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Conserved domains on  [gi|189068262|dbj|BAG38359|]
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NADH dehydrogenase subunit 5, partial (mitochondrion) [Takifugu sp. O1]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND5 super family cl33354
NADH dehydrogenase subunit 5; Provisional
 2-174 5.50e-126

NADH dehydrogenase subunit 5; Provisional


The actual alignment was detected with superfamily member MTH00137:

Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 366.85  E-value: 5.50e-126
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189068262   2 HSTPLIMTSTLIIIFALLIYPVLMTFSPKPQNPNWALIQVKTAVKYAFLVSLLPLCLHLNEGTESIITNLNWMNTLTFDI 81
Cdd:MTH00137   1 HPTTLIMTSSLILIFALLIYPLLTTLSPNPQKPNWALTHVKTAVKTAFFVSLLPLFLFLNQGAETIITNWNWMNTLTFDI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189068262  82 NISLKFDSYSIIFTPVALYVTWSILEFASWYMHSDPFMNRFFKYLLIFLIAMIILVTANNMFQLFIGWEGVGIMSFLLIG 161
Cdd:MTH00137  81 NISFKFDHYSIIFTPIALYVTWSILEFASWYMHADPNMNRFFKYLLIFLIAMIILVTANNMFQLFIGWEGVGIMSFLLIG 160

                        170
                 ....*....|...
gi 189068262 162 WWYARADANTAAL 174
Cdd:MTH00137 161 WWYGRADANTAAL 173
 
Name Accession Description Interval E-value
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
 2-174 5.50e-126

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 366.85  E-value: 5.50e-126
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189068262   2 HSTPLIMTSTLIIIFALLIYPVLMTFSPKPQNPNWALIQVKTAVKYAFLVSLLPLCLHLNEGTESIITNLNWMNTLTFDI 81
Cdd:MTH00137   1 HPTTLIMTSSLILIFALLIYPLLTTLSPNPQKPNWALTHVKTAVKTAFFVSLLPLFLFLNQGAETIITNWNWMNTLTFDI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189068262  82 NISLKFDSYSIIFTPVALYVTWSILEFASWYMHSDPFMNRFFKYLLIFLIAMIILVTANNMFQLFIGWEGVGIMSFLLIG 161
Cdd:MTH00137  81 NISFKFDHYSIIFTPIALYVTWSILEFASWYMHADPNMNRFFKYLLIFLIAMIILVTANNMFQLFIGWEGVGIMSFLLIG 160

                        170
                 ....*....|...
gi 189068262 162 WWYARADANTAAL 174
Cdd:MTH00137 161 WWYGRADANTAAL 173
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 8-174 4.54e-29

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 111.78  E-value: 4.54e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189068262   8 MTSTLIIIFALLIYPVLMTFSPKPQNPNWALIQVKTAVKYAFLVSLLPLCLHLNEGTesIITNLNWMNTLTFDINISLKF 87
Cdd:COG1009    1 LQLLWLIPLLPLLGALLAGLLGRRLGRRAAGWLAALAPLAAFVLSLLLFPAVLGGEV--VVELYTWIPVGSLGLDFGFRL 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189068262  88 DSYSIIFTPVALYVTWSILEFASWYMHSDPFMNRFFKYLLIFLIAMIILVTANNMFQLFIGWEGVGIMSFLLIGWWYARA 167
Cdd:COG1009   79 DGLSLLMLLLVTGVGLLVHIYSIGYMSGDPGLARFFAYLLLFMAAMLGLVLSDNLLLLFVFWELVGLCSYLLIGFWYEKP 158


                 ....*..
gi 189068262 168 DANTAAL 174
Cdd:COG1009  159 SARRAAR 165
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 13-174 3.47e-24

