|
Name |
Accession |
Description |
Interval |
E-value |
| SLC5-6-like_sbd super family |
cl00456 |
Solute carrier families 5 and 6-like; solute binding domain; This superfamily includes the ... |
8-156 |
1.14e-21 |
|
Solute carrier families 5 and 6-like; solute binding domain; This superfamily includes the solute-binding domain of SLC5 proteins (also called the sodium/glucose cotransporters or solute sodium symporters), SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporters or Na+/Cl--dependent transporters), and nucleobase-cation-symport-1 (NCS1) transporters. SLC5s co-transport Na+ with sugars, amino acids, inorganic ions or vitamins. SLC6s include Na+/Cl--dependent plasma membrane transporters for the monoamine neurotransmitters serotonin, dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. NCS1s are essential components of salvage pathways for nucleobases and related metabolites; their known substrates include allantoin, uracil, thiamine, and nicotinamide riboside. Members of this superfamily are important in human physiology and disease. They contain a functional core of 10 transmembrane helices (TMs): an inverted structural repeat, TMs1-5 and TMs6-10; TMs numbered to conform to the SLC6 Aquifex aeolicus LeuT.
The actual alignment was detected with superfamily member pfam01490:
Pssm-ID: 444915 Cd Length: 410 Bit Score: 97.38 E-value: 1.14e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21751771 8 SLNVVTTFYVMVGFFGYVSFTEATAGNVLMHFP-SNLVTEMLRVGFMMSVAVGFPMMILPCRQALSTLLceqQQKDGTFA 86
Cdd:pfam01490 235 AIIIATVLYILIGLVGYLAFGDNVKGNILLNLPkSAWLIDIANLLLVLHVILSFPLQLFPIRQIVENLL---FRKEAPFG 311
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 21751771 87 AGGYMPP---LRFKALTLSVVFGTMVGGILIPNVETILGLTGATMGSLICFICPALIYKKIHKNALSSQVVLW 156
Cdd:pfam01490 312 ASGKNNPkskLLRVVIRSGLVVITYLIAISVPFFGDLLSLVGATSCAPLSFILPPLFHLKLKKTKKKSQEKLW 384
|
|
| dnaA super family |
cl42516 |
chromosomal replication initiator protein DnaA; |
314-511 |
4.90e-06 |
|
chromosomal replication initiator protein DnaA;
The actual alignment was detected with superfamily member PRK14086:
Pssm-ID: 455861 [Multi-domain] Cd Length: 617 Bit Score: 49.44 E-value: 4.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21751771 314 APPLPDSEREKQEPEQGEVGKRPGQAQALEEAGDLPEDPqkvPEADGQPAVQPAKEDLGPGDR-GLHPRPQAVLSEQQNG 392
Cdd:PRK14086 95 PAPPPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGL---PRQDQLPTARPAYPAYQQRPEpGAWPRAADDYGWQQQR 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21751771 393 LavgggekakgGPPPGNaagDTGQPAEDSdhggkPPLPAEKPAPGPGLPPEPREQRDVERAGGNQAASQLEGKASALQPP 472
Cdd:PRK14086 172 L----------GFPPRA---PYASPASYA-----PEQERDREPYDAGRPEYDQRRRDYDHPRPDWDRPRRDRTDRPEPPP 233
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 21751771 473 ASG-PGSGSPLPQPWGDAQVILGSPARP-PFSFQPPAEQTP 511
Cdd:PRK14086 234 GAGhVHRGGPGPPERDDAPVVPIRPSAPgPLAAQPAPAPGP 274
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Aa_trans |
pfam01490 |
Transmembrane amino acid transporter protein; This transmembrane region is found in many amino ... |
8-156 |
1.14e-21 |
|
Transmembrane amino acid transporter protein; This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases.
