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Conserved domains on  [gi|28972163|dbj|BAC65535|]
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mKIAA0347 protein, partial [Mus musculus]

Protein Classification

PAS domain-containing methyl-accepting chemotaxis protein; PAS and ANTAR domain-containing protein( domain architecture ID 13751941)

PAS domain-containing methyl-accepting chemotaxis protein (MCP) is a bacterial receptor that mediates chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behavior| PAS and ANTAR (AmiR and NasR transcription antitermination regulators) domain-containing protein may bind RNA as well as bind ligands and/or act as sensors for light and oxygen in signal transduction

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Period_C pfam12114
Period protein 2/3C-terminal region; This domain is found in eukaryotes. This domain is ...
 1050-1220 8.53e-84

Period protein 2/3C-terminal region; This domain is found in eukaryotes. This domain is typically between 164 to 200 amino acids in length. This domain is found associated with pfam08447.


:

Pssm-ID: 463464  Cd Length: 171  Bit Score: 270.43  E-value: 8.53e-84
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163   1050 NSDAISTSSDLLNLLLGEDLCSATGSALSRSGASATSDSLGSSSLGFGTSQSGAGSSDTSHTSKYFGSIDSSENNHKAKM 1129
Cdd:pfam12114    1 NSDALSTSSDLLDLLLQEDGCSGTGSALSGSGSSATSGSLGSGSNGCDTSGSGTGSSDTSHSSKYFGSIDSSENNHKAKK 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163   1130 IPDTEESEQFIKYVLQDPIWLLMANTDDSIMMTYQLPSRDLQAVLKEDQEKLKLLQRSQPRFTEGQRRELREVHPWVHTG 1209
Cdd:pfam12114   81 TAEVGEEEHFIKCVLQDPIWLLMANTDDSVMMTYQIPSRDLETVLKEDREKLKAMQKMQPRFTEDQKGELAEVHPWIQKG 160

                          170
                   ....*....|.
gi 28972163   1210 GLPTAIDVTGC 1220
Cdd:pfam12114  161 GLPAALDLSEC 171
PAS_3 pfam08447
PAS fold; The PAS fold corresponds to the structural domain that has previously been defined ...
 354-438 1.60e-11

PAS fold; The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.


:

Pssm-ID: 430001 [Multi-domain]  Cd Length: 89  Bit Score: 61.59  E-value: 1.60e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163    354 VDERAVPLLGYLPQDLIETPVLVQ--LHPSDRPLMLAIHKKILqAGGQPFDySPIRFRTRNGEYITLDTSWSSFINpWSR 431
Cdd:pfam08447    4 WSPRFEEILGYTPEELLGKGESWLdlVHPDDRERVREALWEAL-KGGEPYS-GEYRIRRKDGEYRWVEARARPIRD-ENG 80


                   ....*..
gi 28972163    432 KISFIIG 438
Cdd:pfam08447   81 KPVRVIG 87
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 800-1048 8.27e-09

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 60.34  E-value: 8.27e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163   800 RVKTRDSSESTGSGGPVSHRPPLMGLNATAWSPSdtSQSSCPSAPFPTAVPAYPLPVFQ-APGIVSTPGTVVAP-----P 873
Cdd:PHA03247 2599 RAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPS--PAANEPDPHPPPTVPPPERPRDDpAPGRVSRPRRARRLgraaqA 2676

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163   874 AATHTGFTMPVVP--MGTQPEFAVQPLPFAAPlAPVMAFMLPSYPFPPATPNLPQAFlPSQPHFPAHP-TLASEITPASQ 950
Cdd:PHA03247 2677 SSPPQRPRRRAARptVGSLTSLADPPPPPPTP-EPAPHALVSATPLPPGPAAARQAS-PALPAAPAPPaVPAGPATPGGP 2754

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163   951 AEFPSRTSTLRQPCACPVTPPAGTVALGRASPPLFQSRGSSPLQLNLLQLEEAPEGSTGAAGTLGTTGTAASGLDCTSGT 1030
Cdd:PHA03247 2755 ARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSA 2834

                         250
                  ....*....|....*...
gi 28972163  1031 srdrQPKAPPTCNEPSDT 1048
Cdd:PHA03247 2835 ----QPTAPPPPPGPPPP 2848
PRK10263 super family cl35903
DNA translocase FtsK; Provisional
 455-992 5.84e-03

DNA translocase FtsK; Provisional


The actual alignment was detected with superfamily member PRK10263:

Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 41.22  E-value: 5.84e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163   455 SPCPEEKTPHPSVQELTEQIHRLLMQPVPHSGSSGYGSLGSNGSHEHLMSQTSSSDSNGQEESHRRRSGIFKTSGKIQTK 534
Cdd:PRK10263  374 APAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQ 453