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 98.12  E-value: 3.47e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189068262   13 IIIFALLIYPVLMTFSPKPQNPNWALIQVKTAVKYAFLVSLLPLCLHLNEGTESIITN--LNWMNTLTFDINISLKFDSY 90
Cdd:TIGR01974   5 LIVFLPLIGFLIAGLFGRRIGERVSGIIGIGSVGLSAALSAFVFVDFFLNGEGEAFTQslFPWISVGGFQVDFGLRLDGL 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189068262   91 SIIFTPVALYVTWSILEFASWYMHSDPFMNRFFKYLLIFLIAMIILVTANNMFQLFIGWEGVGIMSFLLIGWWYARADAN 170
Cdd:TIGR01974  85 SLTMLVVVTGVGSLVHIYSIGYMAHDEGYSRFFAYLNLFTFSMLMLVLADNFLQLFFGWEGVGLCSYLLIGFWYKKPSAN 164


                  ....
gi 189068262  171 TAAL 174
Cdd:TIGR01974 165 NAAI 168
Proton_antipo_N pfam00662
NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; This sub-family represents an ...
 73-123 7.37e-13

NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; This sub-family represents an amino terminal extension of pfam00361. Only NADH-Ubiquinone chain 5 and eubacterial chain L are in this family. This sub-family is part of complex I which catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane.


Pssm-ID: 459895 [Multi-domain]  Cd Length: 51  Bit Score: 59.75  E-value: 7.37e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 189068262   73 WMNTLTFDINISLKFDSYSIIFTPVALYVTWSILEFASWYMHSDPFMNRFF 123
Cdd:pfam00662   1 WLSVGDLSISFGFLIDPLSALMLLVVTGVSLLVHIYSIGYMHHDPGYARFF 51
 
Name Accession Description Interval E-value
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
 2-174 5.50e-126

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 366.85  E-value: 5.50e-126
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189068262   2 HSTPLIMTSTLIIIFALLIYPVLMTFSPKPQNPNWALIQVKTAVKYAFLVSLLPLCLHLNEGTESIITNLNWMNTLTFDI 81
Cdd:MTH00137   1 HPTTLIMTSSLILIFALLIYPLLTTLSPNPQKPNWALTHVKTAVKTAFFVSLLPLFLFLNQGAETIITNWNWMNTLTFDI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189068262  82 NISLKFDSYSIIFTPVALYVTWSILEFASWYMHSDPFMNRFFKYLLIFLIAMIILVTANNMFQLFIGWEGVGIMSFLLIG 161
Cdd:MTH00137  81 NISFKFDHYSIIFTPIALYVTWSILEFASWYMHADPNMNRFFKYLLIFLIAMIILVTANNMFQLFIGWEGVGIMSFLLIG 160

                        170
                 ....*....|...
gi 189068262 162 WWYARADANTAAL 174
Cdd:MTH00137 161 WWYGRADANTAAL 173
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
 4-174 1.09e-84

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 260.48  E-value: 1.09e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189068262   4 TPLIMTSTLIIIFALLIYPVLMTFSPKpqNPNWALIQVKTAVKYAFLVSLLPLCLHLNEGTESIITNLNWMNTLTFDINI 83
Cdd:MTH00004   1 MTLLLNTTTLLTLLILLTPILLPLLSK--NLKNSPTTIKTTVKLAFLISLIPLTLFLNSGTESITTNWPWIFTTTFNIPI 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189068262  84 SLKFDSYSIIFTPVALYVTWSILEFASWYMHSDPFMNRFFKYLLIFLIAMIILVTANNMFQLFIGWEGVGIMSFLLIGWW 163
Cdd:MTH00004  79 SFKLDQYSLMFLPIALFVTWSILEFSTWYMASDPHITKFFKYLLIFLIAMLILITANNMFQLFIGWEGVGIMSFLLIGWW 158

                        170
                 ....*....|.
gi 189068262 164 YARADANTAAL 174
Cdd:MTH00004 159 SGRAEANTAAL 169
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 3-174 4.05e-83

