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Conserved domains on  [gi|215766116|dbj|BAG98344|]
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unnamed protein product [Oryza sativa Japonica Group]

Protein Classification

zinc finger CCCH domain-containing protein( domain architecture ID 10457906)

zinc finger CCCH domain-containing protein similar to Homo sapiens proline-rich protein 3 (PRR3)

CATH:  4.10.1000.10
Gene Ontology:  GO:0046872|GO:0003676
PubMed:  12665246|27990022
SCOP:  3001741

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
102-126 7.14e-04

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


:

Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 36.02  E-value: 7.14e-04
                          10        20
                  ....*....|....*....|....*
gi 215766116  102 EPCPDFRRrpGAACPRGSTCPFAHG 126
Cdd:pfam00642   4 ELCRFFLR--TGYCKYGDRCKFAHG 26
 
Name Accession Description Interval E-value
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
102-126 7.14e-04

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 36.02  E-value: 7.14e-04
                          10        20
                  ....*....|....*....|....*
gi 215766116  102 EPCPDFRRrpGAACPRGSTCPFAHG 126
Cdd:pfam00642   4 ELCRFFLR--TGYCKYGDRCKFAHG 26
ZnF_C3H1 smart00356
zinc finger;
102-126 3.59e-03

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 34.14  E-value: 3.59e-03
                           10        20
                   ....*....|....*....|....*
gi 215766116   102 EPCPDFRRRpgaACPRGSTCPFAHG 126
Cdd:smart00356   5 ELCKFFKRG---YCPRGDRCKFAHP 26
 
Name Accession Description Interval E-value
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
102-126 7.14e-04

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 36.02  E-value: 7.14e-04
                          10        20
                  ....*....|....*....|....*
gi 215766116  102 EPCPDFRRrpGAACPRGSTCPFAHG 126
Cdd:pfam00642   4 ELCRFFLR--TGYCKYGDRCKFAHG 26
ZnF_C3H1 smart00356
zinc finger;
102-126 3.59e-03

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 34.14  E-value: 3.59e-03
                           10        20
                   ....*....|....*....|....*
gi 215766116   102 EPCPDFRRRpgaACPRGSTCPFAHG 126
Cdd:smart00356   5 ELCKFFKRG---YCPRGDRCKFAHP 26
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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