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Conserved domains on  [gi|55296486|dbj|BAD68682|]
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homeodomain leucine zipper protein [Oryza sativa Japonica Group]

Protein Classification

homeodomain and HALZ domain-containing protein( domain architecture ID 11078967)

homeodomain and HALZ domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HALZ super family cl46918
homeobox associated leucin zipper;
170-204 4.59e-14

homeobox associated leucin zipper;


The actual alignment was detected with superfamily member smart00340:

Pssm-ID: 128634  Cd Length: 44  Bit Score: 65.17  E-value: 4.59e-14
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 55296486    170 KQTEVDCEYLKRWCERLADENKRLEKELADLRALK 204
Cdd:smart00340   1 KQTEVDCELLKRCCESLTEENRRLQKEVQELRALK 35
Homeodomain pfam00046
Homeodomain;
114-168 1.62e-13

Homeodomain;


:

Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 64.06  E-value: 1.62e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 55296486   114 RKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTK 168
Cdd:pfam00046   2 RKRTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWK 56
 
Name Accession Description Interval E-value
HALZ smart00340
homeobox associated leucin zipper;
170-204 4.59e-14

homeobox associated leucin zipper;


Pssm-ID: 128634  Cd Length: 44  Bit Score: 65.17  E-value: 4.59e-14
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 55296486    170 KQTEVDCEYLKRWCERLADENKRLEKELADLRALK 204
Cdd:smart00340   1 KQTEVDCELLKRCCESLTEENRRLQKEVQELRALK 35
Homeodomain pfam00046
Homeodomain;
114-168 1.62e-13

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 64.06  E-value: 1.62e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 55296486   114 RKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTK 168
Cdd:pfam00046   2 RKRTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWK 56
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 114-171 1.51e-12

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 61.49  E-value: 1.51e-12
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 55296486 114 RKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQ 171
Cdd:cd00086   2 RKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 114-168 1.66e-12

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 61.11  E-value: 1.66e-12
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 55296486    114 RKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTK 168
Cdd:smart00389   3 RKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
COG5576 COG5576
Homeodomain-containing transcription factor [Transcription];
114-188 5.62e-10

Homeodomain-containing transcription factor [Transcription];


Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 57.06  E-value: 5.62e-10
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 55296486 114 RKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCERLAD 188
Cdd:COG5576  53 SKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKRSGKVEQRPGEEEADLAK 127
HALZ pfam02183
Homeobox associated leucine zipper;
170-204 2.35e-06

Homeobox associated leucine zipper;


Pssm-ID: 460477 [Multi-domain]  Cd Length: 42  Bit Score: 43.66  E-value: 2.35e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 55296486   170 KQTEVDCEYLKRWCERLA-------DENKRLEKELADLRALK 204
Cdd:pfam02183   1 KQLERDYDVLKASYDALKsdfdslkKENQKLQAELQELKEKL 42
 
Name Accession Description Interval E-value
HALZ smart00340
homeobox associated leucin zipper;
170-204 4.59e-14

homeobox associated leucin zipper;


Pssm-ID: 128634  Cd Length: 44  Bit Score: 65.17  E-value: 4.59e-14
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 55296486    170 KQTEVDCEYLKRWCERLADENKRLEKELADLRALK 204
Cdd:smart00340   1 KQTEVDCELLKRCCESLTEENRRLQKEVQELRALK 35
Homeodomain pfam00046
Homeodomain;
114-168 1.62e-13

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 64.06  E-value: 1.62e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 55296486   114 RKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTK 168
Cdd:pfam00046   2 RKRTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWK 56
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 114-171 1.51e-12

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 61.49  E-value: 1.51e-12
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 55296486 114 RKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQ 171
Cdd:cd00086   2 RKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 114-168 1.66e-12

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 61.11  E-value: 1.66e-12
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 55296486    114 RKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTK 168
Cdd:smart00389   3 RKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
COG5576 COG5576
Homeodomain-containing transcription factor [Transcription];
114-188 5.62e-10

Homeodomain-containing transcription factor [Transcription];


Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 57.06  E-value: 5.62e-10
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 55296486 114 RKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCERLAD 188
Cdd:COG5576  53 SKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKRSGKVEQRPGEEEADLAK 127
HALZ pfam02183
Homeobox associated leucine zipper;
170-204 2.35e-06

Homeobox associated leucine zipper;


Pssm-ID: 460477 [Multi-domain]  Cd Length: 42  Bit Score: 43.66  E-value: 2.35e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 55296486   170 KQTEVDCEYLKRWCERLA-------DENKRLEKELADLRALK 204
Cdd:pfam02183   1 KQLERDYDVLKASYDALKsdfdslkKENQKLQAELQELKEKL 42
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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