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 256.37  E-value: 4.05e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189068262   3 STPLIMTSTLIIIFALLIYPVLMTfspkpqNPNWALIQVKTAVKYAFLVSLLPLCLHLNEGTESIITNLNWMNTLTFDIN 82
Cdd:MTH00066   2 NLMLIFNSSMILSLLLLILPLLLP------KSNNFHTNVKTSVKTAFFISLIPLMIFINQGLESITTSFHWMNIFNFNIN 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189068262  83 ISLKFDSYSIIFTPVALYVTWSILEFASWYMHSDPFMNRFFKYLLIFLIAMIILVTANNMFQLFIGWEGVGIMSFLLIGW 162
Cdd:MTH00066  76 SSFKFDQYSIIFLPIALFVTWSILEFAIWYMHSDPKINRFFKYLLIFLIAMMILVTANNLFQLFIGWEGVGIMSFLLIGW 155

                        170
                 ....*....|..
gi 189068262 163 WYARADANTAAL 174
Cdd:MTH00066 156 WHARADANTAAL 167
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 7-174 2.62e-80

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 249.00  E-value: 2.62e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189068262   7 IMTSTLIIIFALLIYPVLMTFSPKPQNPNWALIqVKTAVKYAFLVSLLPLCLHLNEGTESIITNLNWMNTLTFDINISLK 86
Cdd:MTH00108   3 LFTSSTLLTLLILTLPIIMTLTNPYKTNNYPLY-VKTTISYAFIISLIPTMMFIHSGQEMIISNWHWMTIQTLKLSLSFK 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189068262  87 FDSYSIIFTPVALYVTWSILEFASWYMHSDPFMNRFFKYLLIFLIAMIILVTANNMFQLFIGWEGVGIMSFLLIGWWYAR 166
Cdd:MTH00108  82 LDYFSMIFIPVALFVTWSIMEFSMWYMHSDPNINRFFKYLLLFLITMLILVTANNLFQLFIGWEGVGIMSFLLIGWWYGR 161


                 ....*...
gi 189068262 167 ADANTAAL 174
Cdd:MTH00108 162 TDANTAAL 169
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 4-174 1.92e-60

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 197.10  E-value: 1.92e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189068262   4 TPLIMTSTLIIIFALLIYPVLMTfspkpqnPNWALIQVKTAVKYAFLVSLLPLCLHLNEGTESIITNLNWMNTLTFDINI 83
Cdd:MTH00211   1 MNTIFNSGFLLILILLLLPLLLP-------LNNSKLHIKKAVKLSFFISLIPLLIFLDQGLETILTNWSWINLGLFSLNL 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189068262  84 SLKFDSYSIIFTPVALYVTWSILEFASWYMHSDPFMNRFFKYLLIFLIAMIILVTANNMFQLFIGWEGVGIMSFLLIGWW 163
Cdd:MTH00211  74 SFKFDFYSIFFTSVALYVTWSILEFSLWYMSSEPNINRFFKYLLLFLIFMLILVSANNLFQLFIGWEGVGIMSFLLISWW 153

                        170
                 ....*....|.
gi 189068262 164 YARADANTAAL 174
Cdd:MTH00211 154 YGRSDANTAAL 164
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
 1-174 1.53e-41

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 146.65  E-value: 1.53e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189068262   1 MHSTPLIMTSTLIIIFALLIypvLMTFSPKPQNPNWALIQVKTAVKYAF------------------LVSLLPLCLHLNE 62
Cdd:MTH00208   3 INPSMIISSINLSIFIILLI---SIFFSSNLPNISTSNASLGGNNNNNSiinynnsnfsisllktlaFLSLINLLIWILL 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189068262  63 GTESIITNL-NWMNTLTFDINISLKFDSYSIIFTPVALYVTWSILEFASWYMHSDPFMNRFFKYLLIFLIAMIILVTANN 141
Cdd:MTH00208  80 GCPNINISLsNWLSNTLFNFSLSFIFDFYFILFFSVALFVTWSIIEFSHYYMSNDPNKNAFFRLLIIFLLNMLILTSSNN 159