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163   535 SHVSHESGGQKEASVAEMQSSPPAQVkAVTTIERDSSGASLPKAsfpeELAYKNQPPCSY------QQISCLDSVIRYLE 608
Cdd:PRK10263  454 STFAPQSTYQTEQTYQQPAAQEPLYQ-QPQPVEQQPVVEPEPVV----EETKPARPPLYYfeeveeKRAREREQLAAWYQ 528

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163   609 SCSEAAtlKRKCEFPANIPSRKATVSPGLHSGEAARPskVTSHTEvSAHLSSLTLPGKAESVVSLTSQCSYSSTIVH-VG 687
Cdd:PRK10263  529 PIPEPV--KEPEPIKSSLKAPSVAAVPPVEAAAAVSP--LASGVK-KATLATGAAATVAAPVFSLANSGGPRPQVKEgIG 603

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163   688 DKKPQPELETVedmasgPESLDGAAGGLsqeKGPLQKLGLTKEVLAAHTQREEQGFLQ-------RFREVSRLSALQAHc 760
Cdd:PRK10263  604 PQLPRPKRIRV------PTRRELASYGI---KLPSQRAAEEKAREAQRNQYDSGDQYNddeidamQQDELARQFAQTQQ- 673

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163   761 QNY---LQERSRAQASDRGLRNTSGLESSWKKTGKNRKlkskrvktrdSSESTGSGGPVShrpplmgLNATAWSPSDTSQ 837
Cdd:PRK10263  674 QRYgeqYQHDVPVNAEDADAAAEAELARQFAQTQQQRY----------SGEQPAGANPFS-------LDDFEFSPMKALL 736

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163   838 SSCPSAPFPTavpayplpvfqaPGIvstpgtvvappaathtgftMPVVPMGTQPEFAVQPLPFAAPLAPVMAFMLPSYPF 917
Cdd:PRK10263  737 DDGPHEPLFT------------PIV-------------------EPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPV 785

                         490       500       510       520       530       540       550
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 28972163   918 PPAtpnlPQAFLPSQPHFPAHPTLASE--ITPASQAEFPSRTSTLRQPCACPVTPPAGTVALGRASPPLFQSRGSSP 992
Cdd:PRK10263  786 APQ----PQYQQPQQPVAPQPQYQQPQqpVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTLLHPLLMRNGDSRP 858
 
Name Accession Description Interval E-value
Period_C pfam12114
Period protein 2/3C-terminal region; This domain is found in eukaryotes. This domain is ...
 1050-1220 8.53e-84

Period protein 2/3C-terminal region; This domain is found in eukaryotes. This domain is typically between 164 to 200 amino acids in length. This domain is found associated with pfam08447.


Pssm-ID: 463464  Cd Length: 171  Bit Score: 270.43  E-value: 8.53e-84
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163   1050 NSDAISTSSDLLNLLLGEDLCSATGSALSRSGASATSDSLGSSSLGFGTSQSGAGSSDTSHTSKYFGSIDSSENNHKAKM 1129
Cdd:pfam12114    1 NSDALSTSSDLLDLLLQEDGCSGTGSALSGSGSSATSGSLGSGSNGCDTSGSGTGSSDTSHSSKYFGSIDSSENNHKAKK 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163   1130 IPDTEESEQFIKYVLQDPIWLLMANTDDSIMMTYQLPSRDLQAVLKEDQEKLKLLQRSQPRFTEGQRRELREVHPWVHTG 1209
Cdd:pfam12114   81 TAEVGEEEHFIKCVLQDPIWLLMANTDDSVMMTYQIPSRDLETVLKEDREKLKAMQKMQPRFTEDQKGELAEVHPWIQKG 160

                          170
                   ....*....|.
gi 28972163   1210 GLPTAIDVTGC 1220
Cdd:pfam12114  161 GLPAALDLSEC 171
PAS_3 pfam08447
PAS fold; The PAS fold corresponds to the structural domain that has previously been defined ...
 354-438 1.60e-11

PAS fold; The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.


Pssm-ID: 430001 [Multi-domain]  Cd Length: 89  Bit Score: 61.59  E-value: 1.60e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163    354 VDERAVPLLGYLPQDLIETPVLVQ--LHPSDRPLMLAIHKKILqAGGQPFDySPIRFRTRNGEYITLDTSWSSFINpWSR 431
Cdd:pfam08447    4 WSPRFEEILGYTPEELLGKGESWLdlVHPDDRERVREALWEAL-KGGEPYS-GEYRIRRKDGEYRWVEARARPIRD-ENG 80


                   ....*..
gi 28972163    432 KISFIIG 438
Cdd:pfam08447   81 KPVRVIG 87
PAS cd00130
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising ...
 340-442 1.50e-10

PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction.


