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Os05g0105600 [Oryza sativa Japonica Group]
YTH domain-containing protein( domain architecture ID 10514278)
YTH domain-containing protein acts as a N6-methyladenosine (m6A) reader to read m6A marks and transduces their downstream regulatory effects by altering m6A-mRNA metabolism processes
List of domain hits
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Name | Accession | Description | Interval | E-value | |||
YTH | pfam04146 | YT521-B-like domain; A protein of the YTH family has been shown to selectively remove ... |
432-574 | 8.41e-57 | |||
YT521-B-like domain; A protein of the YTH family has been shown to selectively remove transcripts of meiosis-specific genes expressed in mitotic cells. It has been speculated that in higher eukaryotic YTH-family members may be involved in similar mechanisms to suppress gene regulation during gametogenesis or general silencing. The rat protein YT521-B is a tyrosine-phosphorylated nuclear protein, that interacts with the nuclear transcriptosomal component scaffold attachment factor B, and the 68-kDa Src substrate associated during mitosis, Sam68. In vivo splicing assays demonstrated that YT521-B modulates alternative splice site selection in a concentration-dependent manner. The YTH domain has been identified as part of the PUA superfamily. : Pssm-ID: 461195 Cd Length: 135 Bit Score: 188.09 E-value: 8.41e-57
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Name | Accession | Description | Interval | E-value | |||
YTH | pfam04146 | YT521-B-like domain; A protein of the YTH family has been shown to selectively remove ... |
432-574 | 8.41e-57 | |||
YT521-B-like domain; A protein of the YTH family has been shown to selectively remove transcripts of meiosis-specific genes expressed in mitotic cells. It has been speculated that in higher eukaryotic YTH-family members may be involved in similar mechanisms to suppress gene regulation during gametogenesis or general silencing. The rat protein YT521-B is a tyrosine-phosphorylated nuclear protein, that interacts with the nuclear transcriptosomal component scaffold attachment factor B, and the 68-kDa Src substrate associated during mitosis, Sam68. In vivo splicing assays demonstrated that YT521-B modulates alternative splice site selection in a concentration-dependent manner. The YTH domain has been identified as part of the PUA superfamily. Pssm-ID: 461195 Cd Length: 135 Bit Score: 188.09 E-value: 8.41e-57
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YTH | cd21134 | YTH (YT521-B homology) domains are RNA-binding domains that belong to the PUA superfamily; ... |
433-573 | 1.49e-46 | |||
YTH (YT521-B homology) domains are RNA-binding domains that belong to the PUA superfamily; Individual members of the YTH family have been shown to selectively remove transcripts of meiosis-specific genes expressed in mitotic cells. In general, eukaryotic YTH-family members may be involved in similar mechanisms to suppress gene regulation during gametogenesis or in other forms of silencing. The YTH domain is a novel RNA-binding domain that has been shown to bind to short, degenerate, single-stranded RNA motifs that loosely follow a consensus sequence. It belongs to the larger PUA superfamily. Pssm-ID: 410979 Cd Length: 133 Bit Score: 160.43 E-value: 1.49e-46
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Name | Accession | Description | Interval | E-value | |||
YTH | pfam04146 | YT521-B-like domain; A protein of the YTH family has been shown to selectively remove ... |
432-574 | 8.41e-57 | |||
YT521-B-like domain; A protein of the YTH family has been shown to selectively remove transcripts of meiosis-specific genes expressed in mitotic cells. It has been speculated that in higher eukaryotic YTH-family members may be involved in similar mechanisms to suppress gene regulation during gametogenesis or general silencing. The rat protein YT521-B is a tyrosine-phosphorylated nuclear protein, that interacts with the nuclear transcriptosomal component scaffold attachment factor B, and the 68-kDa Src substrate associated during mitosis, Sam68. In vivo splicing assays demonstrated that YT521-B modulates alternative splice site selection in a concentration-dependent manner. The YTH domain has been identified as part of the PUA superfamily. Pssm-ID: 461195 Cd Length: 135 Bit Score: 188.09 E-value: 8.41e-57
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YTH | cd21134 | YTH (YT521-B homology) domains are RNA-binding domains that belong to the PUA superfamily; ... |
433-573 | 1.49e-46 | |||
YTH (YT521-B homology) domains are RNA-binding domains that belong to the PUA superfamily; Individual members of the YTH family have been shown to selectively remove transcripts of meiosis-specific genes expressed in mitotic cells. In general, eukaryotic YTH-family members may be involved in similar mechanisms to suppress gene regulation during gametogenesis or in other forms of silencing. The YTH domain is a novel RNA-binding domain that has been shown to bind to short, degenerate, single-stranded RNA motifs that loosely follow a consensus sequence. It belongs to the larger PUA superfamily. Pssm-ID: 410979 Cd Length: 133 Bit Score: 160.43 E-value: 1.49e-46
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Blast search parameters | ||||
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