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Conserved domains on  [gi|2490899816|dbj|BEG63759|]
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capsid protein VP1, partial [Norovirus GII.17]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Calici_coat super family cl03015
Calicivirus coat protein;
6-90 3.97e-17

Calicivirus coat protein;


The actual alignment was detected with superfamily member pfam00915:

Pssm-ID: 459994  Cd Length: 291  Bit Score: 73.39  E-value: 3.97e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2490899816   6 GAAGLVPE-GNNETLPLEPVAGAAIAAPVTGQNNIID-PWIRTNFVQAPNGEFTVSPrnsPGEILLNLELGPDLNPYLAH 83
Cdd:pfam00915  22 GTGILVPEvGASVPLAMAPVSGSSATAATAGQGKSVDqEWITNFSYHTSQNWSTIEP---QGKVLFDQSLGPHLNPFLLH 98

                  ....*..
gi 2490899816  84 LSRMYNG 90
Cdd:pfam00915  99 LSQMYNG 105
 
Name Accession Description Interval E-value
Calici_coat pfam00915
Calicivirus coat protein;
6-90 3.97e-17

Calicivirus coat protein;


Pssm-ID: 459994  Cd Length: 291  Bit Score: 73.39  E-value: 3.97e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2490899816   6 GAAGLVPE-GNNETLPLEPVAGAAIAAPVTGQNNIID-PWIRTNFVQAPNGEFTVSPrnsPGEILLNLELGPDLNPYLAH 83
Cdd:pfam00915  22 GTGILVPEvGASVPLAMAPVSGSSATAATAGQGKSVDqEWITNFSYHTSQNWSTIEP---QGKVLFDQSLGPHLNPFLLH 98

                  ....*..
gi 2490899816  84 LSRMYNG 90
Cdd:pfam00915  99 LSQMYNG 105
 
Name Accession Description Interval E-value
Calici_coat pfam00915
Calicivirus coat protein;
6-90 3.97e-17

Calicivirus coat protein;


Pssm-ID: 459994  Cd Length: 291  Bit Score: 73.39  E-value: 3.97e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2490899816   6 GAAGLVPE-GNNETLPLEPVAGAAIAAPVTGQNNIID-PWIRTNFVQAPNGEFTVSPrnsPGEILLNLELGPDLNPYLAH 83
Cdd:pfam00915  22 GTGILVPEvGASVPLAMAPVSGSSATAATAGQGKSVDqEWITNFSYHTSQNWSTIEP---QGKVLFDQSLGPHLNPFLLH 98

                  ....*..
gi 2490899816  84 LSRMYNG 90
Cdd:pfam00915  99 LSQMYNG 105
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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