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Conserved domains on  [gi|2043683153|dbj|BCW03824|]
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cytochrome b (mitochondrion) [Hynobius utsunomiyaorum]

Protein Classification

cytochrome b( domain architecture ID 11475890)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00074
cytochrome b; Provisional
 1-380 0e+00

cytochrome b; Provisional


:

Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 749.59  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153   1 MAHPIRKTHPLIKIINGSFVDLPTPSNLSSLWNFGSLLGICLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVSYGWLM 80
Cdd:MTH00074    1 MAHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLM 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153  81 RNIHANGASFFFICIYMHIGRGLYYGSYMFKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDS 160
Cdd:MTH00074   81 RNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153 161 LVQWIWGGFSVDKATLTRFFAFHFLFPFLIAGASIIHLLFLHETGSNNPTGILSNMDKVPFHPYFSYKDALGFLIMLTAL 240
Cdd:MTH00074  161 LVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTAL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153 241 FTLSLLSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASIIILMLIPMIHTSKQRSLTFRP 320
Cdd:MTH00074  241 ALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRP 320

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153 321 VTQFLFWLVVSNTLILTWIGGQPVEQPFIEIGQAASILYFSLFLSIMPIMGWWENKLIKW 380
Cdd:MTH00074  321 LTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKLLKW 380
 
Name Accession Description Interval E-value
CYTB MTH00074
cytochrome b; Provisional
 1-380 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 749.59  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153   1 MAHPIRKTHPLIKIINGSFVDLPTPSNLSSLWNFGSLLGICLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVSYGWLM 80
Cdd:MTH00074    1 MAHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLM 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153  81 RNIHANGASFFFICIYMHIGRGLYYGSYMFKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDS 160
Cdd:MTH00074   81 RNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153 161 LVQWIWGGFSVDKATLTRFFAFHFLFPFLIAGASIIHLLFLHETGSNNPTGILSNMDKVPFHPYFSYKDALGFLIMLTAL 240
Cdd:MTH00074  161 LVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTAL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153 241 FTLSLLSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASIIILMLIPMIHTSKQRSLTFRP 320
Cdd:MTH00074  241 ALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRP 320

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153 321 VTQFLFWLVVSNTLILTWIGGQPVEQPFIEIGQAASILYFSLFLSIMPIMGWWENKLIKW 380
Cdd:MTH00074  321 LTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKLLKW 380
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
19-374 7.94e-118

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 347.16  E-value: 7.94e-118
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153  19 FVDLPTPSNLSSLWNFGSLLGICLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVSYGWLMRNIHANGASFFFICIYMH 98
Cdd:COG1290    27 HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLH 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153  99 IGRGLYYGSYmfKE----TWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDSLVQWIWGGFSVDKA 174
Cdd:COG1290   107 MFRGFFYGAY--KKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDA 184

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153 175 TLTRFFAF-HFLFPFLIAGASIIHLLFLHETGSNNPTGI----LSNMDKVPFHPYFSYKDALGFLIMLTALFTLSLLSPN 249
Cdd:COG1290   185 TLNRFFALhVLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI 264

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153 250 llGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIP--NKLGGVLALLASIIILMLIPMIHTSKQRSLTFRPVTQFLFW 327
Cdd:COG1290   265 --NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGV 342

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*..
gi 2043683153 328 LVVSNTLILTWIGGQPVeqPFIEIGQAASILYFSLFLSIMPIMGWWE 374
Cdd:COG1290   343 AFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-207 3.95e-84

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 254.22  E-value: 3.95e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153  10 PLIKIINGSFVDLPTPSNLSSLWNFGSLLGICLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVSYGWLMRNIHANGAS 89
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153  90 FFFICIYMHIGRGLYYGSYM--FKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDSLVQWIWG 167
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 2043683153 168 GFSVDKATLTRFFAFHFLFPFLIAGASIIHLLFLHETGSN 207
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 5.75e-78

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 238.05  E-value: 5.75e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153  19 FVDLPTPSNLSSLWNFGSLLGICLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVSYGWLMRNIHANGASFFFICIYMH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153  99 IGRGLYYG--SYMFKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDSLVQWIWGGFSVDKATL 176
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 2043683153 177 TRFFAFHFLFPFLIAGASIIHLLFLHETG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 243-297 8.87e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 54.03  E-value: 8.87e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2043683153 243 LSLLSPNLLGDPdnftpANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLA 297
Cdd:TIGR01156  54 LAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAA 103
 
