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Conserved domains on  [gi|1952944158|dbj|BCP56425|]
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movement protein ORF4 [Cereal yellow dwarf virus RPS]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Luteo_Vpg super family cl03297
Luteovirus putative VPg genome linked protein; This family consists of several putative genome ...
 56-147 9.09e-27

Luteovirus putative VPg genome linked protein; This family consists of several putative genome linked proteins. The genomic RNA of luteoviruses are linked to virally encoded genome proteins (VPg). Open reading frame 4 is thought to encode the VPg in Soybean dwarf luteovirus. Luteoviruses have isometric capsids that contain a positive stand ssRNA genome, they have no DNA stage during their replication.


The actual alignment was detected with superfamily member pfam01659:

Pssm-ID: 279928  Cd Length: 105  Bit Score: 96.91  E-value: 9.09e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952944158  56 EAEAVARHSFSQRIRSQATPLEVSPSGRLYQSIRHSRMEYSRPTMNIRSQVVSYN-SSPRPLQPQPAPSLMSWTPIANHL 134
Cdd:pfam01659   5 DDEAGARHSCLQLTTLKATPKEQSNSAPVYQNAQHFQMEYSRPTISIRSQASEFSlSHARPLPIPPALSLLSSTPIAKNH 84

                          90
                  ....*....|...
gi 1952944158 135 HSHRQLTNSPSRK 147
Cdd:pfam01659  85 PSSATLIPSKLAR 97
 
Name Accession Description Interval E-value
Luteo_Vpg pfam01659
Luteovirus putative VPg genome linked protein; This family consists of several putative genome ...
 56-147 9.09e-27

Luteovirus putative VPg genome linked protein; This family consists of several putative genome linked proteins. The genomic RNA of luteoviruses are linked to virally encoded genome proteins (VPg). Open reading frame 4 is thought to encode the VPg in Soybean dwarf luteovirus. Luteoviruses have isometric capsids that contain a positive stand ssRNA genome, they have no DNA stage during their replication.


Pssm-ID: 279928  Cd Length: 105  Bit Score: 96.91  E-value: 9.09e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952944158  56 EAEAVARHSFSQRIRSQATPLEVSPSGRLYQSIRHSRMEYSRPTMNIRSQVVSYN-SSPRPLQPQPAPSLMSWTPIANHL 134
Cdd:pfam01659   5 DDEAGARHSCLQLTTLKATPKEQSNSAPVYQNAQHFQMEYSRPTISIRSQASEFSlSHARPLPIPPALSLLSSTPIAKNH 84

                          90
                  ....*....|...
gi 1952944158 135 HSHRQLTNSPSRK 147
Cdd:pfam01659  85 PSSATLIPSKLAR 97
Ubl_TmoB cd17042
Ubiquitin-like (Ubl) domain found in toluene-4-monooxygenase system protein B (TmoB); TmoB is ...
 30-82 2.64e-03

Ubiquitin-like (Ubl) domain found in toluene-4-monooxygenase system protein B (TmoB); TmoB is a component of the multicomponent toluene-4-monooxygenase (T4MO) system that metabolizes toluene as a carbon source. The T4MO complex is composed of a diiron hydroxylase (T4MOH), a Rieske-type ferredoxin (T4MOC), an effector protein (T4MOD), and an NADH oxidoreductase (T4MOF). The T4MOH component consists of TmoA, TmoB, and TmoE. TmoB adopts a beta-grasp ubiquitin-like fold but its precise role remains unclear.


Pssm-ID: 340562  Cd Length: 79  Bit Score: 34.97  E-value: 2.64e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1952944158  30 SLPVAQPGEEDAEDQLVLGEEE-LQDQEAEAVARHSFSQRIRSQATPLEVSPSG 82
Cdd:cd17042     1 LFPLVARFEGDFVVQLVAVDTEdTMDQVAEKVAYHSVGRRVAPRGAPLRVRHHG 54
 
Name Accession Description Interval E-value
Luteo_Vpg pfam01659
Luteovirus putative VPg genome linked protein; This family consists of several putative genome ...
 56-147 9.09e-27

Luteovirus putative VPg genome linked protein; This family consists of several putative genome linked proteins. The genomic RNA of luteoviruses are linked to virally encoded genome proteins (VPg). Open reading frame 4 is thought to encode the VPg in Soybean dwarf luteovirus. Luteoviruses have isometric capsids that contain a positive stand ssRNA genome, they have no DNA stage during their replication.


Pssm-ID: 279928  Cd Length: 105  Bit Score: 96.91  E-value: 9.09e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952944158  56 EAEAVARHSFSQRIRSQATPLEVSPSGRLYQSIRHSRMEYSRPTMNIRSQVVSYN-SSPRPLQPQPAPSLMSWTPIANHL 134
Cdd:pfam01659   5 DDEAGARHSCLQLTTLKATPKEQSNSAPVYQNAQHFQMEYSRPTISIRSQASEFSlSHARPLPIPPALSLLSSTPIAKNH 84

                          90
                  ....*....|...
gi 1952944158 135 HSHRQLTNSPSRK 147
Cdd:pfam01659  85 PSSATLIPSKLAR 97
Ubl_TmoB cd17042
Ubiquitin-like (Ubl) domain found in toluene-4-monooxygenase system protein B (TmoB); TmoB is ...
 30-82 2.64e-03

Ubiquitin-like (Ubl) domain found in toluene-4-monooxygenase system protein B (TmoB); TmoB is a component of the multicomponent toluene-4-monooxygenase (T4MO) system that metabolizes toluene as a carbon source. The T4MO complex is composed of a diiron hydroxylase (T4MOH), a Rieske-type ferredoxin (T4MOC), an effector protein (T4MOD), and an NADH oxidoreductase (T4MOF). The T4MOH component consists of TmoA, TmoB, and TmoE. TmoB adopts a beta-grasp ubiquitin-like fold but its precise role remains unclear.


Pssm-ID: 340562  Cd Length: 79  Bit Score: 34.97  E-value: 2.64e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1952944158  30 SLPVAQPGEEDAEDQLVLGEEE-LQDQEAEAVARHSFSQRIRSQATPLEVSPSG 82
Cdd:cd17042     1 LFPLVARFEGDFVVQLVAVDTEdTMDQVAEKVAYHSVGRRVAPRGAPLRVRHHG 54
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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