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Conserved domains on  [gi|1916427469|emb|CAA2956279.1|]
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PLATZ domain-containing [Olea europaea subsp. europaea]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLATZ pfam04640
PLATZ transcription factor; Plant AT-rich sequence and zinc-binding proteins (PLATZ) are zinc ...
 58-131 1.96e-21

PLATZ transcription factor; Plant AT-rich sequence and zinc-binding proteins (PLATZ) are zinc dependant DNA binding proteins. They bind to AT rich sequences and functions in transcriptional repression. Included in this family is the protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1 (RITF1), a transcription factor that plays a central role in mediating RGF1 hormone peptide signalling, leading to the production of reactive oxygen species (ROS) in roots to modulate meristem size and root growth, probably via oxidative post-translational modification of the transcription factor PLETHORA.


:

Pssm-ID: 461376  Cd Length: 79  Bit Score: 83.47  E-value: 1.96e-21
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1916427469  58 RRYMYCEVIRRQDLCKLFDCSNIQAYNTNKSKVLFLK----QRSQQSSPQQNSKDHSCIICKRSLPD-SCLYCSIACKV 131
Cdd:pfam04640   1 RRYSYHDVVRVADIQKLLDCSGIQTYVINSAKVVFLNprpqSRQGKPGAPSKGSSNACETCGRSLQDpPFRFCSLSCKV 79
Bbox2_GefO-like cd20207
B-box-type 2 zinc finger found in Ras guanine nucleotide exchange factor O (GefO) and similar ...
 17-58 9.51e-11

B-box-type 2 zinc finger found in Ras guanine nucleotide exchange factor O (GefO) and similar proteins; Ras guanine-nucleotide exchange factors (RasGEFs) activate Ras by catalyzing the replacement of GDP with GTP, and thus lie near the top of many signaling pathways. They are important for signaling in development and chemotaxis in many organisms. Ras guanine nucleotide exchange factor O (GefO), also known as RasGEF domain-containing protein O, is faintly expressed during development of Dictyostelium discoideum. It contains a C3HC4-type RING finger, a B-box motif that shows high sequence similarity with B-Box-type zinc finger 2 found in tripartite motif-containing proteins (TRIMs), a REM (Ras exchanger motif) domain, and a # RasGEF domain. The type 2 B-box (Bbox2) zinc finger is characterized by a CHC3H2 zinc-binding consensus motif.


:

Pssm-ID: 380908  Cd Length: 40  Bit Score: 54.46  E-value: 9.51e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1916427469  17 GVCFTHSEHKkkeLDHFCIDCKKPICCNCVL-THALHNYVKIR 58
Cdd:cd20207     1 VVCSKHNEHM---LDKFCKDCSAPVCENCVLtTHAGHNVEPIT 40
 
Name Accession Description Interval E-value
PLATZ pfam04640
PLATZ transcription factor; Plant AT-rich sequence and zinc-binding proteins (PLATZ) are zinc ...
 58-131 1.96e-21

PLATZ transcription factor; Plant AT-rich sequence and zinc-binding proteins (PLATZ) are zinc dependant DNA binding proteins. They bind to AT rich sequences and functions in transcriptional repression. Included in this family is the protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1 (RITF1), a transcription factor that plays a central role in mediating RGF1 hormone peptide signalling, leading to the production of reactive oxygen species (ROS) in roots to modulate meristem size and root growth, probably via oxidative post-translational modification of the transcription factor PLETHORA.


Pssm-ID: 461376  Cd Length: 79  Bit Score: 83.47  E-value: 1.96e-21
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1916427469  58 RRYMYCEVIRRQDLCKLFDCSNIQAYNTNKSKVLFLK----QRSQQSSPQQNSKDHSCIICKRSLPD-SCLYCSIACKV 131
Cdd:pfam04640   1 RRYSYHDVVRVADIQKLLDCSGIQTYVINSAKVVFLNprpqSRQGKPGAPSKGSSNACETCGRSLQDpPFRFCSLSCKV 79
Bbox2_GefO-like cd20207
B-box-type 2 zinc finger found in Ras guanine nucleotide exchange factor O (GefO) and similar ...
 17-58 9.51e-11

B-box-type 2 zinc finger found in Ras guanine nucleotide exchange factor O (GefO) and similar proteins; Ras guanine-nucleotide exchange factors (RasGEFs) activate Ras by catalyzing the replacement of GDP with GTP, and thus lie near the top of many signaling pathways. They are important for signaling in development and chemotaxis in many organisms. Ras guanine nucleotide exchange factor O (GefO), also known as RasGEF domain-containing protein O, is faintly expressed during development of Dictyostelium discoideum. It contains a C3HC4-type RING finger, a B-box motif that shows high sequence similarity with B-Box-type zinc finger 2 found in tripartite motif-containing proteins (TRIMs), a REM (Ras exchanger motif) domain, and a # RasGEF domain. The type 2 B-box (Bbox2) zinc finger is characterized by a CHC3H2 zinc-binding consensus motif.


Pssm-ID: 380908  Cd Length: 40  Bit Score: 54.46  E-value: 9.51e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1916427469  17 GVCFTHSEHKkkeLDHFCIDCKKPICCNCVL-THALHNYVKIR 58
Cdd:cd20207     1 VVCSKHNEHM---LDKFCKDCSAPVCENCVLtTHAGHNVEPIT 40
 
Name Accession Description Interval E-value
PLATZ pfam04640
PLATZ transcription factor; Plant AT-rich sequence and zinc-binding proteins (PLATZ) are zinc ...
 58-131 1.96e-21

PLATZ transcription factor; Plant AT-rich sequence and zinc-binding proteins (PLATZ) are zinc dependant DNA binding proteins. They bind to AT rich sequences and functions in transcriptional repression. Included in this family is the protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1 (RITF1), a transcription factor that plays a central role in mediating RGF1 hormone peptide signalling, leading to the production of reactive oxygen species (ROS) in roots to modulate meristem size and root growth, probably via oxidative post-translational modification of the transcription factor PLETHORA.


Pssm-ID: 461376  Cd Length: 79  Bit Score: 83.47  E-value: 1.96e-21
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1916427469  58 RRYMYCEVIRRQDLCKLFDCSNIQAYNTNKSKVLFLK----QRSQQSSPQQNSKDHSCIICKRSLPD-SCLYCSIACKV 131
Cdd:pfam04640   1 RRYSYHDVVRVADIQKLLDCSGIQTYVINSAKVVFLNprpqSRQGKPGAPSKGSSNACETCGRSLQDpPFRFCSLSCKV 79
Bbox2_GefO-like cd20207
B-box-type 2 zinc finger found in Ras guanine nucleotide exchange factor O (GefO) and similar ...
 17-58 9.51e-11

B-box-type 2 zinc finger found in Ras guanine nucleotide exchange factor O (GefO) and similar proteins; Ras guanine-nucleotide exchange factors (RasGEFs) activate Ras by catalyzing the replacement of GDP with GTP, and thus lie near the top of many signaling pathways. They are important for signaling in development and chemotaxis in many organisms. Ras guanine nucleotide exchange factor O (GefO), also known as RasGEF domain-containing protein O, is faintly expressed during development of Dictyostelium discoideum. It contains a C3HC4-type RING finger, a B-box motif that shows high sequence similarity with B-Box-type zinc finger 2 found in tripartite motif-containing proteins (TRIMs), a REM (Ras exchanger motif) domain, and a # RasGEF domain. The type 2 B-box (Bbox2) zinc finger is characterized by a CHC3H2 zinc-binding consensus motif.


Pssm-ID: 380908  Cd Length: 40  Bit Score: 54.46  E-value: 9.51e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1916427469  17 GVCFTHSEHKkkeLDHFCIDCKKPICCNCVL-THALHNYVKIR 58
Cdd:cd20207     1 VVCSKHNEHM---LDKFCKDCSAPVCENCVLtTHAGHNVEPIT 40
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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