Name Accession Description Interval E-value
CYTB MTH00074
cytochrome b; Provisional
 1-380 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 749.59  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153   1 MAHPIRKTHPLIKIINGSFVDLPTPSNLSSLWNFGSLLGICLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVSYGWLM 80
Cdd:MTH00074    1 MAHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLM 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153  81 RNIHANGASFFFICIYMHIGRGLYYGSYMFKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDS 160
Cdd:MTH00074   81 RNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153 161 LVQWIWGGFSVDKATLTRFFAFHFLFPFLIAGASIIHLLFLHETGSNNPTGILSNMDKVPFHPYFSYKDALGFLIMLTAL 240
Cdd:MTH00074  161 LVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTAL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153 241 FTLSLLSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASIIILMLIPMIHTSKQRSLTFRP 320
Cdd:MTH00074  241 ALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRP 320

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153 321 VTQFLFWLVVSNTLILTWIGGQPVEQPFIEIGQAASILYFSLFLSIMPIMGWWENKLIKW 380
Cdd:MTH00074  321 LTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKLLKW 380
CYTB MTH00131
cytochrome b; Provisional
 5-380 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 697.94  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153   5 IRKTHPLIKIINGSFVDLPTPSNLSSLWNFGSLLGICLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVSYGWLMRNIH 84
Cdd:MTH00131    4 LRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLH 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153  85 ANGASFFFICIYMHIGRGLYYGSYMFKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDSLVQW 164
Cdd:MTH00131   84 ANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQW 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153 165 IWGGFSVDKATLTRFFAFHFLFPFLIAGASIIHLLFLHETGSNNPTGILSNMDKVPFHPYFSYKDALGFLIMLTALFTLS 244
Cdd:MTH00131  164 IWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLA 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153 245 LLSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASIIILMLIPMIHTSKQRSLTFRPVTQF 324
Cdd:MTH00131  244 LFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQF 323

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2043683153 325 LFWLVVSNTLILTWIGGQPVEQPFIEIGQAASILYFSLFLSIMPIMGWWENKLIKW 380
Cdd:MTH00131  324 LFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALEW 379
CYTB MTH00119
cytochrome b; Provisional
 1-380 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 685.86  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153   1 MAHPIRKTHPLIKIINGSFVDLPTPSNLSSLWNFGSLLGICLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVSYGWLM 80
Cdd:MTH00119    1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153  81 RNIHANGASFFFICIYMHIGRGLYYGSYMFKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDS 160
Cdd:MTH00119   81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153 161 LVQWIWGGFSVDKATLTRFFAFHFLFPFLIAGASIIHLLFLHETGSNNPTGILSNMDKVPFHPYFSYKDALGFLIMLTAL 240
Cdd:MTH00119  161 LVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153 241 FTLSLLSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASIIILMLIPMIHTSKQRSLTFRP 320
Cdd:MTH00119  241 LTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRP 320

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153 321 VTQFLFWLVVSNTLILTWIGGQPVEQPFIEIGQAASILYFSLFLSIMPIMGWWENKLIKW 380
Cdd:MTH00119  321 LSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLNY 380
CYTB MTH00100
cytochrome b; Provisional
 4-380 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 668.27  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153   4 PIRKTHPLIKIINGSFVDLPTPSNLSSLWNFGSLLGICLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVSYGWLMRNI 83
Cdd:MTH00100    3 NIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153  84 HANGASFFFICIYMHIGRGLYYGSYMFKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDSLVQ 163
Cdd:MTH00100   83 HANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153 164 WIWGGFSVDKATLTRFFAFHFLFPFLIAGASIIHLLFLHETGSNNPTGILSNMDKVPFHPYFSYKDALGFLIMLTALFTL 243
Cdd:MTH00100  163 WIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLL 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153 244 SLLSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASIIILMLIPMIHTSKQRSLTFRPVTQ 323
Cdd:MTH00100  243 VLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQ 322

