR01156  48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQN 122

                          90       100
                  ....*....|....*....|....*
gi 1549117397 301 LMFRPITQTLYWIlvaNLFVLTWIG 325
Cdd:TIGR01156 123 PFRRPVATTVFLF---GTVVALWLG 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH