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Conserved domains on  [gi|2475333194|dbj|BDQ29889|]
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capsanthin/capsorubin synthase [Expression vector S/sC/sZ]

Protein Classification

lycopene cyclase family protein( domain architecture ID 10010798)

lycopene cyclase family protein similar to chloroplastic lycopene beta cyclase, capsanthin/capsorubin synthase, neoxanthin synthase

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN02463 PLN02463
lycopene beta cyclase
 36-480 0e+00

lycopene beta cyclase


:

Pssm-ID: 178082 [Multi-domain]  Cd Length: 447  Bit Score: 776.20  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2475333194  36 SFLDLAPTSKPESLDVNISWVDTDLDGAeFDVIIIGTGPAGLRLAEQVSKYGIKVCCVDPSPLSMWPNNYGVWVDEFEKL 115
Cdd:PLN02463    1 ALLELVPETKKENLDFELPRFDPSKSRV-VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEAL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2475333194 116 GLEDCLDHKWPVSCVHISDHKTKYLDRPYGRVSRKKLKLKLLNSCVENRVKFYKAKVLKVKHEEFESSIVCDDGRKISGS 195
Cdd:PLN02463   80 GLLDCLDTTWPGAVVYIDDGKKKDLDRPYGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQAS 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2475333194 196 LIVDASGYASDFIEYDKPRNHGYQVAHGILAEVDNHPFDLDKMMLMDWRDSHLGNEPYLRVKNTKEPTFLYAMPFDRNLV 275
Cdd:PLN02463  160 LVLDATGFSRCLVQYDKPFNPGYQVAYGILAEVDSHPFDLDKMLFMDWRDSHLGNNPELRARNSKLPTFLYAMPFSSNRI 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2475333194 276 FLEETSLVSRPMLSYMEVKRRMVARLRHLGIKVRSVLEEEKCVITMGGPLPRIPQNVMAIGGTSGIVHPSSGYMVARSMA 355
Cdd:PLN02463  240 FLEETSLVARPGLPMDDIQERMVARLRHLGIKVKSVEEDEKCVIPMGGPLPVIPQRVLGIGGTAGMVHPSTGYMVARTLA 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2475333194 356 LAPVLAEAIVESLGSTRM--IRGSQLYHRVWNGLWPSDRRRVRECYCFGMETLLKLDLEGTRRLFDAFFDVDPKYWHGFL 433
Cdd:PLN02463  320 AAPIVADAIVEYLGSSRSnsFRGDELSAEVWNDLWPIERRRQREFFCFGMDILLKLDLDGTRRFFDAFFDLEPHYWHGFL 399

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*..
gi 2475333194 434 SSRLSVKELAVLSLYLFGHASNLARLDIVTKCTVPLVKLLGNLAIES 480
Cdd:PLN02463  400 SSRLFLPELLLFGLSLFSHASNTSRLEIMAKGTVPLVKMINNLIQDR 446
 
Name Accession Description Interval E-value
PLN02463 PLN02463
lycopene beta cyclase
 36-480 0e+00

lycopene beta cyclase


Pssm-ID: 178082 [Multi-domain]  Cd Length: 447  Bit Score: 776.20  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2475333194  36 SFLDLAPTSKPESLDVNISWVDTDLDGAeFDVIIIGTGPAGLRLAEQVSKYGIKVCCVDPSPLSMWPNNYGVWVDEFEKL 115
Cdd:PLN02463    1 ALLELVPETKKENLDFELPRFDPSKSRV-VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEAL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2475333194 116 GLEDCLDHKWPVSCVHISDHKTKYLDRPYGRVSRKKLKLKLLNSCVENRVKFYKAKVLKVKHEEFESSIVCDDGRKISGS 195
Cdd:PLN02463   80 GLLDCLDTTWPGAVVYIDDGKKKDLDRPYGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQAS 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2475333194 196 LIVDASGYASDFIEYDKPRNHGYQVAHGILAEVDNHPFDLDKMMLMDWRDSHLGNEPYLRVKNTKEPTFLYAMPFDRNLV 275
Cdd:PLN02463  160 LVLDATGFSRCLVQYDKPFNPGYQVAYGILAEVDSHPFDLDKMLFMDWRDSHLGNNPELRARNSKLPTFLYAMPFSSNRI 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2475333194 276 FLEETSLVSRPMLSYMEVKRRMVARLRHLGIKVRSVLEEEKCVITMGGPLPRIPQNVMAIGGTSGIVHPSSGYMVARSMA 355
Cdd:PLN02463  240 FLEETSLVARPGLPMDDIQERMVARLRHLGIKVKSVEEDEKCVIPMGGPLPVIPQRVLGIGGTAGMVHPSTGYMVARTLA 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2475333194 356 LAPVLAEAIVESLGSTRM--IRGSQLYHRVWNGLWPSDRRRVRECYCFGMETLLKLDLEGTRRLFDAFFDVDPKYWHGFL 433
Cdd:PLN02463  320 AAPIVADAIVEYLGSSRSnsFRGDELSAEVWNDLWPIERRRQREFFCFGMDILLKLDLDGTRRFFDAFFDLEPHYWHGFL 399

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*..
gi 2475333194 434 SSRLSVKELAVLSLYLFGHASNLARLDIVTKCTVPLVKLLGNLAIES 480
Cdd:PLN02463  400 SSRLFLPELLLFGLSLFSHASNTSRLEIMAKGTVPLVKMINNLIQDR 446
Lycopene_cycl pfam05834
Lycopene cyclase protein; This family consists of lycopene beta and epsilon cyclase proteins. ...
 66-459 1.82e-175

Lycopene cyclase protein; This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclization of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare.


Pssm-ID: 310433 [Multi-domain]  Cd Length: 380  Bit Score: 497.33  E-value: 1.82e-175
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2475333194  66 DVIIIGTGPAGLRLAEQV--SKYGIKVCCVDPSPLSMWPNNYgVWVDEFEKLG-LEDCLDHKWPVSCVHISDHKTKYLDR 142
Cdd:pfam05834   1 DVVIIGAGPAGLSLAARLaaAKPGLSVVLIEPGPSLLRPNNY-VWSDEFEDLGaLEDCVGHSWPGTRVHFDDGKPILIGR 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2475333194 143 PYGRVSRKKLKLKLLNSCVENRVKFYKAKVLKVKHEEF-ESSIVCDDGRKISGSLIVDASGYASDfieyDKPRNHGYQVA 221
Cdd:pfam05834  80 AYGRVSSKRLEEEMLQRCVENGVIRLNAKVESVEADPVgESLVVCEGGRTIRARLVFDARGLGSL----PPGRTLGYQTF 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2475333194 222 HGILAEVDNHPFDLDKMMLMDWRdshlgNEPYLrvkntKEPTFLYAMPFDRNLVFLEETSLVSRPMLSYMEVKRRMVARL 301
Cdd:pfam05834 156 YGVEVEVDNPPFDPDVMVLMDAR-----VPQPL-----KGPTFLYALPLDPDRLLVEETYLSSGPVLPFDALKKRLAAYL 225

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2475333194 302 RHLGIKVRSVLEEEKCVITM--GGPLPRIPQNVMAIGGTSGIVHPSSGYMVARSMALAPVLAEAIVESLGStrmirgSQL 379
Cdd:pfam05834 226 RALGIRILEVVEEEQGVIPMtlGGDLPNTPQKVLRIGAAAGMVHPATGYSVARSLRLAPKLASAIAAALRL------SSP 299

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2475333194 380 YHRVWNGLWPSDRRRVRECY-CFGMETLLKLDLEGTRRLFDAFFDVDPKYWHGFLSSRLSVKELAVLSLYLFGHASNLAR 458
Cdd:pfam05834 300 SARAWRDLWPRERWRQRGFFrLLGRMLFLALDIEGRRRFFDAFFRLPKELWQRFLASRLSLADLLRIGLHTPVIPMNRAR 379


                  .
gi 2475333194 459 L 459
Cdd:pfam05834 380 A 380
carotene-cycl TIGR01790
lycopene cyclase family protein; This family includes lycopene beta and epsilion cyclases ...
 66-461 5.40e-139

lycopene cyclase family protein; This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.


Pssm-ID: 130850 [Multi-domain]  Cd Length: 388  Bit Score: 404.89  E-value: 5.40e-139
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2475333194  66 DVIIIGTGPAGLRLAEQVSKYGIKVCCVDPSPLSMWPNNYGVWVDEFEKLGLEDCLDHKWPVSCVHISDHKTKYLDRPYG 145
Cdd:TIGR01790   1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2475333194 146 RVSRKKLKLKLLNSCVENRVKFYKAKVLKVKHEEFESSIV-CDDGRKISGSLIVDASGYASDFIEYDKPRNHGYQVAHGI 224
Cdd:TIGR01790  81 SVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVyCAGGQRIQARLVIDARGFGPLVQYVRFPLNVGFQVAYGV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2475333194 225 LAEVDNHPFDLDKMMLMDWRDSHLgNEPYLRvknTKEPTFLYAMPFDRNLVFLEETSLVSRPMLSYMEVKRRMVARLRHL 304
Cdd:TIGR01790 161 EARLSRPPHGPSSMVIMDARVDQL-AAPELK---GYRPTFLYAMPLGSTRVFIEETSLADRPALPRDRLRQRILARLNAQ 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2475333194 305 GIKVRSVLEEEKCVITMGGPLPRIPQNVMAIGGTSGIVHPSSGYMVARSMALAPVLAEAIVESLGSTrmirgSQLYHRVW 384
Cdd:TIGR01790 237 GWQIKTIEEEEWGALPVGLPGPFLPQRVAAFGAAAGMVHPTTGYSVARALSDAPGLAAAIAQALCQS-----SELATAAW 311

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2475333194 385 NGLWPSDRRRVRECYCFGMETLLKLDLEGTRRLFDAFFDVDPKYWHGFLSSRLSVKELAVLSLYLFGHASNLARLDI 461
Cdd:TIGR01790 312 DGLWPTERRRQRYFRLLGRMLFLALEPEERRRFFQRFFGLPEELWERFLAARLSLPDLLRVLLRMFGQPPNPVRSAL 388
FixC COG0644
Dehydrogenase (flavoprotein) [Energy production and conversion];
73-390 1.99e-10

Dehydrogenase (flavoprotein) [Energy production and conversion];


Pssm-ID: 440409 [Multi-domain]  Cd Length: 281  Bit Score: 61.52  E-value: 1.99e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2475333194  73 GPAGLRLAEQVSKYGIKVCCVDPSPLSMWPNNYGV----WVDEFEKLGLEDCLDHKWPVSCVHISDHKTKYLDRPYGR-- 146
Cdd:COG0644     2 GPAGSAAARRLARAGLSVLLLEKGSFPGDKICGGGllprALEELEPLGLDEPLERPVRGARFYSPGGKSVELPPGRGGgy 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2475333194 147 -VSRKKLKLKLLNSCVENRVKFY-KAKVLKVKHEEFESSIVCDDGRKISGSLIVDASGYAS-----DFIEYDKPRNHGYQ 219
Cdd:COG0644    82 vVDRARFDRWLAEQAEEAGAEVRtGTRVTDVLRDDGRVVVRTGDGEEIRADYVVDADGARSllarkLGLKRRSDEPQDYA 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2475333194 220 VA-HGILAEVDNHPFDLDKMMLMDWRDSHLGnepYLrvkntkeptFLYamPFDRNLVfleetslvsrpmlsymevkrrmv 298
Cdd:COG0644   162 LAiKEHWELPPLEGVDPGAVEFFFGEGAPGG---YG---------WVF--PLGDGRV----------------------- 204

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2475333194 299 arlrHLGikvrsvleeekcvITMGGPLPRIP-QNVMAIGGTSGIVHPSSGYMVARSMALAPVLAEAIVESLGSTRMIRGS 377
Cdd:COG0644   205 ----SVG-------------IPLGGPRPRLVgDGVLLVGDAAGFVDPLTGEGIHLAMKSGRLAAEAIAEALEGGDFSAEA 267

                         330
                  ....*....|....
gi 2475333194 378 -QLYHRVWNGLWPS 390
Cdd:COG0644   268 lAEYERRLRELLKA 281
 
Name Accession Description Interval E-value
PLN02463 PLN02463
lycopene beta cyclase
 36-480 0e+00

lycopene beta cyclase


Pssm-ID: 178082 [Multi-domain]  Cd Length: 447  Bit Score: 776.20  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2475333194  36 SFLDLAPTSKPESLDVNISWVDTDLDGAeFDVIIIGTGPAGLRLAEQVSKYGIKVCCVDPSPLSMWPNNYGVWVDEFEKL 115
Cdd:PLN02463    1 ALLELVPETKKENLDFELPRFDPSKSRV-VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEAL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2475333194 116 GLEDCLDHKWPVSCVHISDHKTKYLDRPYGRVSRKKLKLKLLNSCVENRVKFYKAKVLKVKHEEFESSIVCDDGRKISGS 195
Cdd:PLN02463   80 GLLDCLDTTWPGAVVYIDDGKKKDLDRPYGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQAS 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2475333194 196 LIVDASGYASDFIEYDKPRNHGYQVAHGILAEVDNHPFDLDKMMLMDWRDSHLGNEPYLRVKNTKEPTFLYAMPFDRNLV 275
Cdd:PLN02463  160 LVLDATGFSRCLVQYDKPFNPGYQVAYGILAEVDSHPFDLDKMLFMDWRDSHLGNNPELRARNSKLPTFLYAMPFSSNRI 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2475333194 276 FLEETSLVSRPMLSYMEVKRRMVARLRHLGIKVRSVLEEEKCVITMGGPLPRIPQNVMAIGGTSGIVHPSSGYMVARSMA 355
Cdd:PLN02463  240 FLEETSLVARPGLPMDDIQERMVARLRHLGIKVKSVEEDEKCVIPMGGPLPVIPQRVLGIGGTAGMVHPSTGYMVARTLA 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2475333194 356 LAPVLAEAIVESLGSTRM--IRGSQLYHRVWNGLWPSDRRRVRECYCFGMETLLKLDLEGTRRLFDAFFDVDPKYWHGFL 433
Cdd:PLN02463  320 AAPIVADAIVEYLGSSRSnsFRGDELSAEVWNDLWPIERRRQREFFCFGMDILLKLDLDGTRRFFDAFFDLEPHYWHGFL 399

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*..
gi 2475333194 434 SSRLSVKELAVLSLYLFGHASNLARLDIVTKCTVPLVKLLGNLAIES 480
Cdd:PLN02463  400 SSRLFLPELLLFGLSLFSHASNTSRLEIMAKGTVPLVKMINNLIQDR 446
Lycopene_cycl pfam05834
Lycopene cyclase protein; This family consists of lycopene beta and epsilon cyclase proteins. ...
 66-459 1.82e-175

Lycopene cyclase protein; This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclization of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare.


Pssm-ID: 310433 [Multi-domain]  Cd Length: 380  Bit Score: 497.33  E-value: 1.82e-175
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2475333194  66 DVIIIGTGPAGLRLAEQV--SKYGIKVCCVDPSPLSMWPNNYgVWVDEFEKLG-LEDCLDHKWPVSCVHISDHKTKYLDR 142
Cdd:pfam05834   1 DVVIIGAGPAGLSLAARLaaAKPGLSVVLIEPGPSLLRPNNY-VWSDEFEDLGaLEDCVGHSWPGTRVHFDDGKPILIGR 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2475333194 143 PYGRVSRKKLKLKLLNSCVENRVKFYKAKVLKVKHEEF-ESSIVCDDGRKISGSLIVDASGYASDfieyDKPRNHGYQVA 221
Cdd:pfam05834  80 AYGRVSSKRLEEEMLQRCVENGVIRLNAKVESVEADPVgESLVVCEGGRTIRARLVFDARGLGSL----PPGRTLGYQTF 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2475333194 222 HGILAEVDNHPFDLDKMMLMDWRdshlgNEPYLrvkntKEPTFLYAMPFDRNLVFLEETSLVSRPMLSYMEVKRRMVARL 301
Cdd:pfam05834 156 YGVEVEVDNPPFDPDVMVLMDAR-----VPQPL-----KGPTFLYALPLDPDRLLVEETYLSSGPVLPFDALKKRLAAYL 225