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2043683153 324 FLFWLVVSNTLILTWIGGQPVEQPFIEIGQAASILYFSLFLSIMPIMGWWENKLIKW 380
Cdd:MTH00100  323 CLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLKW 379
CYTB MTH00191
cytochrome b; Provisional
 5-369 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 639.27  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153   5 IRKTHPLIKIINGSFVDLPTPSNLSSLWNFGSLLGICLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVSYGWLMRNIH 84
Cdd:MTH00191    1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153  85 ANGASFFFICIYMHIGRGLYYGSYMFKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDSLVQW 164
Cdd:MTH00191   81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153 165 IWGGFSVDKATLTRFFAFHFLFPFLIAGASIIHLLFLHETGSNNPTGILSNMDKVPFHPYFSYKDALGFLIMLTALFTLS 244
Cdd:MTH00191  161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLV 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153 245 LLSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASIIILMLIPMIHTSKQRSLTFRPVTQF 324
Cdd:MTH00191  241 LFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQV 320

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*
gi 2043683153 325 LFWLVVSNTLILTWIGGQPVEQPFIEIGQAASILYFSLFLSIMPI 369
Cdd:MTH00191  321 VFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFPL 365
CYTB MTH00034
cytochrome b; Validated
 4-378 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 610.55  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153   4 PIRKTHPLIKIINGSFVDLPTPSNLSSLWNFGSLLGICLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVSYGWLMRNI 83
Cdd:MTH00034    3 PLRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNI 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153  84 HANGASFFFICIYMHIGRGLYYGSYMFKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDSLVQ 163
Cdd:MTH00034   83 HANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQ 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153 164 WIWGGFSVDKATLTRFFAFHFLFPFLIAGASIIHLLFLHETGSNNPTGILSNMDKVPFHPYFSYKDALGFLIMLTALFTL 243
Cdd:MTH00034  163 WIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSL 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153 244 SLLSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASIIILMLIPMIHTSKQRSLTFRPVTQ 323
Cdd:MTH00034  243 ALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQ 322

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2043683153 324 FLFWLVVSNTLILTWIGGQPVEQPFIEIGQAASILYFSLFLSIMPIMGWWENKLI 378
Cdd:MTH00034  323 IAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLENKLI 377
CYTB MTH00156
cytochrome b; Provisional
 12-364 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 601.39  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153  12 IKIINGSFVDLPTPSNLSSLWNFGSLLGICLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVSYGWLMRNIHANGASFF 91
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153  92 FICIYMHIGRGLYYGSYMFKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDSLVQWIWGGFSV 171
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153 172 DKATLTRFFAFHFLFPFLIAGASIIHLLFLHETGSNNPTGILSNMDKVPFHPYFSYKDALGFLIMLTALFTLSLLSPNLL 251
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153 252 GDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASIIILMLIPMIHTSKQRSLTFRPVTQFLFWLVVS 331
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                         330       340       350
                  ....*....|....*....|....*....|...
gi 2043683153 332 NTLILTWIGGQPVEQPFIEIGQAASILYFSLFL 364
Cdd:MTH00156  321 IVILLTWIGARPVEEPYILTGQILTILYFLYFI 353
CYTB MTH00145
cytochrome b; Provisional
 1-378 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 587.26  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153   1 MAHPIRKTHPLIKIINGSFVDLPTPSNLSSLWNFGSLLGICLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVSYGWLM 80
Cdd:MTH00145    1 MLSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153  81 RNIHANGASFFFICIYMHIGRGLYYGSYMFKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDS 160
Cdd:MTH00145   81 RSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKM 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153 161 LVQWIWGGFSVDKATLTRFFAFHFLFPFLIAGASIIHLLFLHETGSNNPTGILSNMDKVPFHPYFSYKDALGFLIMLTAL 240
Cdd:MTH00145  161 LVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153 241 FTLSLLSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASIIILMLIPMIHTSKQRSLTFRP 320
Cdd:MTH00145  241 VFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2043683153 321 VTQFLFWLVVSNTLILTWIGGQPVEQPFIEIGQAASILYFSLFLsIMPIMGWWENKLI 378
Cdd:MTH00145  321 LNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFL-ILPLVQKLWDNIL 377
CYTB MTH00016
cytochrome b; Validated
 1-375 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 559.29  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153   1 MAHPIRKTHPLIKIINGSFVDLPTPSNLSSLWNFGSLLGICLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVSYGWLM 80
Cdd:MTH00016    1 MFSPMRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153  81 RNIHANGASFFFICIYMHIGRGLYYGSYMFKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDS 160
Cdd:MTH00016   81 RNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKM 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153 161 LVQWIWGGFSVDKATLTRFFAFHFLFPFLIAGASIIHLLFLHETGSNNPTGILSNMDKVPFHPYFSYKDALGFLIMLTAL 240
Cdd:MTH00016  161 LVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153 241 FTLSLLSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASIIILMLIPMIHTSKQRSLTFRP 320
Cdd:MTH00016  241 LSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2043683153 321 VTQFLFWLVVSNTLILTWIGGQPVEQPFIEIGQAASILYFSLFLSIMPIMGWWEN 375
Cdd:MTH00016  321 LNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMINPLLMKLWDK 375
CYTB MTH00022
cytochrome b; Validated
 4-379 0e+00

