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Conserved domains on  [gi|215737509|dbj|BAG96639|]
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unnamed protein product [Oryza sativa Japonica Group]

Protein Classification

DUF3778 domain-containing protein( domain architecture ID 10576519)

DUF3778 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3778 pfam12620
Protein of unknown function (DUF3778); This domain family is found in eukaryotes, and is ...
 169-220 2.14e-23

Protein of unknown function (DUF3778); This domain family is found in eukaryotes, and is typically between 48 and 61 amino acids in length. There is a conserved LRF sequence motif.


:

Pssm-ID: 432675  Cd Length: 52  Bit Score: 89.96  E-value: 2.14e-23
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 215737509  169 LLQGGWIWGPSPSSFLGSCIHAGWAIRVELMLLRFKGELRGEVWLSPVKLTP 220
Cdd:pfam12620   1 LLQGGWIWDPSSSLFPGSRIHAGFVIRVELGLLRFNDELRGEVLLSPVKLTP 52
 
Name Accession Description Interval E-value
DUF3778 pfam12620
Protein of unknown function (DUF3778); This domain family is found in eukaryotes, and is ...
 169-220 2.14e-23

Protein of unknown function (DUF3778); This domain family is found in eukaryotes, and is typically between 48 and 61 amino acids in length. There is a conserved LRF sequence motif.


Pssm-ID: 432675  Cd Length: 52  Bit Score: 89.96  E-value: 2.14e-23
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 215737509  169 LLQGGWIWGPSPSSFLGSCIHAGWAIRVELMLLRFKGELRGEVWLSPVKLTP 220
Cdd:pfam12620   1 LLQGGWIWDPSSSLFPGSRIHAGFVIRVELGLLRFNDELRGEVLLSPVKLTP 52
 
Name Accession Description Interval E-value
DUF3778 pfam12620
Protein of unknown function (DUF3778); This domain family is found in eukaryotes, and is ...
 169-220 2.14e-23

Protein of unknown function (DUF3778); This domain family is found in eukaryotes, and is typically between 48 and 61 amino acids in length. There is a conserved LRF sequence motif.


Pssm-ID: 432675  Cd Length: 52  Bit Score: 89.96  E-value: 2.14e-23
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 215737509  169 LLQGGWIWGPSPSSFLGSCIHAGWAIRVELMLLRFKGELRGEVWLSPVKLTP 220
Cdd:pfam12620   1 LLQGGWIWDPSSSLFPGSRIHAGFVIRVELGLLRFNDELRGEVLLSPVKLTP 52
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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