Pssm-ID: 238075 [Multi-domain]  Cd Length: 103  Bit Score: 59.18  E-value: 1.50e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163  340 IFTTTHTPNCLFqaVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQaGGQPFDYsPIRFRTRNGEYITLD 419
Cdd:cd00130    5 VIVLDLDGRILY--ANPAAEQLLGYSPEELIGKSLLDLIHPEDREELRERLENLLS-GGEPVTL-EVRLRRKDGSVIWVL 80

                         90       100
                 ....*....|....*....|...
gi 28972163  420 TSWSSFINPWSRKISFIIGRHKV 442
Cdd:cd00130   81 VSLTPIRDEGGEVIGLLGVVRDI 103
PHA03247 PHA03247
large tegument protein UL36; Provisional
 800-1048 8.27e-09

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 60.34  E-value: 8.27e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163   800 RVKTRDSSESTGSGGPVSHRPPLMGLNATAWSPSdtSQSSCPSAPFPTAVPAYPLPVFQ-APGIVSTPGTVVAP-----P 873
Cdd:PHA03247 2599 RAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPS--PAANEPDPHPPPTVPPPERPRDDpAPGRVSRPRRARRLgraaqA 2676

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163   874 AATHTGFTMPVVP--MGTQPEFAVQPLPFAAPlAPVMAFMLPSYPFPPATPNLPQAFlPSQPHFPAHP-TLASEITPASQ 950
Cdd:PHA03247 2677 SSPPQRPRRRAARptVGSLTSLADPPPPPPTP-EPAPHALVSATPLPPGPAAARQAS-PALPAAPAPPaVPAGPATPGGP 2754

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163   951 AEFPSRTSTLRQPCACPVTPPAGTVALGRASPPLFQSRGSSPLQLNLLQLEEAPEGSTGAAGTLGTTGTAASGLDCTSGT 1030
Cdd:PHA03247 2755 ARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSA 2834

                         250
                  ....*....|....*...
gi 28972163  1031 srdrQPKAPPTCNEPSDT 1048
Cdd:PHA03247 2835 ----QPTAPPPPPGPPPP 2848
PAS smart00091
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising ...
 340-395 1.47e-04

PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels.


Pssm-ID: 214512  Cd Length: 67  Bit Score: 41.23  E-value: 1.47e-04
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*.
gi 28972163     340 IFTTTHTPNCLFqaVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQ 395
Cdd:smart00091   14 IFVLDLDGRILY--ANPAAEELLGYSPEELIGKSLLELIHPEDRERVQEALQRLLS 67
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 810-1113 2.09e-04

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 45.68  E-value: 2.09e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163    810 TGSGGPVSHRPPLMGLNATAWSPSDTSQSSCPSAPFPTavPAYPLPVFQAPGIVSTPGTVVAPpaathtgftmpvVPMGT 889
Cdd:pfam05109  456 TNLTAPASTGPTVSTADVTSPTPAGTTSGASPVTPSPS--PRDNGTESKAPDMTSPTSAVTTP------------TPNAT 521

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163    890 QPEFAV-QPLPFAAplAPVMAFMLPSYPFPPATPNlpqaflpsqphfPAHPTLASeITPASQAEFPSRTSTLRQPCACPV 968
Cdd:pfam05109  522 SPTPAVtTPTPNAT--SPTLGKTSPTSAVTTPTPN------------ATSPTPAV-TTPTPNATIPTLGKTSPTSAVTTP 586

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163    969 TPPAGTVALGRASPPLFQSRGSSPLQLNLLQLEEAPEGSTGAAgtlgTTGTaaSGLDCTSGTSRDRQPKAPPTCNEPSDT 1048
Cdd:pfam05109  587 TPNATSPTVGETSPQANTTNHTLGGTSSTPVVTSPPKNATSAV----TTGQ--HNITSSSTSSMSLRPSSISETLSPSTS 660

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 28972163   1049 QNSDAISTSSDLLNLLLGEDLCSATGSALSRSGASATSDSLGSsslgfGTSQSGAGSSDTSHTSK 1113
Cdd:pfam05109  661 DNSTSHMPLLTSAHPTGGENITQVTPASTSTHHVSTSSPAPRP-----GTTSQASGPGNSSTSTK 720
PAS COG2202
PAS domain [Signal transduction mechanisms];
344-438 1.53e-03

PAS domain [Signal transduction mechanisms];


