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Conserved domains on  [gi|1049304929|dbj|BAV38166|]
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LacZ alpha fragment, partial [Gateway vector pPlatC63NN]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Bgal_small_N super family cl46900
Beta galactosidase small chain; This domain comprises the small chain of dimeric ...
 39-92 4.81e-28

Beta galactosidase small chain; This domain comprises the small chain of dimeric beta-galactosidases EC:3.2.1.23. This domain is also found in single chain beta-galactosidase.


The actual alignment was detected with superfamily member PRK09525:

Pssm-ID: 481240 [Multi-domain]  Cd Length: 1027  Bit Score: 105.40  E-value: 4.81e-28
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1049304929   39 RSLAVVLQRRDWENPGVTQLNRLAAHPPFASWRNSEEARTDRPSQQLRSLNGEW 92
Cdd:PRK09525     6 DSLAQILARRDWENPGVTQLNRLPAHPPFASWRNSEAARDDRPSQQRQSLNGEW 59
 
Name Accession Description Interval E-value
lacZ PRK09525
beta-galactosidase;
39-92 4.81e-28

beta-galactosidase;


Pssm-ID: 236548 [Multi-domain]  Cd Length: 1027  Bit Score: 105.40  E-value: 4.81e-28
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1049304929   39 RSLAVVLQRRDWENPGVTQLNRLAAHPPFASWRNSEEARTDRPSQQLRSLNGEW 92
Cdd:PRK09525     6 DSLAQILARRDWENPGVTQLNRLPAHPPFASWRNSEAARDDRPSQQRQSLNGEW 59
 
Name Accession Description Interval E-value
lacZ PRK09525
beta-galactosidase;
39-92 4.81e-28

beta-galactosidase;


Pssm-ID: 236548 [Multi-domain]  Cd Length: 1027  Bit Score: 105.40  E-value: 4.81e-28
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1049304929   39 RSLAVVLQRRDWENPGVTQLNRLAAHPPFASWRNSEEARTDRPSQQLRSLNGEW 92
Cdd:PRK09525     6 DSLAQILARRDWENPGVTQLNRLPAHPPFASWRNSEAARDDRPSQQRQSLNGEW 59
ebgA PRK10340
cryptic beta-D-galactosidase subunit alpha; Reviewed
 50-92 1.33e-04

cryptic beta-D-galactosidase subunit alpha; Reviewed


Pssm-ID: 236673 [Multi-domain]  Cd Length: 1021  Bit Score: 38.89  E-value: 1.33e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*
gi 1049304929   50 WENPGVTQLNRLAAHPPFASWRNSEEARTDRP--SQQLRSLNGEW 92
Cdd:PRK10340     4 WENIQLTHENRLAPRAYFFSYDSVAQARTFARetSSLFLLLSGQW 48
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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