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Conserved domains on  [gi|215767024|dbj|BAG99252|]
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unnamed protein product [Oryza sativa Japonica Group]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PH_2 super family cl07176
Plant pleckstrin homology-like region; This family describes a pleckstrin homology (PH)-like ...
 92-187 2.30e-20

Plant pleckstrin homology-like region; This family describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function.


The actual alignment was detected with superfamily member pfam08458:

Pssm-ID: 430008  Cd Length: 104  Bit Score: 81.53  E-value: 2.30e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215767024   92 LRVRLPCGSVRLRKVAVFPQCD-RVVLRLGKKHLHGAFSTYKNYEVLDVSSN----GGDVVVDGMVLFPLVLRTAAGVVQ 166
Cdd:pfam08458   2 LLKRTRKGKLHWKTVSVYINKSgQVVLKIKSKHVGGAFSKKKKSVVYDVCGDipawPGRREEGGERRYYFGLKTAEGIIE 81

                          90       100
                  ....*....|....*....|.
gi 215767024  167 LLLDSQMHCKVWKNAIEGILS 187
Cdd:pfam08458  82 FECKSKSEYKIWVQGINHLLE 102
Auxin_canalis super family cl05327
Auxin canalization; This domain is frequently found at the N-terminus of proteins containing ...
 16-74 4.58e-03

Auxin canalization; This domain is frequently found at the N-terminus of proteins containing pfam08458 at the C-terminus. It is a component of the auto-regulatory loop which enables auxin canalization by recruitment of the PIN1 auxin efflux protein to the cell membrane.


The actual alignment was detected with superfamily member pfam05703:

Pssm-ID: 399016  Cd Length: 258  Bit Score: 36.99  E-value: 4.58e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 215767024   16 CAEAAELAGTNRSGVTSAVKTGVESCSSAELLTLTATAATCLRGAAALKLRA--DVRGIGS 74
Cdd:pfam05703 191 CVEAAEAMGAERDQLASVVSSAVNVRSPGDIMTLTAAAATALRGAATLKARAqkEVWNIAA 251
 
Name Accession Description Interval E-value
PH_2 pfam08458
Plant pleckstrin homology-like region; This family describes a pleckstrin homology (PH)-like ...
 92-187 2.30e-20

Plant pleckstrin homology-like region; This family describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function.


Pssm-ID: 430008  Cd Length: 104  Bit Score: 81.53  E-value: 2.30e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215767024   92 LRVRLPCGSVRLRKVAVFPQCD-RVVLRLGKKHLHGAFSTYKNYEVLDVSSN----GGDVVVDGMVLFPLVLRTAAGVVQ 166
Cdd:pfam08458   2 LLKRTRKGKLHWKTVSVYINKSgQVVLKIKSKHVGGAFSKKKKSVVYDVCGDipawPGRREEGGERRYYFGLKTAEGIIE 81

                          90       100
                  ....*....|....*....|.
gi 215767024  167 LLLDSQMHCKVWKNAIEGILS 187
Cdd:pfam08458  82 FECKSKSEYKIWVQGINHLLE 102
Auxin_canalis pfam05703
Auxin canalization; This domain is frequently found at the N-terminus of proteins containing ...
 16-74 4.58e-03

Auxin canalization; This domain is frequently found at the N-terminus of proteins containing pfam08458 at the C-terminus. It is a component of the auto-regulatory loop which enables auxin canalization by recruitment of the PIN1 auxin efflux protein to the cell membrane.


Pssm-ID: 399016  Cd Length: 258  Bit Score: 36.99  E-value: 4.58e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 215767024   16 CAEAAELAGTNRSGVTSAVKTGVESCSSAELLTLTATAATCLRGAAALKLRA--DVRGIGS 74
Cdd:pfam05703 191 CVEAAEAMGAERDQLASVVSSAVNVRSPGDIMTLTAAAATALRGAATLKARAqkEVWNIAA 251
 
Name Accession Description Interval E-value
PH_2 pfam08458
Plant pleckstrin homology-like region; This family describes a pleckstrin homology (PH)-like ...
 92-187 2.30e-20

Plant pleckstrin homology-like region; This family describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function.


Pssm-ID: 430008  Cd Length: 104  Bit Score: 81.53  E-value: 2.30e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215767024   92 LRVRLPCGSVRLRKVAVFPQCD-RVVLRLGKKHLHGAFSTYKNYEVLDVSSN----GGDVVVDGMVLFPLVLRTAAGVVQ 166
Cdd:pfam08458   2 LLKRTRKGKLHWKTVSVYINKSgQVVLKIKSKHVGGAFSKKKKSVVYDVCGDipawPGRREEGGERRYYFGLKTAEGIIE 81

                          90       100
                  ....*....|....*....|.
gi 215767024  167 LLLDSQMHCKVWKNAIEGILS 187
Cdd:pfam08458  82 FECKSKSEYKIWVQGINHLLE 102
Auxin_canalis pfam05703
Auxin canalization; This domain is frequently found at the N-terminus of proteins containing ...
 16-74 4.58e-03

Auxin canalization; This domain is frequently found at the N-terminus of proteins containing pfam08458 at the C-terminus. It is a component of the auto-regulatory loop which enables auxin canalization by recruitment of the PIN1 auxin efflux protein to the cell membrane.


Pssm-ID: 399016  Cd Length: 258  Bit Score: 36.99  E-value: 4.58e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 215767024   16 CAEAAELAGTNRSGVTSAVKTGVESCSSAELLTLTATAATCLRGAAALKLRA--DVRGIGS 74
Cdd:pfam05703 191 CVEAAEAMGAERDQLASVVSSAVNVRSPGDIMTLTAAAATALRGAATLKARAqkEVWNIAA 251
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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