Pssm-ID: 441804 [Multi-domain]  Cd Length: 258  Bit Score: 41.93  E-value: 1.53e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163  344 THTPNCLFQAVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQAGGQPFDyspIRFRTRNGEYITLDTSWS 423
Cdd:COG2202  152 VLDLDGRILYVNPAAEELLGYSPEELLGKSLLDLLHPEDRERLLELLRRLLEGGRESYE---LELRLKDGDGRWVWVEAS 228

                         90
                 ....*....|....*
gi 28972163  424 SFINPWSRKISFIIG 438
Cdd:COG2202  229 AVPLRDGGEVIGVLG 243
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 455-992 5.84e-03

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 41.22  E-value: 5.84e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163   455 SPCPEEKTPHPSVQELTEQIHRLLMQPVPHSGSSGYGSLGSNGSHEHLMSQTSSSDSNGQEESHRRRSGIFKTSGKIQTK 534
Cdd:PRK10263  374 APAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQ 453

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163   535 SHVSHESGGQKEASVAEMQSSPPAQVkAVTTIERDSSGASLPKAsfpeELAYKNQPPCSY------QQISCLDSVIRYLE 608
Cdd:PRK10263  454 STFAPQSTYQTEQTYQQPAAQEPLYQ-QPQPVEQQPVVEPEPVV----EETKPARPPLYYfeeveeKRAREREQLAAWYQ 528

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163   609 SCSEAAtlKRKCEFPANIPSRKATVSPGLHSGEAARPskVTSHTEvSAHLSSLTLPGKAESVVSLTSQCSYSSTIVH-VG 687
Cdd:PRK10263  529 PIPEPV--KEPEPIKSSLKAPSVAAVPPVEAAAAVSP--LASGVK-KATLATGAAATVAAPVFSLANSGGPRPQVKEgIG 603

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163   688 DKKPQPELETVedmasgPESLDGAAGGLsqeKGPLQKLGLTKEVLAAHTQREEQGFLQ-------RFREVSRLSALQAHc 760
Cdd:PRK10263  604 PQLPRPKRIRV------PTRRELASYGI---KLPSQRAAEEKAREAQRNQYDSGDQYNddeidamQQDELARQFAQTQQ- 673

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163   761 QNY---LQERSRAQASDRGLRNTSGLESSWKKTGKNRKlkskrvktrdSSESTGSGGPVShrpplmgLNATAWSPSDTSQ 837
Cdd:PRK10263  674 QRYgeqYQHDVPVNAEDADAAAEAELARQFAQTQQQRY----------SGEQPAGANPFS-------LDDFEFSPMKALL 736

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163   838 SSCPSAPFPTavpayplpvfqaPGIvstpgtvvappaathtgftMPVVPMGTQPEFAVQPLPFAAPLAPVMAFMLPSYPF 917
Cdd:PRK10263  737 DDGPHEPLFT------------PIV-------------------EPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPV 785

                         490       500       510       520       530       540       550
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 28972163   918 PPAtpnlPQAFLPSQPHFPAHPTLASE--ITPASQAEFPSRTSTLRQPCACPVTPPAGTVALGRASPPLFQSRGSSP 992
Cdd:PRK10263  786 APQ----PQYQQPQQPVAPQPQYQQPQqpVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTLLHPLLMRNGDSRP 858
 
Name Accession Description Interval E-value
Period_C pfam12114
Period protein 2/3C-terminal region; This domain is found in eukaryotes. This domain is ...
 1050-1220 8.53e-84

Period protein 2/3C-terminal region; This domain is found in eukaryotes. This domain is typically between 164 to 200 amino acids in length. This domain is found associated with pfam08447.


Pssm-ID: 463464  Cd Length: 171  Bit Score: 270.43  E-value: 8.53e-84
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163   1050 NSDAISTSSDLLNLLLGEDLCSATGSALSRSGASATSDSLGSSSLGFGTSQSGAGSSDTSHTSKYFGSIDSSENNHKAKM 1129
Cdd:pfam12114    1 NSDALSTSSDLLDLLLQEDGCSGTGSALSGSGSSATSGSLGSGSNGCDTSGSGTGSSDTSHSSKYFGSIDSSENNHKAKK 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163   1130 IPDTEESEQFIKYVLQDPIWLLMANTDDSIMMTYQLPSRDLQAVLKEDQEKLKLLQRSQPRFTEGQRRELREVHPWVHTG 1209
Cdd:pfam12114   81 TAEVGEEEHFIKCVLQDPIWLLMANTDDSVMMTYQIPSRDLETVLKEDREKLKAMQKMQPRFTEDQKGELAEVHPWIQKG 160

                          170
                   ....*....|.
gi 28972163   1210 GLPTAIDVTGC 1220
Cdd:pfam12114  161 GLPAALDLSEC 171
PAS_3 pfam08447
PAS fold; The PAS fold corresponds to the structural domain that has previously been defined ...
 354-438 1.60e-11

PAS fold; The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.