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 511.94  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153   4 PIRKTHPLIKIINGSFVDLPTPSNLSSLWNFGSLLGICLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVSYGWLMRNI 83
Cdd:MTH00022    2 PLRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153  84 HANGASFFFICIYMHIGRGLYYGSYMFKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDSLVQ 163
Cdd:MTH00022   82 HANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQ 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153 164 WIWGGFSVDKATLTRFFAFHFLFPFLIAGASIIHLLFLHETGSNNPTGILSNMDKVPFHPYFSYKDALGFLIMLTALFTL 243
Cdd:MTH00022  162 WVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFI 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153 244 SLLSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASIIILMLIPMIHTSKQRSLTFRPVTQ 323
Cdd:MTH00022  242 VYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGR 321

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2043683153 324 FLFWLVVSNTLILTWIGGQPVEQPFIEIGQAASILYFSLFLSIMPIMGWWENKLIK 379
Cdd:MTH00022  322 MAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQLLF 377
CYTB MTH00053
cytochrome b; Provisional
 1-379 1.11e-178

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 501.54  E-value: 1.11e-178
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153   1 MAHPIRKTHPLIKIINGSFVDLPTPSNLSSLWNFGSLLGICLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVSYGWLM 80
Cdd:MTH00053    1 MTKTIRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFIL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153  81 RNIHANGASFFFICIYMHIGRGLYYGSYMFKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDS 160
Cdd:MTH00053   81 RYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDD 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153 161 LVQWIWGGFSVDKATLTRFFAFHFLFPFLIAGASIIHLLFLHETGSNNPTGILSNMDKVPFHPYFSYKDALGFLIMLTAL 240
Cdd:MTH00053  161 IVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIIL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153 241 FTLSLLSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASIIILMLIPMIHTSKQRSLTFRP 320
Cdd:MTH00053  241 SIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2043683153 321 VTQFLFWLVVSNTLILTWIGGQPVEQPFIEIGQAASILYFSLFLSIMPIMGWWENKLIK 379
Cdd:MTH00053  321 LSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKLLK 379
CYTB MTH00224
cytochrome b; Provisional
 1-378 5.00e-175

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 492.13  E-value: 5.00e-175
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153   1 MAHPIRKTHPLIKIINGSFVDLPTPSNLSSLWNFGSLLGICLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVSYGWLM 80
Cdd:MTH00224    1 MFKPFRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153  81 RNIHANGASFFFICIYMHIGRGLYYGSYMFKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDS 160
Cdd:MTH00224   81 RSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKD 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153 161 LVQWIWGGFSVDKATLTRFFAFHFLFPFLIAGASIIHLLFLHETGSNNPTGILSNMDKVPFHPYFSYKDALGFLIMLTAL 240
Cdd:MTH00224  161 LVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153 241 FTLSLLSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASIIILMLIPMIHTSKQRSLTFRP 320
Cdd:MTH00224  241 SLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2043683153 321 VTQFLFWLVVSNTLILTWIGGQPVEQPFIEIGQAASILYFSLFLSIMPIMGWWENKLI 378
Cdd:MTH00224  321 LNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYFIISPAISKLWDDLLN 378
CYTB MTH00033
cytochrome b; Provisional
 5-375 3.15e-132