Pssm-ID: 279788 Cd Length: 410 Bit Score: 97.38 E-value: 1.14e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21751771 8 SLNVVTTFYVMVGFFGYVSFTEATAGNVLMHFP-SNLVTEMLRVGFMMSVAVGFPMMILPCRQALSTLLceqQQKDGTFA 86
Cdd:pfam01490 235 AIIIATVLYILIGLVGYLAFGDNVKGNILLNLPkSAWLIDIANLLLVLHVILSFPLQLFPIRQIVENLL---FRKEAPFG 311
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 21751771 87 AGGYMPP---LRFKALTLSVVFGTMVGGILIPNVETILGLTGATMGSLICFICPALIYKKIHKNALSSQVVLW 156
Cdd:pfam01490 312 ASGKNNPkskLLRVVIRSGLVVITYLIAISVPFFGDLLSLVGATSCAPLSFILPPLFHLKLKKTKKKSQEKLW 384
|
|
| PTZ00206 |
PTZ00206 |
amino acid transporter; Provisional |
8-141 |
4.81e-11 |
|
amino acid transporter; Provisional
Pssm-ID: 240313 Cd Length: 467 Bit Score: 64.89 E-value: 4.81e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21751771 8 SLNVVTTFYVMVGFFGYVSFTEATAGNVLMHF-PSNLVTEMLR-VGFMMSVAVGFPMMILPCRQALSTLLCEQQQKDGTF 85
Cdd:PTZ00206 297 AMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYdPVNEPAIMVGfVGVLVKLFVSYALLGMACRNALYDVIGWDARKVAFW 376
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 21751771 86 AAGgympplrFKALTLSVVFgtMVGGILIPNVETILGLTGATMGSLICFICPALIY 141
Cdd:PTZ00206 377 KHC-------IAVVTLSVVM--LLCGLFIPKINTVLGFAGSISGGLLGFILPALLF 423
|
|
| dnaA |
PRK14086 |
chromosomal replication initiator protein DnaA; |
314-511 |
4.90e-06 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 237605 [Multi-domain] Cd Length: 617 Bit Score: 49.44 E-value: 4.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21751771 314 APPLPDSEREKQEPEQGEVGKRPGQAQALEEAGDLPEDPqkvPEADGQPAVQPAKEDLGPGDR-GLHPRPQAVLSEQQNG 392
Cdd:PRK14086 95 PAPPPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGL---PRQDQLPTARPAYPAYQQRPEpGAWPRAADDYGWQQQR 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21751771 393 LavgggekakgGPPPGNaagDTGQPAEDSdhggkPPLPAEKPAPGPGLPPEPREQRDVERAGGNQAASQLEGKASALQPP 472
Cdd:PRK14086 172 L----------GFPPRA---PYASPASYA-----PEQERDREPYDAGRPEYDQRRRDYDHPRPDWDRPRRDRTDRPEPPP 233
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 21751771 473 ASG-PGSGSPLPQPWGDAQVILGSPARP-PFSFQPPAEQTP 511
Cdd:PRK14086 234 GAGhVHRGGPGPPERDDAPVVPIRPSAPgPLAAQPAPAPGP 274
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Aa_trans |
pfam01490 |
Transmembrane amino acid transporter protein; This transmembrane region is found in many amino ... |
8-156 |
1.14e-21 |
|
Transmembrane amino acid transporter protein; This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases.
Pssm-ID: 279788 Cd Length: 410 Bit Score: 97.38 E-value: 1.14e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21751771 8 SLNVVTTFYVMVGFFGYVSFTEATAGNVLMHFP-SNLVTEMLRVGFMMSVAVGFPMMILPCRQALSTLLceqQQKDGTFA 86
Cdd:pfam01490 235 AIIIATVLYILIGLVGYLAFGDNVKGNILLNLPkSAWLIDIANLLLVLHVILSFPLQLFPIRQIVENLL---FRKEAPFG 311
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 21751771 87 AGGYMPP---LRFKALTLSVVFGTMVGGILIPNVETILGLTGATMGSLICFICPALIYKKIHKNALSSQVVLW 156
Cdd:pfam01490 312 ASGKNNPkskLLRVVIRSGLVVITYLIAISVPFFGDLLSLVGATSCAPLSFILPPLFHLKLKKTKKKSQEKLW 384
|
|
| PTZ00206 |
PTZ00206 |
amino acid transporter; Provisional |
8-141 |
4.81e-11 |
|
amino acid transporter; Provisional
Pssm-ID: 240313 Cd Length: 467 Bit Score: 64.89 E-value: 4.81e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21751771 8 SLNVVTTFYVMVGFFGYVSFTEATAGNVLMHF-PSNLVTEMLR-VGFMMSVAVGFPMMILPCRQALSTLLCEQQQKDGTF 85