                        170       180       190
                 ....*....|....*....|....*....|...
gi 189068262 142 MFQLFIGWEGVGIMSFLLIGWWYARADANTAAL 174
Cdd:MTH00208 160 LFLLFIGWEGVGFLSFLLISWWTTRNDANSSAL 192
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 7-173 1.91e-30

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 116.03  E-value: 1.91e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189068262   7 IMTSTLIIIFALLIYPVLMTFSPKPQNPNWALIQVKTAVKYAFLVSLLPLCLHLNEGTESI-ITNLNWMNTLTFDINISL 85
Cdd:PRK06590   1 MMNLLWLIVLLPLIGALILGLFGRRIGEKWAHLVGTGLVGLSALLSLVVFFDFLLGGGRAFsQTLWTWISVGDFDVDFGL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189068262  86 KFDSYSIIFTPVALYVTWSILEFASWYMHSDPFMNRFFKYLLIFLIAMIILVTANNMFQLFIGWEGVGIMSFLLIGWWYA 165
Cdd:PRK06590  81 RVDGLSATMLVVVTGVSFLVHIYSIGYMAHDEGYRRFFAYLNLFTFSMLMLVLSDNLLQLFFGWEGVGLCSYLLIGFWYK 160


                 ....*...
gi 189068262 166 RADANTAA 173
Cdd:PRK06590 161 KPSAGAAA 168
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 8-174 4.54e-29

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 111.78  E-value: 4.54e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189068262   8 MTSTLIIIFALLIYPVLMTFSPKPQNPNWALIQVKTAVKYAFLVSLLPLCLHLNEGTesIITNLNWMNTLTFDINISLKF 87
Cdd:COG1009    1 LQLLWLIPLLPLLGALLAGLLGRRLGRRAAGWLAALAPLAAFVLSLLLFPAVLGGEV--VVELYTWIPVGSLGLDFGFRL 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189068262  88 DSYSIIFTPVALYVTWSILEFASWYMHSDPFMNRFFKYLLIFLIAMIILVTANNMFQLFIGWEGVGIMSFLLIGWWYARA 167
Cdd:COG1009   79 DGLSLLMLLLVTGVGLLVHIYSIGYMSGDPGLARFFAYLLLFMAAMLGLVLSDNLLLLFVFWELVGLCSYLLIGFWYEKP 158


                 ....*..
gi 189068262 168 DANTAAL 174
Cdd:COG1009  159 SARRAAR 165
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 13-174 3.47e-24

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 98.12  E-value: 3.47e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189068262   13 IIIFALLIYPVLMTFSPKPQNPNWALIQVKTAVKYAFLVSLLPLCLHLNEGTESIITN--LNWMNTLTFDINISLKFDSY 90
Cdd:TIGR01974   5 LIVFLPLIGFLIAGLFGRRIGERVSGIIGIGSVGLSAALSAFVFVDFFLNGEGEAFTQslFPWISVGGFQVDFGLRLDGL 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189068262   91 SIIFTPVALYVTWSILEFASWYMHSDPFMNRFFKYLLIFLIAMIILVTANNMFQLFIGWEGVGIMSFLLIGWWYARADAN 170
Cdd:TIGR01974  85 SLTMLVVVTGVGSLVHIYSIGYMAHDEGYSRFFAYLNLFTFSMLMLVLADNFLQLFFGWEGVGLCSYLLIGFWYKKPSAN 164


                  ....
gi 189068262  171 TAAL 174
Cdd:TIGR01974 165 NAAI 168
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 71-174 5.38e-20