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2475333194 302 RHLGIKVRSVLEEEKCVITM--GGPLPRIPQNVMAIGGTSGIVHPSSGYMVARSMALAPVLAEAIVESLGStrmirgSQL 379
Cdd:pfam05834 226 RALGIRILEVVEEEQGVIPMtlGGDLPNTPQKVLRIGAAAGMVHPATGYSVARSLRLAPKLASAIAAALRL------SSP 299

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2475333194 380 YHRVWNGLWPSDRRRVRECY-CFGMETLLKLDLEGTRRLFDAFFDVDPKYWHGFLSSRLSVKELAVLSLYLFGHASNLAR 458
Cdd:pfam05834 300 SARAWRDLWPRERWRQRGFFrLLGRMLFLALDIEGRRRFFDAFFRLPKELWQRFLASRLSLADLLRIGLHTPVIPMNRAR 379


                  .
gi 2475333194 459 L 459
Cdd:pfam05834 380 A 380
carotene-cycl TIGR01790
lycopene cyclase family protein; This family includes lycopene beta and epsilion cyclases ...
 66-461 5.40e-139

lycopene cyclase family protein; This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.


Pssm-ID: 130850 [Multi-domain]  Cd Length: 388  Bit Score: 404.89  E-value: 5.40e-139
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2475333194  66 DVIIIGTGPAGLRLAEQVSKYGIKVCCVDPSPLSMWPNNYGVWVDEFEKLGLEDCLDHKWPVSCVHISDHKTKYLDRPYG 145
Cdd:TIGR01790   1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2475333194 146 RVSRKKLKLKLLNSCVENRVKFYKAKVLKVKHEEFESSIV-CDDGRKISGSLIVDASGYASDFIEYDKPRNHGYQVAHGI 224
Cdd:TIGR01790  81 SVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVyCAGGQRIQARLVIDARGFGPLVQYVRFPLNVGFQVAYGV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2475333194 225 LAEVDNHPFDLDKMMLMDWRDSHLgNEPYLRvknTKEPTFLYAMPFDRNLVFLEETSLVSRPMLSYMEVKRRMVARLRHL 304
Cdd:TIGR01790 161 EARLSRPPHGPSSMVIMDARVDQL-AAPELK---GYRPTFLYAMPLGSTRVFIEETSLADRPALPRDRLRQRILARLNAQ 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2475333194 305 GIKVRSVLEEEKCVITMGGPLPRIPQNVMAIGGTSGIVHPSSGYMVARSMALAPVLAEAIVESLGSTrmirgSQLYHRVW 384
Cdd:TIGR01790 237 GWQIKTIEEEEWGALPVGLPGPFLPQRVAAFGAAAGMVHPTTGYSVARALSDAPGLAAAIAQALCQS-----SELATAAW 311

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2475333194 385 NGLWPSDRRRVRECYCFGMETLLKLDLEGTRRLFDAFFDVDPKYWHGFLSSRLSVKELAVLSLYLFGHASNLARLDI 461
Cdd:TIGR01790 312 DGLWPTERRRQRYFRLLGRMLFLALEPEERRRFFQRFFGLPEELWERFLAARLSLPDLLRVLLRMFGQPPNPVRSAL 388
PLN02697 PLN02697
lycopene epsilon cyclase
 66-462 1.28e-97

lycopene epsilon cyclase


Pssm-ID: 215375 [Multi-domain]  Cd Length: 529  Bit Score: 304.04  E-value: 1.28e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2475333194  66 DVIIIGTGPAGLRLAEQVSKYGIKVCCVDPS-PLSmwpNNYGVWVDEFEKLGLEDCLDHKWPVSCVHISDHKTKYLDRPY 144
Cdd:PLN02697  110 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDlPFT---NNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAY 186

