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Conserved domains on  [gi|194384354|dbj|BAG64950|]
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unnamed protein product [Homo sapiens]

Protein Classification

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List of domain hits

 Name Accession Description Interval E-value
PINIT pfam14324
PINIT domain; The PINIT domain is a protein domain that is found in PIAS proteins. The PINIT ...
 121-254 5.01e-34

PINIT domain; The PINIT domain is a protein domain that is found in PIAS proteins. The PINIT domain is about 180 amino acids in length.


:

Pssm-ID: 464136  Cd Length: 137  Bit Score: 120.77  E-value: 5.01e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194384354  121 KPLPFYEVYGEFIRPTTLASTSSQRfEEAHFTFALTPQQVQQILTSREvlpgakcdytiQVQLRFCL------CETSCPQ 194
Cdd:pfam14324   1 KPSPFYKILELLLSPTELPAPSQGR-NTVSFSFTLTPDQVQLLAKSDR-----------SYQLRLFCaasdtqSETSGEQ 68

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 194384354  195 EDYFPPNLFVKVNGKLCplpgylPPTKNGAEPKR-PSRPINITPLARLSATVPNTIVVNWS 254
Cdd:pfam14324  69 DIEFPPPLEIKVNGKQV------KANLRGLKNKPgTTRPVDITPYLRLSPGYPNTIEITYA 123
SAP super family cl46922
Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation;
2-27 1.96e-03

Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation;


The actual alignment was detected with superfamily member smart00513:

Pssm-ID: 128789 [Multi-domain]  Cd Length: 35  Bit Score: 35.15  E-value: 1.96e-03
                           10        20
                   ....*....|....*....|....*.
gi 194384354     2 VMSFRVSELQVLLGFAGRNKSGRKHE 27
Cdd:smart00513   1 LAKLKVSELKDELKKRGLSTSGTKAE 26
 
Name Accession Description Interval E-value
PINIT pfam14324
PINIT domain; The PINIT domain is a protein domain that is found in PIAS proteins. The PINIT ...
 121-254 5.01e-34

PINIT domain; The PINIT domain is a protein domain that is found in PIAS proteins. The PINIT domain is about 180 amino acids in length.


Pssm-ID: 464136  Cd Length: 137  Bit Score: 120.77  E-value: 5.01e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194384354  121 KPLPFYEVYGEFIRPTTLASTSSQRfEEAHFTFALTPQQVQQILTSREvlpgakcdytiQVQLRFCL------CETSCPQ 194
Cdd:pfam14324   1 KPSPFYKILELLLSPTELPAPSQGR-NTVSFSFTLTPDQVQLLAKSDR-----------SYQLRLFCaasdtqSETSGEQ 68

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 194384354  195 EDYFPPNLFVKVNGKLCplpgylPPTKNGAEPKR-PSRPINITPLARLSATVPNTIVVNWS 254
Cdd:pfam14324  69 DIEFPPPLEIKVNGKQV------KANLRGLKNKPgTTRPVDITPYLRLSPGYPNTIEITYA 123
SAP smart00513
Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation;
2-27 1.96e-03

Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation;


Pssm-ID: 128789 [Multi-domain]  Cd Length: 35  Bit Score: 35.15  E-value: 1.96e-03
                           10        20
                   ....*....|....*....|....*.
gi 194384354     2 VMSFRVSELQVLLGFAGRNKSGRKHE 27
Cdd:smart00513   1 LAKLKVSELKDELKKRGLSTSGTKAE 26
 
Name Accession Description Interval E-value
PINIT pfam14324
PINIT domain; The PINIT domain is a protein domain that is found in PIAS proteins. The PINIT ...
 121-254 5.01e-34

PINIT domain; The PINIT domain is a protein domain that is found in PIAS proteins. The PINIT domain is about 180 amino acids in length.


Pssm-ID: 464136  Cd Length: 137  Bit Score: 120.77  E-value: 5.01e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194384354  121 KPLPFYEVYGEFIRPTTLASTSSQRfEEAHFTFALTPQQVQQILTSREvlpgakcdytiQVQLRFCL------CETSCPQ 194
Cdd:pfam14324   1 KPSPFYKILELLLSPTELPAPSQGR-NTVSFSFTLTPDQVQLLAKSDR-----------SYQLRLFCaasdtqSETSGEQ 68

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 194384354  195 EDYFPPNLFVKVNGKLCplpgylPPTKNGAEPKR-PSRPINITPLARLSATVPNTIVVNWS 254
Cdd:pfam14324  69 DIEFPPPLEIKVNGKQV------KANLRGLKNKPgTTRPVDITPYLRLSPGYPNTIEITYA 123
SAP smart00513
Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation;
2-27 1.96e-03

Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation;


Pssm-ID: 128789 [Multi-domain]  Cd Length: 35  Bit Score: 35.15  E-value: 1.96e-03
                           10        20
                   ....*....|....*....|....*.
gi 194384354     2 VMSFRVSELQVLLGFAGRNKSGRKHE 27
Cdd:smart00513   1 LAKLKVSELKDELKKRGLSTSGTKAE 26
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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