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 85.90  E-value: 5.38e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189068262  71 LNWMNTLTFDINISLKFDSYSIIFTPVALYVTWSILEFASWYMHSDPFMNRFFKYLLIFLIAMIILVTANNMFQLFIGWE 150
Cdd:MTH00020  62 WRWLDSDLLTVYFGLQFDGLVAIMLLVVTTVSTLVHIFSTAYMRGDPHIPRFMSYLSLFTFLMVVLVTSDNYLQLFIGWE 141

                         90       100
                 ....*....|....*....|....
gi 189068262 151 GVGIMSFLLIGWWYARADANTAAL 174
Cdd:MTH00020 142 GVGLCSYLLINFWLTRIEANKAAI 165
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 73-174 8.47e-19

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 82.75  E-value: 8.47e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189068262  73 WMNTLTFDINISLKFDSYSIIFTPVALYVTWSILEFASWYMHSDPFMNRFFKYLLIFLIAMIILVTANNMFQLFIGWEGV 152
Cdd:MTH00210  64 WFDSELLTTYFGLQFDSLTSTMLIVITSVSALVHIYSTGYMSGDPHIPRFMSYLSLFTFLMIVLVTSDNYVQLFIGWEGV 143

                         90       100
                 ....*....|....*....|..
gi 189068262 153 GIMSFLLIGWWYARADANTAAL 174
Cdd:MTH00210 144 GLCSYLLINFWLTRIKANKAAI 165
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 73-174 3.33e-17

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 78.08  E-value: 3.33e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189068262  73 WMNTLTFDINISLKFDSYSIIFTPVALYVTWSILEFASWYMHSDPFMNRFFKYLLIFLIAMIILVTANNMFQLFIGWEGV 152
Cdd:MTH00032  64 WIESEIFITHIGLLYDTLSVTMLLVISSISTLVHIYSTSYMSDDPHVPRFLCYLSLFTFLMMVLVTSDNYLQLFIGWEGV 143

                         90       100
                 ....*....|....*....|..
gi 189068262 153 GIMSFLLIGWWYARADANTAAL 174
Cdd:MTH00032 144 GVCSYLLVAFWTTRIQANKAAI 165
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
 47-160 1.33e-14

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 70.26  E-value: 1.33e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189068262  47 YAFLVSLLPLCLHLNEGTESIITNLNWMNTLTFDINISLKFDSYSIIFTPVALYVTWSILEFASWYMHSDPFMNRFFKYL 126
Cdd:MTH00151  12 FSYSVFLFPLLGYFGLNGISLIFEWELLSVSSCSFSFELVLDWVSLSFSGVVCLISGCVFLFSSSYMSEDPFLKRFMWLV 91

                         90       100       110
                 ....*....|....*....|....*....|....
gi 189068262 127 LIFLIAMIILVTANNMFQLFIGWEGVGIMSFLLI 160
Cdd:MTH00151  92 MLFVLSMNLLIFIPSLPSLLLGWDGLGIVSFALV 125
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 79-174 6.58e-14

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 68.41  E-value: 6.58e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189068262  79 FDINISLKFDSYSIIFtpvALYVT---WSILEFASWYMHSDPFMNRFFKYLLIFLIAMIILVTANNMFQLFIGWEGVGIM 155
Cdd:PRK12647  54 LGVNLSFLLDGLSLTF---ALLITgigTLIVLYAGGYLKGHPDLGRFYSYILLFMASMLGLVLSDNLITLFVFWELTSIT 130

                         90
                 ....*....|....*....
gi 189068262 156 SFLLIGWWYARADANTAAL 174
Cdd:PRK12647 131 SFLLIGFNHEREAARRAAL 149
PRK12648 PRK12648
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-169 4.05e-13