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 383.52  E-value: 3.15e-132
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153   5 IRKTHpLIKIINGsFVDLPTPSNLSSLWNFGSLLGICLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVSYGWLMRNIH 84
Cdd:MTH00033    3 LRKTG-LLEPVND-IIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153  85 ANGASFFFICIYMHIGRGLYYGSYMFKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDSLVQW 164
Cdd:MTH00033   81 ANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEW 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153 165 IWGGFSVDKATLTRFFAFHFLFPFLIAGASIIHLLFLHETGSNNPTGILSNMDKVPFHPYFSYKDALGFLIMLTALFTLS 244
Cdd:MTH00033  161 IWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIG 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153 245 LLS--PNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASIIILMLIPMIHTSKQRSLTFRPVT 322
Cdd:MTH00033  241 IEPriETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTG 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2043683153 323 QFLFWLVVSNTLILTWIGGQPV-EQPFIEIGQAASILYFSLFLSIMPIMGWWEN 375
Cdd:MTH00033  321 KFFFWFIVGDFIILTWIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYLSN 374
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
19-374 7.94e-118

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 347.16  E-value: 7.94e-118
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153  19 FVDLPTPSNLSSLWNFGSLLGICLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVSYGWLMRNIHANGASFFFICIYMH 98
Cdd:COG1290    27 HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLH 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153  99 IGRGLYYGSYmfKE----TWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDSLVQWIWGGFSVDKA 174
Cdd:COG1290   107 MFRGFFYGAY--KKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDA 184

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153 175 TLTRFFAF-HFLFPFLIAGASIIHLLFLHETGSNNPTGI----LSNMDKVPFHPYFSYKDALGFLIMLTALFTLSLLSPN 249
Cdd:COG1290   185 TLNRFFALhVLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI 264

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153 250 llGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIP--NKLGGVLALLASIIILMLIPMIHTSKQRSLTFRPVTQFLFW 327
Cdd:COG1290   265 --NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGV 342

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*..
gi 2043683153 328 LVVSNTLILTWIGGQPVeqPFIEIGQAASILYFSLFLSIMPIMGWWE 374
Cdd:COG1290   343 AFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
CYTB MTH00086
cytochrome b; Provisional
 13-367 1.86e-115

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 339.99  E-value: 1.86e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153  13 KIINGSFVDLPTPSNLSSLWNFGSLLGICLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVSYGWLMRNIHANGASFFF 92
Cdd:MTH00086    1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153  93 ICIYMHIGRGLYYGSYMFKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDSLVQWIWGGFSVD 172
Cdd:MTH00086   81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153 173 KATLTRFFAFHFLFPFLIAGASIIHLLFLHETGSNNPTGILSNMDKVPFHPYFSYKDALGFLIMLTaLFTLSLLSPNLLG 252
Cdd:MTH00086  161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWLV-FIIFSLFYPFNLG 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153 253 DPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASIIILMLIPMIHTSKQrslTFRPVTQFLFWLVVSN 332
Cdd:MTH00086  240 DPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNYTS---CLNKLNKFLVFSFIVV 316

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 2043683153 333 TLILTWIGGQPVEQPFIEIGQAASILYFSLFLSIM 367
Cdd:MTH00086  317 NVILSWLGQCLVEYPFLFLSQIFSFIYFFLILLML 351
CYTB MTH00046
cytochrome b; Validated
 11-358 3.60e-87

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 267.62  E-value: 3.60e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153  11 LIKIINGSFVDLPTPSNLSSLWNFGSLLGICLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVSYGWLMRNIHANGASF 90
Cdd:MTH00046    1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153  91 FFICIYMHIGRGLYYGSYMFKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDSLVQWIWGGFS 170
Cdd:MTH00046   81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153 171 VDKATLTRFFAFHFLFPFLIAGASIIHLLFLHETGSNNPTGILSNM-DKVPFHPYFSYKDALGFLIMLTALFTLSLLSPN 249
Cdd:MTH00046  161 VTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGYsDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPD 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153 250 LLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGvLALLASIIILMLIPMIHTSKQRSLtfrpVTQFLFWLV 329
Cdd:MTH00046  241 LVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG-LVLVLSFLFFLWVPTFNGSSVYSV----WRQVNFWLI 315