Pssm-ID: 430001 [Multi-domain]  Cd Length: 89  Bit Score: 61.59  E-value: 1.60e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163    354 VDERAVPLLGYLPQDLIETPVLVQ--LHPSDRPLMLAIHKKILqAGGQPFDySPIRFRTRNGEYITLDTSWSSFINpWSR 431
Cdd:pfam08447    4 WSPRFEEILGYTPEELLGKGESWLdlVHPDDRERVREALWEAL-KGGEPYS-GEYRIRRKDGEYRWVEARARPIRD-ENG 80


                   ....*..
gi 28972163    432 KISFIIG 438
Cdd:pfam08447   81 KPVRVIG 87
PAS cd00130
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising ...
 340-442 1.50e-10

PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction.


Pssm-ID: 238075 [Multi-domain]  Cd Length: 103  Bit Score: 59.18  E-value: 1.50e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163  340 IFTTTHTPNCLFqaVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQaGGQPFDYsPIRFRTRNGEYITLD 419
Cdd:cd00130    5 VIVLDLDGRILY--ANPAAEQLLGYSPEELIGKSLLDLIHPEDREELRERLENLLS-GGEPVTL-EVRLRRKDGSVIWVL 80

                         90       100
                 ....*....|....*....|...
gi 28972163  420 TSWSSFINPWSRKISFIIGRHKV 442
Cdd:cd00130   81 VSLTPIRDEGGEVIGLLGVVRDI 103
PHA03247 PHA03247
large tegument protein UL36; Provisional
 800-1048 8.27e-09

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 60.34  E-value: 8.27e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163   800 RVKTRDSSESTGSGGPVSHRPPLMGLNATAWSPSdtSQSSCPSAPFPTAVPAYPLPVFQ-APGIVSTPGTVVAP-----P 873
Cdd:PHA03247 2599 RAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPS--PAANEPDPHPPPTVPPPERPRDDpAPGRVSRPRRARRLgraaqA 2676

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163   874 AATHTGFTMPVVP--MGTQPEFAVQPLPFAAPlAPVMAFMLPSYPFPPATPNLPQAFlPSQPHFPAHP-TLASEITPASQ 950
Cdd:PHA03247 2677 SSPPQRPRRRAARptVGSLTSLADPPPPPPTP-EPAPHALVSATPLPPGPAAARQAS-PALPAAPAPPaVPAGPATPGGP 2754

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163   951 AEFPSRTSTLRQPCACPVTPPAGTVALGRASPPLFQSRGSSPLQLNLLQLEEAPEGSTGAAGTLGTTGTAASGLDCTSGT 1030
Cdd:PHA03247 2755 ARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSA 2834

                         250
                  ....*....|....*...
gi 28972163  1031 srdrQPKAPPTCNEPSDT 1048
Cdd:PHA03247 2835 ----QPTAPPPPPGPPPP 2848
PAS_11 pfam14598
PAS domain; This family includes the PAS-B domain of NCOA1 (Nuclear receptor coactivator 1), ...
 341-442 1.00e-08

PAS domain; This family includes the PAS-B domain of NCOA1 (Nuclear receptor coactivator 1), which binds to an LXXLL motif in the C-terminal region of STAT6 (Signal transducer and activator of transcription 6).


Pssm-ID: 464214 [Multi-domain]  Cd Length: 110  Bit Score: 54.22  E-value: 1.00e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163    341 FTTTHTPNCLFQAVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQAGGQPFdySPI-RFRTRNGEYITLD 419
Cdd:pfam14598    4 FTTRHDIDGKIISCDTRAPFSLGYEKDELVGRSIYDLVHPQDLRTAKSHLREIIQTRGRAT--SPSyRLRLRDGDFLSVH 81

                           90       100
                   ....*....|....*....|...
gi 28972163    420 TSWSSFINPWSRKISFIIGRHKV 442
Cdd:pfam14598   82 TKSKLFLNQNSNQQPFIMCTHTI 104
PHA03247 PHA03247
large tegument protein UL36; Provisional
 809-1055 1.10e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 56.87  E-value: 1.10e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163   809 STGSGGPVSHRPPlmGLNATAWSPSDTSQSSCPSAPFPTAVPAYPLPVFQAPGIVSTPGTVVAPPAAThtgftMPVVPmG 888
Cdd:PHA03247 2769 PAPPAAPAAGPPR--RLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSA-----QPTAP-P 2840