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237157 [Multi-domain]  Cd Length: 948  Bit Score: 66.37  E-value: 4.05e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189068262  48 AFLVSLLPLCLHLNE-----GTESIITNLNWMNTLtfDINISLKFDSYSIIFTPVALYVTWSILEFASWYMHSDPFMNRF 122
Cdd:PRK12648  32 AGLVALAALVLLALLypavaAGEVIRAEIEWLPAL--GLNLSLRLDGLAWLFALLILGIGLLVVLYARYYLSPADPVPRF 109

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 189068262 123 FKYLLIFLIAMIILVTANNMFQLFIGWEGVGIMSFLLIGWWYARADA 169
Cdd:PRK12648 110 FSFLLLFMGAMLGIVLSGNLILLVVFWELTSLSSFLLIGYWHHRADA 156
Proton_antipo_N pfam00662
NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; This sub-family represents an ...
 73-123 7.37e-13

NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; This sub-family represents an amino terminal extension of pfam00361. Only NADH-Ubiquinone chain 5 and eubacterial chain L are in this family. This sub-family is part of complex I which catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane.


Pssm-ID: 459895 [Multi-domain]  Cd Length: 51  Bit Score: 59.75  E-value: 7.37e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 189068262   73 WMNTLTFDINISLKFDSYSIIFTPVALYVTWSILEFASWYMHSDPFMNRFF 123
Cdd:pfam00662   1 WLSVGDLSISFGFLIDPLSALMLLVVTGVSLLVHIYSIGYMHHDPGYARFF 51
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 49-160 2.24e-12

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 64.02  E-value: 2.24e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189068262  49 FLVSLLPLCLHLNEGTESIITNLNWMNTLTFDINISLKFDSYSIIFTPVALYVTWSILEFASWYMHSDPFMNRFFKYLLI 128
Cdd:MTH00207  17 MSILMFPLSLYLMMCNKTILIEWEIFTISSSPINFTIILDPTGTLFSSTVLFISANVLLFAKTYMQEDKFLSRFISLVLL 96

                         90       100       110
                 ....*....|....*....|....*....|..
gi 189068262 129 FLIAMIILVTANNMFQLFIGWEGVGIMSFLLI 160
Cdd:MTH00207  97 FVLSMNMLIFFPHLMILLLGWDGLGLVSFILV 128
PRK12646 PRK12646
DUF4040 family protein;
69-174 2.45e-12

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 64.01  E-value: 2.45e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189068262  69 TNLNWMNTLtfDINISLKFDSYSIIFTPVALYVTWSILEFASWYM-HSDPFMNRFFKYLLIFLIAMIILVTANNMFQLFI 147
Cdd:PRK12646  60 TSIPWMKTL--DINLDLRLDGLSLMFSLIISLIGIAVFFYATQYLsSRKDNLPRFYFYLTLFMFSMIGIVLSDNTILMYV 137

                         90       100
                 ....*....|....*....|....*..
gi 189068262 148 GWEGVGIMSFLLIGWWYARADANTAAL 174
Cdd:PRK12646 138 FWELTSVSSFLLISYWYNNGDSQFGAI 164
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 73-174 3.19e-12

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 63.79  E-value: 3.19e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189068262  73 WMNTLTfdINISLKFDSYSIIFTPVALYVTWSILEFASWYMHSD-PFMNRFFKYLLIFLIAMIILVTANNMFQLFIGWEG 151
Cdd:PRK12644  60 WIPSLG--LDLAFRLDALAALMSLLVLGVGALVLLYCARYFDDDePRLGRFAAELVAFAGAMFGLVTSDNLLLLYVFWEL 137

                         90       100
                 ....*....|....*....|...
gi 189068262 152 VGIMSFLLIGWWYARADANTAAL 174
Cdd:PRK12644 138 TTVLSFLLIGHYAERAASRRAAL 160
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 66-160 5.60e-12