Cdd:PTZ00206 297 AMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYdPVNEPAIMVGfVGVLVKLFVSYALLGMACRNALYDVIGWDARKVAFW 376
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 21751771 86 AAGgympplrFKALTLSVVFgtMVGGILIPNVETILGLTGATMGSLICFICPALIY 141
Cdd:PTZ00206 377 KHC-------IAVVTLSVVM--LLCGLFIPKINTVLGFAGSISGGLLGFILPALLF 423
|
|
| dnaA |
PRK14086 |
chromosomal replication initiator protein DnaA; |
314-511 |
4.90e-06 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 237605 [Multi-domain] Cd Length: 617 Bit Score: 49.44 E-value: 4.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21751771 314 APPLPDSEREKQEPEQGEVGKRPGQAQALEEAGDLPEDPqkvPEADGQPAVQPAKEDLGPGDR-GLHPRPQAVLSEQQNG 392
Cdd:PRK14086 95 PAPPPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGL---PRQDQLPTARPAYPAYQQRPEpGAWPRAADDYGWQQQR 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21751771 393 LavgggekakgGPPPGNaagDTGQPAEDSdhggkPPLPAEKPAPGPGLPPEPREQRDVERAGGNQAASQLEGKASALQPP 472
Cdd:PRK14086 172 L----------GFPPRA---PYASPASYA-----PEQERDREPYDAGRPEYDQRRRDYDHPRPDWDRPRRDRTDRPEPPP 233
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 21751771 473 ASG-PGSGSPLPQPWGDAQVILGSPARP-PFSFQPPAEQTP 511
Cdd:PRK14086 234 GAGhVHRGGPGPPERDDAPVVPIRPSAPgPLAAQPAPAPGP 274
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
171-514 |
6.60e-06 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 49.40 E-value: 6.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21751771 171 SVSEEVPEDLAEEAPG---GRLGEAEGLMKVEAARLSAQDPVVAVAEDGREKPKLPKEREELEQAQIKGPVDVPGREDGK 247
Cdd:PHA03307 26 ATPGDAADDLLSGSQGqlvSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGS 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21751771 248 EAPEEAQLDRPGQGIAVPVGEAHRHEPPVPHDKVVVDEGQDREVPEENKPPSRHAGGKAPGVQ-GQMAPPLPDSEREKQE 326
Cdd:PHA03307 106 PTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASsRQAALPLSSPEETARA 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21751771 327 PEQGEVGKRPGQAQALEEAGDLPEDPqkvPEADGQPAVQPAkeDLGPGDRGLHPRPQAVLSEQQNGLAVGGGEKAKGGPP 406
Cdd:PHA03307 186 PSSPPAEPPPSTPPAAASPRPPRRSS---PISASASSPAPA--PGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRP 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21751771 407 PGNAAGDTGQPAEDSDHGGKPPLPAEKPAPGPGLPPEPREQRD-------VERAGGNQAASQLEGKASALQPPASGPGSG 479
Cdd:PHA03307 261 APITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPgsgpapsSPRASSSSSSSRESSSSSTSSSSESSRGAA 340
|
330 340 350
....*....|....*....|....*....|....*
gi 21751771 480 SPLPQPWGDAqvilGSPARPPFSFQPPAEQTPRRA 514
Cdd:PHA03307 341 VSPGPSPSRS----PSPSRPPPPADPSSPRKRPRP 371
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
303-511 |
1.04e-05 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 48.44 E-value: 1.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21751771 303 GGKAPGVQGQMAPPLPDSEREKQEPEQGEVGKRPGQAQALEEAGDLPEDPQKVPEADGQPAVQPAKEDLGPGDRGLHPRP 382
Cdd:PRK07764 591 APGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWP 670
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21751771 383 QAVlseqqnglAVGGGEKAKGGPPPGNAAGDTGQPAedsdhggkpplPAEKPAPGPGLPPEPREQRDVERAGGNQAASQL 462
Cdd:PRK07764 671 AKA--------GGAAPAAPPPAPAPAAPAAPAGAAP-----------AQPAPAPAATPPAGQADDPAAQPPQAAQGASAP 731
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 21751771 463 EGKASALQPPASGPGSGSPLPQPWGDAQVILGSPARPPFSFQPPAEQTP 511