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163   889 TQPEFAVQPLPFAAPLAPVMAFML--PSYPFP--PATPNLP----------------QAFLPSQPHFPAHPTLASEITPA 948
Cdd:PHA03247 2841 PPPGPPPPSLPLGGSVAPGGDVRRrpPSRSPAakPAAPARPpvrrlarpavsrstesFALPPDQPERPPQPQAPPPPQPQ 2920

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163   949 SQAEFPSRTSTLRQPCACPVTPPA---GTVALGRASP--PLFQSRGSSPLQLN---LLQLEEAPEGSTGAAGTLGTTGTA 1020
Cdd:PHA03247 2921 PQPPPPPQPQPPPPPPPRPQPPLApttDPAGAGEPSGavPQPWLGALVPGRVAvprFRVPQPAPSREAPASSTPPLTGHS 3000

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 28972163  1021 ASGLDC-TSGTSRDRQPKAPP-----TCNEPSDTQNSDAIS 1055
Cdd:PHA03247 3001 LSRVSSwASSLALHEETDPPPvslkqTLWPPDDTEDSDADS 3041
PHA03247 PHA03247
large tegument protein UL36; Provisional
 814-1005 1.07e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 53.40  E-value: 1.07e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163   814 GPVSHRPPLMGLNATAWSPSDTSQSSCPSAPFPTAVPAYPL-PVFQAP--GIVSTPGTVVAPPAATHTGFTMPVVPMGTQ 890
Cdd:PHA03247 2724 GPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAgPPAPAPpaAPAAGPPRRLTRPAVASLSESRESLPSPWD 2803

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163   891 PefAVQPLPFAAPLAPVMAFMLPSYPFPPATPNLPQAflPSQPHFPAHPTLASEITPASQAEFpSRTSTLRQPCACPVTP 970
Cdd:PHA03247 2804 P--ADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTA--PPPPPGPPPPSLPLGGSVAPGGDV-RRRPPSRSPAAKPAAP 2878

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 28972163   971 PAGTVAlGRASPPLFQSRGSSPLQLNLLQLEEAPE 1005
Cdd:PHA03247 2879 ARPPVR-RLARPAVSRSTESFALPPDQPERPPQPQ 2912
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
815-992 1.52e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 49.49  E-value: 1.52e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163   815 PVSHRPPLMGLNATAWSPSDTSQSSCPSAPFPTAVPAYPLPVFQAPGIVSTPGTVVAPPAATHTGFTMPVVPMGTQPEFA 894
Cdd:PRK12323  397 PAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAA 476

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163   895 VQPLPFAAPLAPVMAFMLPSYPFPPATPNLPQAFLPSQPHFPAHPTLASEITPASQAEFPSRTSTLRQPCACPVTPPAGT 974
Cdd:PRK12323  477 AAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAA 556

                         170
                  ....*....|....*...
gi 28972163   975 VALGRASPPLFQSRGSSP 992
Cdd:PRK12323  557 TEPVVAPRPPRASASGLP 574
PAS smart00091
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising ...
 340-395 1.47e-04

PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels.


Pssm-ID: 214512  Cd Length: 67  Bit Score: 41.23  E-value: 1.47e-04
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*.
gi 28972163     340 IFTTTHTPNCLFqaVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQ 395
Cdd:smart00091   14 IFVLDLDGRILY--ANPAAEELLGYSPEELIGKSLLELIHPEDRERVQEALQRLLS 67
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 827-983 1.60e-04

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 46.23  E-value: 1.60e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163   827 ATAWSPSDTSQSSCPSAPFPTAVPAYPLPVFQ-APGiVSTPGTVVAPPAATHTGFTMPVVPMGTQPEFAVQPLPFAAPLA 905
Cdd:PRK10263  330 TQSWAAPVEPVTQTPPVASVDVPPAQPTVAWQpVPG-PQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYY 408

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 28972163   906 PVMAFMLPSYPFPPATPNLPQAFLPSQPHFPAHPTLASEITPASQAEF-PSRTSTLRQPCACPVTPPAGTVALGRASPP 983
Cdd:PRK10263  409 APAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFaPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQ 487
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 810-1113 2.09e-04

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 45.68  E-value: 2.09e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163    810 TGSGGPVSHRPPLMGLNATAWSPSDTSQSSCPSAPFPTavPAYPLPVFQAPGIVSTPGTVVAPpaathtgftmpvVPMGT 889
Cdd:pfam05109  456 TNLTAPASTGPTVSTADVTSPTPAGTTSGASPVTPSPS--PRDNGTESKAPDMTSPTSAVTTP------------TPNAT 521