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 62.85  E-value: 5.60e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189068262  66 SIITNLNWMNTLTFDINISLKFDSYSIIFTPVALYVTWSILEFASWYMHSDPFMNRFFKYLLIFLIAMIILVTANNMFQL 145
Cdd:MTH00165  31 SLFIEWELFSLNSSSIVMTFLFDWMSLLFMSFVLFISSMVIYYSKSYMSGDKNINRFIYLVLLFVLSMMLLIISPNLISI 110

                         90
                 ....*....|....*
gi 189068262 146 FIGWEGVGIMSFLLI 160
Cdd:MTH00165 111 LLGWDGLGLVSYCLV 125
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
92-173 1.58e-11

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 61.58  E-value: 1.58e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189068262  92 IIFTPVALYVtwsiLEFASWYMHSDPFMNRFFKYLLIFLIAMIILVTANNMFQLFIGWEGVGIMSFLLIGWWYARADANT 171
Cdd:PRK07376  98 VLVTTVALLV----MIYSDGYMAHDPGYVRFFAYLSLFSSSMLGLVISPNLVQIYVFWELVGMCSYLLVGFWYDRKGAAD 173


                 ..
gi 189068262 172 AA 173
Cdd:PRK07376 174 AA 175
PRK12650 PRK12650
DUF4040 family protein;
73-161 9.04e-10

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 56.59  E-value: 9.04e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189068262  73 WMNTL---TFDINISLKFDSYSIIFTPVALYVTWSILEFASWYMHSDPFMNRFFKYLLIFLIAMIILVTANNMFQLFIGW 149
Cdd:PRK12650  60 WIPDLlgnGVDVNLALRADALSLFFALLALVIGAVVFIYSARYLPRKKGNTSFYLLMTAFMAAMLLLVLADDVVVLFVAW 139

                         90
                 ....*....|..
gi 189068262 150 EGVGIMSFLLIG 161
Cdd:PRK12650 140 ELVSLASFFLIA 151
ndhF CHL00025
NADH dehydrogenase subunit 5
 112-172 1.44e-09

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 56.05  E-value: 1.44e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 189068262 112 YMHSDPFMNRFFKYLLIFLIAMIILVTANNMFQLFIGWEGVGIMSFLLIGWWYARADANTA 172
Cdd:CHL00025 114 YMSHDQGYLRFFAYLSFFNTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAANA 174
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 81-160 1.55e-09

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 55.81  E-value: 1.55e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189068262  81 INISLKFDSYSIIFTPVALYVTWSILEFASWYMHSDPFMNRFFKYLLIFLIAMIILVTANNMFQLFIGWEGVGIMSFLLI 160
Cdd:MTH00209  44 ISFPLIIDKMSLLFSSVVLLISGSVMWFSTSYMAGEKFKKRFILLVLLFILSMNFLIFVPNLITLLLGWDGLGLVSYLLV 123
PRK12645 PRK12645
monovalent cation/H+ antiporter subunit A; Reviewed
 65-166 2.43e-09

monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237155 [Multi-domain]  Cd Length: 800  Bit Score: 55.32  E-value: 2.43e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189068262  65 ESIITNLNWMNTLtfDINISLKFDSYSIIFTPV-----ALYVTWSIlefasWYMHSDP-FMNRFFKYLLIFLIAMIILVT 138
Cdd:PRK12645  56 NTVMKTLPWIPSL--GINFTLYVDGLSLLFALLitgigSLVVLYSI-----YYLSKKKeQLGNFYVYLLLFMGAMLGVVL 128

                         90       100
                 ....*....|....*....|....*...
gi 189068262 139 ANNMFQLFIGWEGVGIMSFLLIGWWYAR 166
Cdd:PRK12645 129 SDNLIVLYLFWELTSISSFLLISYWYER 156
ND5 MTH00095
NADH dehydrogenase subunit 5; Provisional
 81-164 9.15e-09