Cdd:PRK07764 732 SPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPS 780
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
307-519 |
5.18e-05 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 46.02 E-value: 5.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21751771 307 PGVQGQMAPPLPdserekqePEQGEVGKRPGQAQALEEAGDLPEDPQKVPEAdgQPAVQPAKEDLGPGDRGLHPRPQAVL 386
Cdd:PRK12323 365 PGQSGGGAGPAT--------AAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAA--APAAAAAARAVAAAPARRSPAPEALA 434
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21751771 387 SEQQNGLAVGGGEKAkggPPPGNAAGDTGQPAedsdhggkPPLPAEKPAPGPGLPPEPREQRDVERAGGNQAASQLEGKA 466
Cdd:PRK12323 435 AARQASARGPGGAPA---PAPAPAAAPAAAAR--------PAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELP 503
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 21751771 467 SALqpPASGPGSGSPLPQPWG-----DAQVILGSPARPPFSFQPPAEQTPRRAFCSLP 519
Cdd:PRK12323 504 PEF--ASPAPAQPDAAPAGWVaesipDPATADPDDAFETLAPAPAAAPAPRAAAATEP 559
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
202-513 |
1.02e-04 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 45.31 E-value: 1.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21751771 202 RLSAQDPVVAVAEDGREKPKlPKEREELEQAQIKGPVDVPGREDGKEAPEEAQLDR----PGQGIAVPVGEAHRHEPPVP 277
Cdd:PHA03247 2685 RRAARPTVGSLTSLADPPPP-PPTPEPAPHALVSATPLPPGPAAARQASPALPAAPappaVPAGPATPGGPARPARPPTT 2763
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21751771 278 hdkvvvdegqdrEVPEENKPPSRHAGGKAPgvqgQMAPPLPDSEREKQEPEQGEVGKRPGQAQALEEAGDLPEDPQKVPE 357
Cdd:PHA03247 2764 ------------AGPPAPAPPAAPAAGPPR----RLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGP 2827
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21751771 358 ADGQPAVQPAKEDLGPGdrglhPRPQavlSEQQNGLAVGGGEKAKGGPPPGNAAGDTGQPAEDSDHGGKPPLP-AEKPAP 436
Cdd:PHA03247 2828 LPPPTSAQPTAPPPPPG-----PPPP---SLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSrSTESFA 2899
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 21751771 437 GPGLPPEPREQRDV-ERAGGNQAASQLEGKASALQPPASGPGSGSPLPQPWGDAQVILGSPARPPFSFQPPAEQTPRR 513
Cdd:PHA03247 2900 LPPDQPERPPQPQApPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRF 2977
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
213-519 |
1.67e-04 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 44.93 E-value: 1.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21751771 213 AEDGREKPKLPKEREELEQAQIKGPVDVPGREDGKEAPEEAQLDRPGQGIAVPVGEAHRHEPPVPHDKVVVDEGQDREVP 292
Cdd:PHA03247 2628 PPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPT 2707
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21751771 293 EENKPPsrhaggkaPGVQGQMAPPLPDSEREKQEPEQGEVGKRPGQAQALEEAGDLPedPQKVPEADGQPAVQPAKEDLG 372
Cdd:PHA03247 2708 PEPAPH--------ALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPAR--PARPPTTAGPPAPAPPAAPAA 2777
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21751771 373 PGDRGLHPRPQAVLSEQQNGL--------------AVGGGEKAKGGPPPGNAAGDTGQPAEDSDHGGKPPL--------- 429
Cdd:PHA03247 2778 GPPRRLTRPAVASLSESRESLpspwdpadppaavlAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPslplggsva 2857
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21751771 430 ---------PAEKPAPGPGLPPEPREQRdVERAGGNQAASQLEGKASALQPPASGPGSGSPLPQPWGDAQVILGSPARPP 500
Cdd:PHA03247 2858 pggdvrrrpPSRSPAAKPAAPARPPVRR-LARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPP 2936
|
330
....*....|....*....