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163    890 QPEFAV-QPLPFAAplAPVMAFMLPSYPFPPATPNlpqaflpsqphfPAHPTLASeITPASQAEFPSRTSTLRQPCACPV 968
Cdd:pfam05109  522 SPTPAVtTPTPNAT--SPTLGKTSPTSAVTTPTPN------------ATSPTPAV-TTPTPNATIPTLGKTSPTSAVTTP 586

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163    969 TPPAGTVALGRASPPLFQSRGSSPLQLNLLQLEEAPEGSTGAAgtlgTTGTaaSGLDCTSGTSRDRQPKAPPTCNEPSDT 1048
Cdd:pfam05109  587 TPNATSPTVGETSPQANTTNHTLGGTSSTPVVTSPPKNATSAV----TTGQ--HNITSSSTSSMSLRPSSISETLSPSTS 660

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 28972163   1049 QNSDAISTSSDLLNLLLGEDLCSATGSALSRSGASATSDSLGSsslgfGTSQSGAGSSDTSHTSK 1113
Cdd:pfam05109  661 DNSTSHMPLLTSAHPTGGENITQVTPASTSTHHVSTSSPAPRP-----GTTSQASGPGNSSTSTK 720
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
836-1039 5.01e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 44.48  E-value: 5.01e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163   836 SQSSCPSAPFPTAVPayplPVFQAPGIVSTPGTVVAPPAATHTGFTMPVVPMGTQPEFAVQPLPFAAPLAPVMAFMLPSY 915
Cdd:PRK12323  366 GQSGGGAGPATAAAA----PVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASA 441

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163   916 PFPPATPNLPQAFLPSQPHFPAHPTLASEITPASQAEFPSRTSTLRQPCACP-VTPPAGTVALGRASPPLFQSRGSSPLQ 994
Cdd:PRK12323  442 RGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADdDPPPWEELPPEFASPAPAQPDAAPAGW 521

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 28972163   995 LNLLQLEEAPEGSTGAAGTLGTTGTAASGLDCTSGTSRDRQPKAP 1039
Cdd:PRK12323  522 VAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPP 566
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
 807-1022 1.29e-03

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 43.22  E-value: 1.29e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163    807 SESTGSGGPVSHRPPLMGLNATAWSPSDTSQSSCPSAPF-------PTAVPAYPLPVFQA---------PGIVSTPGTVV 870
Cdd:pfam03154  312 GPSPAAPGQSQQRIHTPPSQSQLQSQQPPREQPLPPAPLsmphikpPPTTPIPQLPNPQShkhpphlsgPSPFQMNSNLP 391

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163    871 APPA-------ATHTGFTMPVVPMGTQPEfaVQPLPfAAPLAPVMAFMLPSYPfPPATPNLPQAFL---PSQPHFPAHPT 940
Cdd:pfam03154  392 PPPAlkplsslSTHHPPSAHPPPLQLMPQ--SQQLP-PPPAQPPVLTQSQSLP-PPAASHPPTSGLhqvPSQSPFPQHPF 467

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163    941 LAS---EITPAS--QAEFPSRTSTLRQPCACPVTPPAGTVALGRASPPLFQSRGSSPLQLNLLQLEEAPEGSTGAAGTLG 1015
Cdd:pfam03154  468 VPGgppPITPPSgpPTSTSSAMPGIQPPSSASVSSSGPVPAAVSCPLPPVQIKEEALDEAEEPESPPPPPRSPSPEPTVV 547


                   ....*..
gi 28972163   1016 TTGTAAS 1022
Cdd:pfam03154  548 NTPSHAS 554
PAS COG2202
PAS domain [Signal transduction mechanisms];
344-438 1.53e-03

PAS domain [Signal transduction mechanisms];


Pssm-ID: 441804 [Multi-domain]  Cd Length: 258  Bit Score: 41.93  E-value: 1.53e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163  344 THTPNCLFQAVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQAGGQPFDyspIRFRTRNGEYITLDTSWS 423
Cdd:COG2202  152 VLDLDGRILYVNPAAEELLGYSPEELLGKSLLDLLHPEDRERLLELLRRLLEGGRESYE---LELRLKDGDGRWVWVEAS 228

                         90
                 ....*....|....*
gi 28972163  424 SFINPWSRKISFIIG 438
Cdd:COG2202  229 AVPLRDGGEVIGVLG 243
PHA02682 PHA02682
ORF080 virion core protein; Provisional
 841-956 3.38e-03

ORF080 virion core protein; Provisional


Pssm-ID: 177464 [Multi-domain]  Cd Length: 280  Bit Score: 41.00  E-value: 3.38e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163   841 PSAPFPTAVPAYPLPVFQAPG-IVSTPGTVVA-PPAATHTGFTMPVVPMGTQPEFAVQPLPFAAPLAPVmafmLPSY-PF 917
Cdd:PHA02682   84 PSPACAAPAPACPACAPAAPApAVTCPAPAPAcPPATAPTCPPPAVCPAPARPAPACPPSTRQCPPAPP----LPTPkPA 159