                         330       340
                  ....*....|....*....|....*....
gi 2043683153 330 VSNTLILTWIGGQPVEQPFIEIGQAASIL 358
Cdd:MTH00046  316 VSLFFSLSYLGGCHPEYPYLLISQLFSVL 344
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-207 3.95e-84

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 254.22  E-value: 3.95e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153  10 PLIKIINGSFVDLPTPSNLSSLWNFGSLLGICLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVSYGWLMRNIHANGAS 89
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153  90 FFFICIYMHIGRGLYYGSYM--FKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDSLVQWIWG 167
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 2043683153 168 GFSVDKATLTRFFAFHFLFPFLIAGASIIHLLFLHETGSN 207
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 5.75e-78

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 238.05  E-value: 5.75e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153  19 FVDLPTPSNLSSLWNFGSLLGICLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVSYGWLMRNIHANGASFFFICIYMH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153  99 IGRGLYYG--SYMFKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDSLVQWIWGGFSVDKATL 176
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 2043683153 177 TRFFAFHFLFPFLIAGASIIHLLFLHETG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 208-355 1.18e-47

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 158.96  E-value: 1.18e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153 208 NPTGILSNMDKVPFHPYFSYKDALGFLIMLTALFTLSLLSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPN 287
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2043683153 288 KLGGVLALLASIIILMLIPMIHTSKQRSlTFRPVTQFLFWLVVSNTLILTWIGGQPVEQPFIEIGQAA 355
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
89-254 6.17e-41

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 142.00  E-value: 6.17e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153  89 SFFFICIYMHIGRGLYYGSYMFKE--TWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDSLVQWIW 166
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153 167 GGFSVDKATLTRFFAF-HFLFPFLIAGASIIHLLFLHETGSNNPTGILSNMDKVPFHPYFSYKDALGFLIMLTALFTLSL 245
Cdd:pfam13631  81 GGPFPGTATIPRFYALhILLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 2043683153 246 LSPNLLGDP 254
Cdd:pfam13631 161 INPIWLGGP 169
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
259-359 1.37e-39

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 136.07  E-value: 1.37e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153 259 PANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASIIILMLIPMIHTSKQRSLTFRPVTQFLFWLVVSNTLILTW 338
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 2043683153 339 IGGQPVEQPFIEIGQAASILY 359
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
PRK03735 PRK03735
cytochrome b6; Provisional
 34-178 3.01e-30

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 115.58  E-value: 3.01e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153  34 FGSLLGICLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVSYGWLMRNIHANGASFFFICIYMHIGRGLYYGSYMFKE- 112
Cdd:PRK03735   44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2043683153 113 -TWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDSLVQWIWGGFSVDKATLTR 178
Cdd:PRK03735  124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTR 190
petB CHL00070
cytochrome b6
 25-209 2.43e-25

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 102.11  E-value: 2.43e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153  25 PSNLSSLWNFGSLLGICLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVSYGWLMRNIHANGASFFFICIYMHIGRGLY 104
Cdd:CHL00070   27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043683153 105 YGSymFKE----TWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDSLVQWIWGGFSVDKATLTRFF 180
Cdd:CHL00070  107 TGG--FKKprelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFY 184

                         170       180       190
                  ....*....|....*....|....*....|
gi 2043683153 181 AFHFLFPFLIAGASII-HLLFLHETGSNNP 209
Cdd:CHL00070  185 SLHTFVLPLLTAVFMLmHFLMIRKQGISGP 214
petD CHL00058
cytochrome b6/f complex subunit IV
 243-297 4.34e-10

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 57.70  E-value: 4.34e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2043683153 243 LSLLSPNLLGDPdnftpANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLA 297
Cdd:CHL00058   54 LAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMAS 103
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 243-297 1.80e-09

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 56.34  E-value: 1.80e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2043683153 243 LSLLSPNLLGDPdnftpANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLA 297
Cdd:COG5679    55 LAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAA 104
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 243-297 8.87e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 54.03  E-value: 8.87e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2043683153 243 LSLLSPNLLGDPdnftpANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLA 297
Cdd:TIGR01156  54 LAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAA 103
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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