gi 21751771 501 FSFQPPAEQTPRRAFCSLP 519
Cdd:PHA03247 2937 PRPQPPLAPTTDPAGAGEP 2955
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
296-514 |
2.19e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 44.07 E-value: 2.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21751771 296 KPPSRHAGGKAPGVQGQMAPPLPDSEREKQEPEQGEVGKRPGQAQALEEAGDLPEDPQKVPEADGQPAVQPAKEDLGPGD 375
Cdd:PRK07003 386 RAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDE 465
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21751771 376 RGLHPRPQAVLSEQQNGLAVGGGEKAKgGPPPGNAAGDTGQPAEDSDHGGKPPLPAEKPAPGPGLP----PEPREQRDVE 451
Cdd:PRK07003 466 RDAQPPADSGSASAPASDAPPDAAFEP-APRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPearpPTPAAAAPAA 544
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 21751771 452 RAGGNQAA------------SQLEGKASALQPPASGPGSGSPLPQPWGDAQV-ILGSPARPPFSFQPPAEQTPRRA 514
Cdd:PRK07003 545 RAGGAAAAldvlrnagmrvsSDRGARAAAAAKPAAAPAAAPKPAAPRVAVQVpTPRARAATGDAPPNGAARAEQAA 620
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
337-514 |
1.28e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 41.51 E-value: 1.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21751771 337 GQAQALEEAGDLPEDPQKVPEADGQPAVQPAKEDLGPGDRGLHPRPQAVLSEQQNGLAVGGGEKAKGGPPPGNAAGDTGQ 416
Cdd:PRK07764 590 PAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGW 669
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21751771 417 PAEDSDHGGK--PPLPAEKPAPGPGLPPEPREQ-RDVERAGGNQAASQLEGKASALQPPASGPGSGS---PLPQPWGDAQ 490
Cdd:PRK07764 670 PAKAGGAAPAapPPAPAPAAPAAPAGAAPAQPApAPAATPPAGQADDPAAQPPQAAQGASAPSPAADdpvPLPPEPDDPP 749
|
170 180
....*....|....*....|....
gi 21751771 491 VILGSPARPPFSFQPPAEQTPRRA 514
Cdd:PRK07764 750 DPAGAPAQPPPPPAPAPAAAPAAA 773
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
376-514 |
1.43e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 41.51 E-value: 1.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21751771 376 RGLHPRPQAVlsEQQNGLAvGGGEKAKGGPPPGNAAGDTGQPAEDSDHGGKP--------PLPAEKPAPGPGLPPEPREQ 447
Cdd:PRK07764 372 RGLLARLERL--ERRLGVA-GGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAaapapaaaPQPAPAPAPAPAPPSPAGNA 448
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 21751771 448 RDVERAGGNQAASQLEGKASALQPPASGPGSGSPLPQPWGDAQVILGSPARPPFSFQPPAEQTPRRA 514
Cdd:PRK07764 449 PAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATLRER 515
|
|
| PHA03264 |
PHA03264 |
envelope glycoprotein D; Provisional |
412-511 |
1.69e-03 |
|
envelope glycoprotein D; Provisional
Pssm-ID: 223029 [Multi-domain] Cd Length: 416 Bit Score: 41.14 E-value: 1.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21751771 412 GDTGQPAEDSDHGGKPPLPAEKPAPGPglPPEPREQRDVERAGGNQAASQLEGKASALQPPASGP---GSGSPLPQPWG- 487
Cdd:PHA03264 251 GGVVPPYFEESKGYEPPPAPSGGSPAP--PGDDRPEAKPEPGPVEDGAPGRETGGEGEGPEPAGRdgaAGGEPKPGPPRp 328
|
90 100
....*....|....*....|....*.