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 28972163   918 PPATPNLPQAFLPSqPHFPAHPTLASEITPASQAEFPSR 956
Cdd:PHA02682  160 PAAKPIFLHNQLPP-PDYPAASCPTIETAPAASPVLEPR 197
PHA03378 PHA03378
EBNA-3B; Provisional
 805-1045 4.09e-03

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 41.59  E-value: 4.09e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163   805 DSSESTGSGGPVSHRPPLMGLNATAWSPsdtsQSSCPSAPFPTAVPAY---PLPVFQAPGIVSTPGTVVAPPA-ATHTGF 880
Cdd:PHA03378  549 ESDEPASTEPVHDQLLPAPGLGPLQIQP----LTSPTTSQLASSAPSYaqtPWPVPHPSQTPEPPTTQSHIPEtSAPRQW 624

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163   881 TMPVVPMGTQPeFAVQPLPFAAPLAPVmafmlPSYPfPPATPNLPQAFLPSQPHFPAHPTLASEIT-------PASQAEF 953
Cdd:PHA03378  625 PMPLRPIPMRP-LRMQPITFNVLVFPT-----PHQP-PQVEITPYKPTWTQIGHIPYQPSPTGANTmlpiqwaPGTMQPP 697

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163   954 PSRTSTLRQPCACPVT--PPAGTV--------ALGRASPPLFQSRGSSPLQLNLLQLEEAPEGSTGAAGTLGTTGTAASG 1023
Cdd:PHA03378  698 PRAPTPMRPPAAPPGRaqRPAAATgrarppaaAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQ 777

                         250       260
                  ....*....|....*....|..
gi 28972163  1024 LDCTSGTSRDRQPKAPPTCNEP 1045
Cdd:PHA03378  778 PPPQAPPAPQQRPRGAPTPQPP 799
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 455-992 5.84e-03

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 41.22  E-value: 5.84e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163   455 SPCPEEKTPHPSVQELTEQIHRLLMQPVPHSGSSGYGSLGSNGSHEHLMSQTSSSDSNGQEESHRRRSGIFKTSGKIQTK 534
Cdd:PRK10263  374 APAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQ 453

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163   535 SHVSHESGGQKEASVAEMQSSPPAQVkAVTTIERDSSGASLPKAsfpeELAYKNQPPCSY------QQISCLDSVIRYLE 608
Cdd:PRK10263  454 STFAPQSTYQTEQTYQQPAAQEPLYQ-QPQPVEQQPVVEPEPVV----EETKPARPPLYYfeeveeKRAREREQLAAWYQ 528

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163   609 SCSEAAtlKRKCEFPANIPSRKATVSPGLHSGEAARPskVTSHTEvSAHLSSLTLPGKAESVVSLTSQCSYSSTIVH-VG 687
Cdd:PRK10263  529 PIPEPV--KEPEPIKSSLKAPSVAAVPPVEAAAAVSP--LASGVK-KATLATGAAATVAAPVFSLANSGGPRPQVKEgIG 603

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163   688 DKKPQPELETVedmasgPESLDGAAGGLsqeKGPLQKLGLTKEVLAAHTQREEQGFLQ-------RFREVSRLSALQAHc 760
Cdd:PRK10263  604 PQLPRPKRIRV------PTRRELASYGI---KLPSQRAAEEKAREAQRNQYDSGDQYNddeidamQQDELARQFAQTQQ- 673

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163   761 QNY---LQERSRAQASDRGLRNTSGLESSWKKTGKNRKlkskrvktrdSSESTGSGGPVShrpplmgLNATAWSPSDTSQ 837
Cdd:PRK10263  674 QRYgeqYQHDVPVNAEDADAAAEAELARQFAQTQQQRY----------SGEQPAGANPFS-------LDDFEFSPMKALL 736

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28972163   838 SSCPSAPFPTavpayplpvfqaPGIvstpgtvvappaathtgftMPVVPMGTQPEFAVQPLPFAAPLAPVMAFMLPSYPF 917
Cdd:PRK10263  737 DDGPHEPLFT------------PIV-------------------EPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPV 785

                         490       500       510       520       530       540       550
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 28972163   918 PPAtpnlPQAFLPSQPHFPAHPTLASE--ITPASQAEFPSRTSTLRQPCACPVTPPAGTVALGRASPPLFQSRGSSP 992
Cdd:PRK10263  786 APQ----PQYQQPQQPVAPQPQYQQPQqpVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTLLHPLLMRNGDSRP 858
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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