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2475333194 145 GRVSRKKLKLKLLNSCVENRVKFYKAKVLKV-KHEEFESSIVCDDGRKISGSLIVDASGYAS-DFIEYD--KPRNhGYQV 220
Cdd:PLN02697  187 GRVSRTLLHEELLRRCVESGVSYLSSKVDRItEASDGLRLVACEDGRVIPCRLATVASGAASgRLLQYEvgGPRV-CVQT 265

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2475333194 221 AHGILAEVDNHPFDLDKMMLMDWRDSHLGNEPYLRVKNtkePTFLYAMPFDRNLVFLEETSLVSRPMLSYMEVKRRMVAR 300
Cdd:PLN02697  266 AYGVEVEVENNPYDPSLMVFMDYRDYFKEKVSHLEAEY---PTFLYAMPMSSTRVFFEETCLASKDAMPFDLLKKRLMSR 342

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2475333194 301 LRHLGIKVRSVLEEEKCVITMGGPLPRIPQNVMAIGGTSGIVHPSSGYMVARSMALAPVLAEAIVESL------GSTRMI 374
Cdd:PLN02697  343 LETMGIRILKTYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIARILknvssgGKLGTS 422

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2475333194 375 RGSQLYHRVWNGLWPSDRRRVRECYCFGMETLLKLDLEGTRRLFDAFFDVDPKYWHGFLSSRLSVKELAVLSLYLFGHAS 454
Cdd:PLN02697  423 NSSNISMQAWNTLWPQERKRQRAFFLFGLALILQLDTEGIRTFFVTFFRLPKWMWQGFLGSTLSSVDLILFALYMFVIAP 502


                  ....*...
gi 2475333194 455 NLARLDIV 462
Cdd:PLN02697  503 NQLRMQLV 510
FixC COG0644
Dehydrogenase (flavoprotein) [Energy production and conversion];
73-390 1.99e-10

Dehydrogenase (flavoprotein) [Energy production and conversion];


Pssm-ID: 440409 [Multi-domain]  Cd Length: 281  Bit Score: 61.52  E-value: 1.99e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2475333194  73 GPAGLRLAEQVSKYGIKVCCVDPSPLSMWPNNYGV----WVDEFEKLGLEDCLDHKWPVSCVHISDHKTKYLDRPYGR-- 146
Cdd:COG0644     2 GPAGSAAARRLARAGLSVLLLEKGSFPGDKICGGGllprALEELEPLGLDEPLERPVRGARFYSPGGKSVELPPGRGGgy 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2475333194 147 -VSRKKLKLKLLNSCVENRVKFY-KAKVLKVKHEEFESSIVCDDGRKISGSLIVDASGYAS-----DFIEYDKPRNHGYQ 219
Cdd:COG0644    82 vVDRARFDRWLAEQAEEAGAEVRtGTRVTDVLRDDGRVVVRTGDGEEIRADYVVDADGARSllarkLGLKRRSDEPQDYA 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2475333194 220 VA-HGILAEVDNHPFDLDKMMLMDWRDSHLGnepYLrvkntkeptFLYamPFDRNLVfleetslvsrpmlsymevkrrmv 298
Cdd:COG0644   162 LAiKEHWELPPLEGVDPGAVEFFFGEGAPGG---YG---------WVF--PLGDGRV----------------------- 204

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2475333194 299 arlrHLGikvrsvleeekcvITMGGPLPRIP-QNVMAIGGTSGIVHPSSGYMVARSMALAPVLAEAIVESLGSTRMIRGS 377
Cdd:COG0644   205 ----SVG-------------IPLGGPRPRLVgDGVLLVGDAAGFVDPLTGEGIHLAMKSGRLAAEAIAEALEGGDFSAEA 267

                         330
                  ....*....|....
gi 2475333194 378 -QLYHRVWNGLWPS 390
Cdd:COG0644   268 lAEYERRLRELLKA 281
Lpd COG1249
Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex ...
 64-98 2.74e-06

Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase [Energy production and conversion]; Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase is part of the Pathway/BioSystem: Glycine cleavagePyruvate oxidation


Pssm-ID: 440861 [Multi-domain]  Cd Length: 456  Bit Score: 49.70  E-value: 2.74e-06
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 2475333194  64 EFDVIIIGTGPAGLRLAEQVSKYGIKVCCVDPSPL 98
Cdd:COG1249     3 DYDLVVIGAGPGGYVAAIRAAQLGLKVALVEKGRL 37
PRK06292 PRK06292
dihydrolipoamide dehydrogenase; Validated
 64-99 6.04e-06

dihydrolipoamide dehydrogenase; Validated


Pssm-ID: 235774 [Multi-domain]  Cd Length: 460  Bit Score: 48.64  E-value: 6.04e-06
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 2475333194  64 EFDVIIIGTGPAGLRLAEQVSKYGIKVCCVDPSPLS 99
Cdd:PRK06292    3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEKGPLG 38
UbiH COG0654
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme ...
 64-255 1.20e-05

2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme transport and metabolism, Energy production and conversion]; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases is part of the Pathway/BioSystem: Ubiquinone biosynthesis


Pssm-ID: 440419 [Multi-domain]  Cd Length: 326  Bit Score: 47.24  E-value: 1.20e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2475333194  64 EFDVIIIGTGPAGLRLAEQVSKYGIKVCCVDPSP-LSMWPNNYGVW---VDEFEKLGLED-CLDHKWPVSCVHISDHKTk 138
Cdd:COG0654     3 RTDVLIVGGGPAGLALALALARAGIRVTVVERAPpPRPDGRGIALSprsLELLRRLGLWDrLLARGAPIRGIRVRDGSD- 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2475333194 139 ylDRPYGRVSRKKLKLKLLNScVENRV---------------KFYKAKVLKVKHEEFESSIVCDDGRKISGSLIVDASGY 203
Cdd:COG0654    82 --GRVLARFDAAETGLPAGLV-VPRADleralleaaralgveLRFGTEVTGLEQDADGVTVTLADGRTLRADLVVGADGA 158

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2475333194 204 AS--------DFIEYDKPRNHGY-QVAHGILAEVDNHPFDLDKMMLMDWRDSHLGNEPYLR 255
Cdd:COG0654   159 RSavrrllgiGFTGRDYPQRALWaGVRTELRARLAAAGPRLGELLELSPRSAFPLRRRRAE 219
PRK09126 PRK09126
FAD-dependent hydroxylase;
65-101 5.80e-05

FAD-dependent hydroxylase;


Pssm-ID: 236385 [Multi-domain]  Cd Length: 392  Bit Score: 45.32  E-value: 5.80e-05
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 2475333194  65 FDVIIIGTGPAGLRLAEQVSKYGIKVCCVDPSPLSMW 101
Cdd:PRK09126    4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAAL 40
PRK08294 PRK08294
phenol 2-monooxygenase; Provisional
 63-97 6.90e-05

phenol 2-monooxygenase; Provisional


Pssm-ID: 236223 [Multi-domain]  Cd Length: 634  Bit Score: 45.36  E-value: 6.90e-05
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 2475333194  63 AEFDVIIIGTGPAGLRLAEQVSKY-GIKVCCVDPSP 97
Cdd:PRK08294   31 DEVDVLIVGCGPAGLTLAAQLSAFpDITTRIVERKP 66
PTZ00367 PTZ00367
squalene epoxidase; Provisional
 64-145 1.49e-04

squalene epoxidase; Provisional


Pssm-ID: 240384 [Multi-domain]  Cd Length: 567  Bit Score: 44.07  E-value: 1.49e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2475333194  64 EFDVIIIGTGPAGLRLAEQVSKYGIKVCCVDPSPLS---------MWPNNygvwVDEFEKLGLEDCLDH-KWPVSCVHIS 133
Cdd:PTZ00367   33 DYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSkpdrivgelLQPGG----VNALKELGMEECAEGiGMPCFGYVVF 108

                          90
                  ....*....|..
gi 2475333194 134 DHKTKYLDRPYG 145
Cdd:PTZ00367  109 DHKGKQVKLPYG 120
FAD_binding_3 pfam01494
FAD binding domain; This domain is involved in FAD binding in a number of enzymes.
 64-94 2.20e-04

FAD binding domain; This domain is involved in FAD binding in a number of enzymes.


Pssm-ID: 396193 [Multi-domain]  Cd Length: 348  Bit Score: 43.47  E-value: 2.20e-04
                          10        20        30
                  ....*....|....*....|....*....|.
gi 2475333194  64 EFDVIIIGTGPAGLRLAEQVSKYGIKVCCVD 94
Cdd:pfam01494   1 ETDVLIVGGGPAGLMLALLLARAGVRVVLVE 31
HI0933_like pfam03486
HI0933-like protein;
65-90 1.01e-03

HI0933-like protein;


Pssm-ID: 427330 [Multi-domain]  Cd Length: 406  Bit Score: 41.41  E-value: 1.01e-03
                          10        20
                  ....*....|....*....|....*.
gi 2475333194  65 FDVIIIGTGPAGLRLAEQVSKYGIKV 90
Cdd:pfam03486   1 FDVIVIGGGAAGLMAAISAAKRGRRV 26
Pyr_redox_2 pfam07992
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ...
 65-94 1.84e-03

Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.


Pssm-ID: 400379 [Multi-domain]  Cd Length: 301  Bit Score: 40.38  E-value: 1.84e-03
                          10        20        30
                  ....*....|....*....|....*....|
gi 2475333194  65 FDVIIIGTGPAGLRLAEQVSKYGIKVCCVD 94
Cdd:pfam07992   1 YDVVVIGGGPAGLAAALTLAQLGGKVTLIE 30
PRK07494 PRK07494
UbiH/UbiF family hydroxylase;
65-97 2.70e-03

UbiH/UbiF family hydroxylase;


Pssm-ID: 181001 [Multi-domain]  Cd Length: 388  Bit Score: 39.89  E-value: 2.70e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 2475333194  65 FDVIIIGTGPAGLRLAEQVSKYGIKVCCVDPSP 97
Cdd:PRK07494    8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEP 40
PRK05249 PRK05249
Si-specific NAD(P)(+) transhydrogenase;
64-94 4.81e-03

Si-specific NAD(P)(+) transhydrogenase;


Pssm-ID: 235373 [Multi-domain]  Cd Length: 461  Bit Score: 39.37  E-value: 4.81e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 2475333194  64 EFDVIIIGTGPAGLRLAEQVSKYGIKVCCVD 94
Cdd:PRK05249    5 DYDLVVIGSGPAGEGAAMQAAKLGKRVAVIE 35
PRK06847 PRK06847
hypothetical protein; Provisional
 66-135 6.70e-03

hypothetical protein; Provisional


Pssm-ID: 235874 [Multi-domain]  Cd Length: 375  Bit Score: 38.70  E-value: 6.70e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2475333194  66 DVIIIGTGPAGLRLAEQVSKYGIKVCCVDPSPLsmWpNNYGVW-------VDEFEKLG-LEDCLDHKWPVSCVHISDH 135
Cdd:PRK06847    6 KVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE--W-RVYGAGitlqgnaLRALRELGvLDECLEAGFGFDGVDLFDP 80
TGR TIGR01438
thioredoxin and glutathione reductase selenoprotein; This homodimeric, FAD-containing member ...
 64-98 7.83e-03

thioredoxin and glutathione reductase selenoprotein; This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.


Pssm-ID: 273624 [Multi-domain]  Cd Length: 484  Bit Score: 38.68  E-value: 7.83e-03
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 2475333194  64 EFDVIIIGTGPAGLRLAEQVSKYGIKVCCVD---PSPL 98
Cdd:TIGR01438   2 DYDLIVIGGGSGGLAAAKEAAAYGAKVMLLDfvtPTPL 39
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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