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177158 [Multi-domain]  Cd Length: 527  Bit Score: 53.38  E-value: 9.15e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189068262  81 INISLKFDSYSIIFTPVALYVTWSILEFASWYMHSDPFMNRFFKYLLIFLIAMIILVTANNMFQLFIGWEGVGIMSFLLI 160
Cdd:MTH00095  37 LSLKFNFYFNSLLFSLILLLVTLSVLVFSSYYMNGELNFNYFYFVLLIFVGSMFMLNFSNSVFTMLLSWDLLGISSFFLV 116


                 ....
gi 189068262 161 GWWY 164
Cdd:MTH00095 117 LFYN 120
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 81-166 1.91e-08

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 52.52  E-value: 1.91e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189068262  81 INISLKFDSYSIIFTPVALYVTWSILEFASWYMHSDPFMNRFFKYLLIFLIAMIILVTANNMFQLFIGWEGVGIMSFLLI 160
Cdd:PRK12649  72 VEFSIYADGLAVLIGLIASGIGVIIMSYSNGYMSHKEDLPRYYQYLLLFMGSMIGMVFSGNTIQLFIFWELTSITSFMLI 151


                 ....*.
gi 189068262 161 GWWYAR 166
Cdd:PRK12649 152 GYWRHR 157
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 83-161 6.06e-05

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 42.06  E-value: 6.06e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 189068262  83 ISLKFDSYSIIFTPVALYVTWSILEFASWYMHSDPFMNRFFKYLLIFLIAMIILVTANNMFQLFIGWEGVGIMSFLLIG 161
Cdd:COG0651   70 IVLVADRLSALFLLLTALVALAVLLYSIGYMRHERRGRRFYPLFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVA 148
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
103-154 2.14e-04

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 40.84  E-value: 2.14e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 189068262 103 WSILEFASWYMHSDPFMNRFFKYLLIFLIAMIILVTANNMFQLFIGWEGVGI 154
Cdd:PRK08168  83 WVIGRFSHRYLQGEPGQRRYVRALAGVLAAVHLLVLSDHLLVLIAAWAAISL 134
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 66-174 8.30e-04

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 38.94  E-value: 8.30e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189068262  66 SIITNLNWMNTLTFdiNISLKFDSYSIIFTPVALYVTWSILEFASWYMHSDPfMNRF-FKYLLIF-LIAMIILVTANNMF 143
Cdd:COG1007   49 LLLLALGGGTGTAF--GGMFVVDGFALFFKLLILLAALLVLLLSRDYLERRG-LLRGeFYALLLFaTLGMMLMASANDLL 125

                         90       100       110
                 ....*....|....*....|....*....|.
gi 189068262 144 QLFIGWEGVGIMSFLLIGWWYARADANTAAL 174
Cdd:COG1007  126 TLFLGLELLSLSLYVLVAFRRDDRRSSEAAL 156
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
 48-173 1.62e-03

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 37.97  E-value: 1.62e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189068262  48 AFLVSLLPLCLHLNEGTESIitNLNWMNTLTFDINISLKFDSYSIIFTPVALYVTWSILEFASWYMHSDPFMNRFFKYLL 127
Cdd:PRK07390  50 AFVHSLLALRAIWNQPPQQL--SFPWLQVADLDLSLSLEISPVTLGALELITGLSLLAQIYALGYLEKDWGLARFFALLG 127

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 189068262 128 IFLIAMIILVTANNMFQLFIGWEGVGIMSFLLIGWWYARADANTAA 173
Cdd:PRK07390 128 FFEAAMSGLALSDSLFFSYVLLEILTLSTYLLVGFWYAQPLVVTAA 173
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 120-174 8.96e-03

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 35.72  E-value: 8.96e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 189068262 120 NRFFKYLLIFLIAMIILVTANNMFQLFIGWEGVGIMSFLLIGwWYARADANTAAL 174
Cdd:PRK06525 113 GRYYAFLLLFIGAMAGLVYSSTLLGLLLFFEITGLCSWALIS-YYQSPKALRSAL 166
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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