gi 21751771 488 --DAQVILGSPARPPFSFQPPAEQTP 511
Cdd:PHA03264 329 apDADRPEGWPSLEAITFPPPTPATP 354
|
|
| PHA03169 |
PHA03169 |
hypothetical protein; Provisional |
277-483 |
1.96e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 223003 [Multi-domain] Cd Length: 413 Bit Score: 40.72 E-value: 1.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21751771 277 PHDKVVVDEGQDR-EVPEENKPPSRHAGGKAPGVQGqmapPLPDSEREKQEPEQGEVGKRPGQAQALEeagdlpedpqkv 355
Cdd:PHA03169 56 PQVRAVAEQGHRQtESDTETAEESRHGEKEERGQGG----PSGSGSESVGSPTPSPSGSAEELASGLS------------ 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21751771 356 PEADGQPAVQPAKEDLGPGDRGLHPRPQAVLSEQQNGLAVGGGEKAKGGPP----PGNAAGDTGQPAEDSDHGGKPPLPA 431
Cdd:PHA03169 120 PENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPShedsPEEPEPPTSEPEPDSPGPPQSETPT 199
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 21751771 432 EKPAPGPGlPPEPREQRDVERAGGNQAASQLEGKASALQPPASGPGSGSPLP 483
Cdd:PHA03169 200 SSPPPQSP-PDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPEREGPPFPGH 250
|
|
| PHA03321 |
PHA03321 |
tegument protein VP11/12; Provisional |
243-444 |
4.19e-03 |
|
tegument protein VP11/12; Provisional
Pssm-ID: 223041 [Multi-domain] Cd Length: 694 Bit Score: 39.94 E-value: 4.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21751771 243 REDgkEAPEEAQLDRPGQGIAVPVgEAHRHEPPVPHDKVVVDEGQDREVPEENKPPSRHAGGKAPGVQGQM---APPLPD 319
Cdd:PHA03321 437 RRD--NDPPPPPRARPGSTPACAR-RARAQRARDAGPEYVDPLGALRRLPAGAAPPPEPAAAPSPATYYTRmggGPPRLP 513
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21751771 320 SeREKQEPEQgevgkRPGQAQALEEAGDLPEDPQKVPEADGQPAvqpakEDLGPGDRGLHPRPQAVLSEQQNGLAVGGGE 399
Cdd:PHA03321 514 P-RNRATETL-----RPDWGPPAAAPPEQMEDPYLEPDDDRFDR-----RDGAAAAATSHPREAPAPDDDPIYEGVSDSE 582
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 21751771 400 ---------------------KAKGGPPPGNAAGDTGQPAEDSDHG------GKPPLPAEKPAPGPGLPPEP 444
Cdd:PHA03321 583 epvyeeiptprvyqnplprpmEGAGEPPDLDAPTSPWVEEENPIYGwgdsplFSPPPAARFPPPDPALSPEP 654
|
|
| PHA03378 |
PHA03378 |
EBNA-3B; Provisional |
301-514 |
7.36e-03 |
|
EBNA-3B; Provisional
Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 39.28 E-value: 7.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21751771 301 HAGGKAPGVQGQMAPPLPDSER---EKQEPEQGEVGKRPGQAQALEEAgDLPEDPQKVPEADGQPAVQPAKED---LGPG 374
Cdd:PHA03378 592 YAQTPWPVPHPSQTPEPPTTQShipETSAPRQWPMPLRPIPMRPLRMQ-PITFNVLVFPTPHQPPQVEITPYKptwTQIG 670
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21751771 375 DRGLHPRPQAVLSEQQNGLAVGGGEkakggpPPGNAAGDTGQPAedsdhggKPPLPAEKP--APGPGLPPEPREQRDVER 452
Cdd:PHA03378 671 HIPYQPSPTGANTMLPIQWAPGTMQ------PPPRAPTPMRPPA-------APPGRAQRPaaATGRARPPAAAPGRARPP 737
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 21751771 453 AGGNQAASQLEGKASALQPPASGPGSGSPLPQPWGDAqvilgSPARPPfSFQPPAEQTPRRA 514
Cdd:PHA03378 738 AAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGAP-----TPQPPP-QAPPAPQQRPRGA 793
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
262-451 |
8.72e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 38.81 E-value: 8.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21751771 262 IAVPVGEAHRHEPPVPHDKVVVDEGQDREVPEENKPPSRHAGGKAPG----VQGQMAPPLPDSEREKQEPEQGEVGKRP- 336
Cdd:PRK07764 588 VGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAapaeASAAPAPGVAAPEHHPKHVAVPDASDGGd 667
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21751771 337 GQAQALEEAGDLPEDPQKVPEADGQPAVQPAKEDLGPGDRGLHPRPQAVLSEQQNGLAVGGGEK---AKGGPPPGNAAGD 413
Cdd:PRK07764 668 GWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPspaADDPVPLPPEPDD 747
|
170 180 190
....*....|....*....|....*....|....*...
gi 21751771 414 TGQPAEDSDHGGKPPLPAEKPAPGPGLPPEPREQRDVE 451
Cdd:PRK07764 748 PPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEM 785
|
|
| |
