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Conserved domains on  [gi|50508283|dbj|BAD32132|]
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putative thylakoid lumen 15.0-kDa protein [Oryza sativa Japonica Group]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TPM_phosphatase super family cl46441
TPM domain; This family was first named TPM domain after its founding proteins: TLP18.3, Psb32 ...
 24-105 1.92e-03

TPM domain; This family was first named TPM domain after its founding proteins: TLP18.3, Psb32 and MOLO-1. In Arabidopsis, this domain is called the thylakoid acid phosphatase -TAP - domain and has a Rossmann-like fold. In plants, the family resides in the thylakoid lumen attached to the outer membrane of the chloroplast/plastid. It is active in the photosystem II.


The actual alignment was detected with superfamily member pfam04536:

Pssm-ID: 480781  Cd Length: 125  Bit Score: 35.61  E-value: 1.92e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50508283    24 VFSP-QENRLRQEIEDLEKDTGYKLRVLAQnyPDTPGLAIKDF-------WQV-----DDQTIVFVAdpTFGNIINFNVG 90
Cdd:pfam04536   7 LLSDeEEAELEQKLAALEKKTGVQIVVVTV--PSLDGEDIEDYaddlfdkWGIgqkgkDNGVLLLVA--MDDRKVRIEVG 82

                          90
                  ....*....|....*
gi 50508283    91 ALVDLDIPRSFWSRV 105
Cdd:pfam04536  83 YGLEGALTDALADRI 97
 
Name Accession Description Interval E-value
TPM_phosphatase pfam04536
TPM domain; This family was first named TPM domain after its founding proteins: TLP18.3, Psb32 ...
 24-105 1.92e-03

TPM domain; This family was first named TPM domain after its founding proteins: TLP18.3, Psb32 and MOLO-1. In Arabidopsis, this domain is called the thylakoid acid phosphatase -TAP - domain and has a Rossmann-like fold. In plants, the family resides in the thylakoid lumen attached to the outer membrane of the chloroplast/plastid. It is active in the photosystem II.


Pssm-ID: 461345  Cd Length: 125  Bit Score: 35.61  E-value: 1.92e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50508283    24 VFSP-QENRLRQEIEDLEKDTGYKLRVLAQnyPDTPGLAIKDF-------WQV-----DDQTIVFVAdpTFGNIINFNVG 90
Cdd:pfam04536   7 LLSDeEEAELEQKLAALEKKTGVQIVVVTV--PSLDGEDIEDYaddlfdkWGIgqkgkDNGVLLLVA--MDDRKVRIEVG 82

                          90
                  ....*....|....*
gi 50508283    91 ALVDLDIPRSFWSRV 105
Cdd:pfam04536  83 YGLEGALTDALADRI 97
YgcG COG1512
Uncharacterized membrane protein YgcG, contains a TPM-fold domain [Function unknown];
24-77 2.76e-03

Uncharacterized membrane protein YgcG, contains a TPM-fold domain [Function unknown];


Pssm-ID: 441121 [Multi-domain]  Cd Length: 259  Bit Score: 35.90  E-value: 2.76e-03
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 50508283  24 VFSP-QENRLRQEIEDLEKDTGYKLRVLAqnYPDTPGLAIKDF-------WQV-----DDQTIVFVA 77
Cdd:COG1512  39 LLSPaEEAALEQKLAALEDKTGAQIVVVT--VPSLGGEDIEDYatrlfrkWGIgqkgkDNGVLLLVA 103
 
Name Accession Description Interval E-value
TPM_phosphatase pfam04536
TPM domain; This family was first named TPM domain after its founding proteins: TLP18.3, Psb32 ...
 24-105 1.92e-03

TPM domain; This family was first named TPM domain after its founding proteins: TLP18.3, Psb32 and MOLO-1. In Arabidopsis, this domain is called the thylakoid acid phosphatase -TAP - domain and has a Rossmann-like fold. In plants, the family resides in the thylakoid lumen attached to the outer membrane of the chloroplast/plastid. It is active in the photosystem II.


Pssm-ID: 461345  Cd Length: 125  Bit Score: 35.61  E-value: 1.92e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50508283    24 VFSP-QENRLRQEIEDLEKDTGYKLRVLAQnyPDTPGLAIKDF-------WQV-----DDQTIVFVAdpTFGNIINFNVG 90
Cdd:pfam04536   7 LLSDeEEAELEQKLAALEKKTGVQIVVVTV--PSLDGEDIEDYaddlfdkWGIgqkgkDNGVLLLVA--MDDRKVRIEVG 82

                          90
                  ....*....|....*
gi 50508283    91 ALVDLDIPRSFWSRV 105
Cdd:pfam04536  83 YGLEGALTDALADRI 97
YgcG COG1512
Uncharacterized membrane protein YgcG, contains a TPM-fold domain [Function unknown];
24-77 2.76e-03

Uncharacterized membrane protein YgcG, contains a TPM-fold domain [Function unknown];


Pssm-ID: 441121 [Multi-domain]  Cd Length: 259  Bit Score: 35.90  E-value: 2.76e-03
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 50508283  24 VFSP-QENRLRQEIEDLEKDTGYKLRVLAqnYPDTPGLAIKDF-------WQV-----DDQTIVFVA 77
Cdd:COG1512  39 LLSPaEEAALEQKLAALEDKTGAQIVVVT--VPSLGGEDIEDYatrlfrkWGIgqkgkDNGVLLLVA 103
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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