NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1941610463|dbj|BCI50300|]
View 

hypothetical protein [Stx2a-converting phage Stx2_95]

Protein Classification

YdfR family protein( domain architecture ID 10537141)

YdfR family protein is a DUF1327 domain-containing protein; similar to Escherichia coli protein YdfR

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF1327 pfam07041
Protein of unknown function (DUF1327); This family consists of several hypothetical bacterial ...
 1-112 8.32e-71

Protein of unknown function (DUF1327); This family consists of several hypothetical bacterial proteins of around 115 residues in length which seem to be specific to Escherichia coli. The function of this family is unknown.


:

Pssm-ID: 311164  Cd Length: 113  Bit Score: 215.41  E-value: 8.32e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1941610463   1 MKKKYELVVKGINNYPDKITVTVALEIGGYPSLLLPDVAISLDRTEGATLEFYEAEAKKQAKQFFMDVAAGLCEGDGPLP 80
Cdd:pfam07041   1 MKKDYELVVKGINNFEDKITVTVALEDGERFDGEIFDLAIALDRTEGAALEFYEAAAKKQAKQFFLDVAAGLCEGDEKLP 80

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1941610463  81 EKRPIILEAQDVLITYRGKLPGRITGSLKTPP 112
Cdd:pfam07041  81 EKRESILEAQDVLITYRFKLPGIITGSIENPA 112
 
Name Accession Description Interval E-value
DUF1327 pfam07041
Protein of unknown function (DUF1327); This family consists of several hypothetical bacterial ...
 1-112 8.32e-71

Protein of unknown function (DUF1327); This family consists of several hypothetical bacterial proteins of around 115 residues in length which seem to be specific to Escherichia coli. The function of this family is unknown.


Pssm-ID: 311164  Cd Length: 113  Bit Score: 215.41  E-value: 8.32e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1941610463   1 MKKKYELVVKGINNYPDKITVTVALEIGGYPSLLLPDVAISLDRTEGATLEFYEAEAKKQAKQFFMDVAAGLCEGDGPLP 80
Cdd:pfam07041   1 MKKDYELVVKGINNFEDKITVTVALEDGERFDGEIFDLAIALDRTEGAALEFYEAAAKKQAKQFFLDVAAGLCEGDEKLP 80

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1941610463  81 EKRPIILEAQDVLITYRGKLPGRITGSLKTPP 112
Cdd:pfam07041  81 EKRESILEAQDVLITYRFKLPGIITGSIENPA 112
 
Name Accession Description Interval E-value
DUF1327 pfam07041
Protein of unknown function (DUF1327); This family consists of several hypothetical bacterial ...
 1-112 8.32e-71

Protein of unknown function (DUF1327); This family consists of several hypothetical bacterial proteins of around 115 residues in length which seem to be specific to Escherichia coli. The function of this family is unknown.


Pssm-ID: 311164  Cd Length: 113  Bit Score: 215.41  E-value: 8.32e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1941610463   1 MKKKYELVVKGINNYPDKITVTVALEIGGYPSLLLPDVAISLDRTEGATLEFYEAEAKKQAKQFFMDVAAGLCEGDGPLP 80
Cdd:pfam07041   1 MKKDYELVVKGINNFEDKITVTVALEDGERFDGEIFDLAIALDRTEGAALEFYEAAAKKQAKQFFLDVAAGLCEGDEKLP 80

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1941610463  81 EKRPIILEAQDVLITYRGKLPGRITGSLKTPP 112
Cdd:pfam07041  81 EKRESILEAQDVLITYRFKLPGIITGSIENPA 112
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH