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Conserved domains on  [gi|669081|emb|CAA33997|]
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unnamed protein product (chloroplast) [Oryza sativa Japonica Group]

Protein Classification

photosystem I assembly protein Ycf3( domain architecture ID 11414006)

photosystem I assembly protein Ycf3 is essential for the assembly of the photosystem I (PSI) complex; may act as a chaperone-like factor to guide the assembly of the PSI subunits

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ycf3 CHL00033
photosystem I assembly protein Ycf3
 1-167 1.71e-126

photosystem I assembly protein Ycf3


:

Pssm-ID: 176974 [Multi-domain]  Cd Length: 168  Bit Score: 352.00  E-value: 1.71e-126
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 669081      1 MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKRAFTYYRDGMLAQSEGNYAEALQNYYEATRLESDPYDRSYILYNIGL 80
Cdd:CHL00033   1 MPRSQRNDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 669081     81 IHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY-GEQAILQGDSEIAEAWFDQAAEYWKQAIGLTPGNYIEAQNW 159
Cdd:CHL00033  81 IHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYrGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNW 160


                 ....*...
gi 669081    160 LKITKRFE 167
Cdd:CHL00033 161 LKITGRFE 168
 
Name Accession Description Interval E-value
ycf3 CHL00033
photosystem I assembly protein Ycf3
 1-167 1.71e-126

photosystem I assembly protein Ycf3


Pssm-ID: 176974 [Multi-domain]  Cd Length: 168  Bit Score: 352.00  E-value: 1.71e-126
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 669081      1 MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKRAFTYYRDGMLAQSEGNYAEALQNYYEATRLESDPYDRSYILYNIGL 80
Cdd:CHL00033   1 MPRSQRNDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 669081     81 IHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY-GEQAILQGDSEIAEAWFDQAAEYWKQAIGLTPGNYIEAQNW 159
Cdd:CHL00033  81 IHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYrGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNW 160


                 ....*...
gi 669081    160 LKITKRFE 167
Cdd:CHL00033 161 LKITGRFE 168
Ycf3 COG5713
Photosystem I assembly protein Ycf3, contains TPR repeats [Energy production and conversion]; ...
 1-167 1.60e-95

Photosystem I assembly protein Ycf3, contains TPR repeats [Energy production and conversion]; Photosystem I assembly protein Ycf3, contains TPR repeats is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444423  Cd Length: 173  Bit Score: 273.90  E-value: 1.60e-95
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 669081     1 MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKRAFTYYRDGMLAQSEGNYAEALQNYYEATRLESDPYDRSYILYNIGL 80
Cdd:COG5713   1 MPRTQRNDNFIDKSFTVMADLILKMLPTNKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPYDRSYILYNMGL 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 669081    81 IHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY-GEQAILQGDSEIAEAWFDQAAEYWKQAIGLTPGNYIEAQNW 159
Cdd:COG5713  81 IHASNGEHEKALEYYHQALELNPRMPQALNNIAVIYHYqGEKAKEAGDQDEAEALFDKAAEYWKRAIRLAPNNYIEAQNW 160


                ....*...
gi 669081   160 LKITKRFE 167
Cdd:COG5713 161 LKTTGRSK 168
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 42-106 1.04e-05

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 41.55  E-value: 1.04e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 669081      42 GMLAQSEGNYAEALQNYYEATRLESDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLP 106
Cdd:pfam13432   4 ARAALRAGDYDDAAAALEAALARFPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 31-152 1.16e-04

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 41.51  E-value: 1.16e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 669081      31 GEKRAFTYYRDGMLAQSEGNYAEALQNYYEAtrLESDP-YDRSYIlyNIGLIHTSNGEHTKALEYYFRALERNPflpqaf 109
Cdd:TIGR00990 327 GEKEAIALNLRGTFKCLKGKHLEALADLSKS--IELDPrVTQSYI--KRASMNLELGDPDKAEEDFDKALKLNS------ 396

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 669081     110 NNMAVICHYGEQAILQGDseiaeawFDQAAEYWKQAIGLTPGN 152
Cdd:TIGR00990 397 EDPDIYYHRAQLHFIKGE-------FAQAGKDYQKSIDLDPDF 432
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 74-103 1.38e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.43  E-value: 1.38e-04
                           10        20        30
                   ....*....|....*....|....*....|
gi 669081       74 ILYNIGLIHTSNGEHTKALEYYFRALERNP 103
Cdd:smart00028   3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32
 
Name Accession Description Interval E-value
ycf3 CHL00033
photosystem I assembly protein Ycf3
 1-167 1.71e-126

photosystem I assembly protein Ycf3


Pssm-ID: 176974 [Multi-domain]  Cd Length: 168  Bit Score: 352.00  E-value: 1.71e-126
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 669081      1 MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKRAFTYYRDGMLAQSEGNYAEALQNYYEATRLESDPYDRSYILYNIGL 80
Cdd:CHL00033   1 MPRSQRNDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 669081     81 IHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY-GEQAILQGDSEIAEAWFDQAAEYWKQAIGLTPGNYIEAQNW 159
Cdd:CHL00033  81 IHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYrGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNW 160


                 ....*...
gi 669081    160 LKITKRFE 167
Cdd:CHL00033 161 LKITGRFE 168
Ycf3 COG5713
Photosystem I assembly protein Ycf3, contains TPR repeats [Energy production and conversion]; ...
 1-167 1.60e-95

Photosystem I assembly protein Ycf3, contains TPR repeats [Energy production and conversion]; Photosystem I assembly protein Ycf3, contains TPR repeats is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444423  Cd Length: 173  Bit Score: 273.90  E-value: 1.60e-95
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 669081     1 MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKRAFTYYRDGMLAQSEGNYAEALQNYYEATRLESDPYDRSYILYNIGL 80
Cdd:COG5713   1 MPRTQRNDNFIDKSFTVMADLILKMLPTNKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPYDRSYILYNMGL 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 669081    81 IHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY-GEQAILQGDSEIAEAWFDQAAEYWKQAIGLTPGNYIEAQNW 159
Cdd:COG5713  81 IHASNGEHEKALEYYHQALELNPRMPQALNNIAVIYHYqGEKAKEAGDQDEAEALFDKAAEYWKRAIRLAPNNYIEAQNW 160


                ....*...
gi 669081   160 LKITKRFE 167
Cdd:COG5713 161 LKTTGRSK 168
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 1-169 2.40e-94

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 270.77  E-value: 2.40e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 669081      1 MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKRAFTYYRDGMLAQSEGNYAEALQNYYEATRLESDPYDRSYILYNIGL 80
Cdd:PRK02603   1 MPRTQRNDNFIDKSFTVMADLILKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 669081     81 IHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY-GEQAILQGDSEIAEAWFDQAAEYWKQAIGLTPGNYIEAQNW 159
Cdd:PRK02603  81 IYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKrGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNW 160

                        170
                 ....*....|
gi 669081    160 LKITKRFEFE 169
Cdd:PRK02603 161 LKTTGRSNID 170
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
21-141 3.34e-12

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 62.24  E-value: 3.34e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 669081    21 ILLRIIPTTSGEKRAFTYYRDGMLAQSEGNYAEALQNYYEATRLesDPyDRSYILYNIGLIHTSNGEHTKALEYYFRALE 100
Cdd:COG4785  59 AAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALEL--DP-DLAEAYNNRGLAYLLLGDYDAALEDFDRALE 135

                        90       100       110       120
                ....*....|....*....|....*....|....*....|.
gi 669081   101 RNPFLPQAFNNMAVICHYGeqailqGDSEIAEAWFDQAAEY 141
Cdd:COG4785 136 LDPDYAYAYLNRGIALYYL------GRYELAIADLEKALEL 170
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 35-160 2.45e-11

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 60.78  E-value: 2.45e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 669081    35 AFTYYRDGMLAQSEGNYAEALQNYYEATRLESDPYDrsyILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAV 114
Cdd:COG3914 112 AEALFNLGNLLLALGRLEEALAALRRALALNPDFAE---AYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGN 188

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*.
gi 669081   115 IChygeqaILQGDseiaeawFDQAAEYWKQAIGLTPGNYIEAQNWL 160
Cdd:COG3914 189 AL------QDLGR-------LEEAIAAYRRALELDPDNADAHSNLL 221
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 44-160 1.60e-10

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 58.47  E-value: 1.60e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 669081    44 LAQSEGNYAEALQNYYEAtrLESDPyDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNmavichYGEQAI 123
Cdd:COG3914  87 LLQALGRYEEALALYRRA--LALNP-DNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLN------LGEALR 157

                        90       100       110
                ....*....|....*....|....*....|....*..
gi 669081   124 LQGDseiaeawFDQAAEYWKQAIGLTPgNYIEAQNWL 160
Cdd:COG3914 158 RLGR-------LEEAIAALRRALELDP-DNAEALNNL 186
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
35-152 2.47e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 57.32  E-value: 2.47e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 669081    35 AFTYYRDGMLAQSEGNYAEALQNYYEATRLESDPYDrsyILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAV 114
Cdd:COG0457   8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAE---ALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGL 84

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 669081   115 ICHY---GEQAI------LQGDSEIAEAW------------FDQAAEYWKQAIGLTPGN 152
Cdd:COG0457  85 ALQAlgrYEEALedydkaLELDPDDAEALynlglallelgrYDEAIEAYERALELDPDD 143
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 32-140 1.23e-09

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 54.20  E-value: 1.23e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 669081    32 EKRAFTYYRDGMLAQSEGNYAEALQNYYEAtrLESDPYDrSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNN 111
Cdd:COG5010  51 AKAFAIESPSDNLYNKLGDFEESLALLEQA--LQLDPNN-PELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSN 127

                        90       100
                ....*....|....*....|....*....
gi 669081   112 MAVIchygeqAILQGDSEIAEAWFDQAAE 140
Cdd:COG5010 128 LAAL------LLSLGQDDEAKAALQRALG 150
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 32-152 1.17e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 52.81  E-value: 1.17e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 669081    32 EKRAFTYYRDGMLAQSEGNYAEALQNYYEAtrLESDPYDRSyILYNIGLIHTSNGEHTKALEYYFRALERNPflpqafNN 111
Cdd:COG2956  73 PDRAEALLELAQDYLKAGLLDRAEELLEKL--LELDPDDAE-ALRLLAEIYEQEGDWEKAIEVLERLLKLGP------EN 143

                        90       100       110       120
                ....*....|....*....|....*....|....*....|.
gi 669081   112 MAVICHYGEQAILQGDseiaeawFDQAAEYWKQAIGLTPGN 152
Cdd:COG2956 144 AHAYCELAELYLEQGD-------YDEAIEALEKALKLDPDC 177
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 43-152 1.32e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 50.77  E-value: 1.32e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 669081    43 MLAQSE---GNYAEALQNYYEATRLesDPyDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVIchyg 119
Cdd:COG4235  22 LLGRAYlrlGRYDEALAAYEKALRL--DP-DNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLA---- 94

                        90       100       110
                ....*....|....*....|....*....|...
gi 669081   120 eqAILQGDseiaeawFDQAAEYWKQAIGLTPGN 152
Cdd:COG4235  95 --AFQQGD-------YAEAIAAWQKLLALLPAD 118
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
35-160 2.07e-08

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 51.93  E-value: 2.07e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 669081    35 AFTYYRDGMLAQSEGNYAEALQNYYEAtrLESDPYDrSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAV 114
Cdd:COG0457  76 AEALNNLGLALQALGRYEEALEDYDKA--LELDPDD-AEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGI 152

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*.
gi 669081   115 ICHygeqaiLQGDSEIAEAWFDQAAEYWKQAIGLTPGNYIEAQNWL 160
Cdd:COG0457 153 ALE------KLGRYEEALELLEKLEAAALAALLAAALGEAALALAA 192
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
44-140 6.49e-08

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 47.86  E-value: 6.49e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 669081    44 LAQSEGNYAEALQNYYEAtrLESDPyDRSYILYNIGLIHTSNGEHTKALEyYFRALERNPFLPQAFNNMAVIchygeqAI 123
Cdd:COG3063   1 LYLKLGDLEEAEEYYEKA--LELDP-DNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAEL------LL 70

                        90
                ....*....|....*..
gi 669081   124 LQGDSEIAEAWFDQAAE 140
Cdd:COG3063  71 ELGDYDEALAYLERALE 87
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
33-160 1.33e-07

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 49.53  E-value: 1.33e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 669081    33 KRAFTYYRDGMLAQSEGNYAEALQNYYEATRLESDPY----DRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQA 108
Cdd:COG4785  30 LFAAVLALAIALADLALALAAAALAAAALAAERIDRAlalpDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEA 109

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 669081   109 FNNMAVIchygeqAILQGDSEIAEAWFDQAAE--------YWKQAIGLTP-GNYIEAQNWL 160
Cdd:COG4785 110 YNNRGLA------YLLLGDYDAALEDFDRALEldpdyayaYLNRGIALYYlGRYELAIADL 164
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 34-152 2.15e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 47.49  E-value: 2.15e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 669081    34 RAFTYYRDGMLAQSEGNYAEALQNYYEAtrLESDPYDrSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMA 113
Cdd:COG4783   3 CAEALYALAQALLLAGDYDEAEALLEKA--LELDPDN-PEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLG 79

                        90       100       110
                ....*....|....*....|....*....|....*....
gi 669081   114 VIchygeqAILQGDseiaeawFDQAAEYWKQAIGLTPGN 152
Cdd:COG4783  80 LA------LLKAGD-------YDEALALLEKALKLDPEH 105
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 31-140 8.47e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 47.42  E-value: 8.47e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 669081    31 GEKRAFTYYRDGMLAQSEGNYAEALQNYYEAtrLESDPyDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPflpqafN 110
Cdd:COG2956 140 GPENAHAYCELAELYLEQGDYDEAIEALEKA--LKLDP-DCARALLLLAELYLEQGDYEEAIAALERALEQDP------D 210

                        90       100       110
                ....*....|....*....|....*....|
gi 669081   111 NMAVICHYGEQAILQGDSEIAEAWFDQAAE 140
Cdd:COG2956 211 YLPALPRLAELYEKLGDPEEALELLRKALE 240
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 42-152 1.53e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 45.18  E-value: 1.53e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 669081    42 GMLAQSEGNYAEALQNYYEATRLesDPyDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHygeq 121
Cdd:COG4783  45 GEILLQLGDLDEAIVLLHEALEL--DP-DEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYR---- 117

                        90       100       110
                ....*....|....*....|....*....|.
gi 669081   122 aiLQGDseiaeawFDQAAEYWKQAIGLTPGN 152
Cdd:COG4783 118 --ALGR-------PDEAIAALEKALELDPDD 139
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
64-160 2.82e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 45.77  E-value: 2.82e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 669081    64 LESDPyDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYG---EQAI------LQGDSEIAEAW 134
Cdd:COG0457   1 LELDP-DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLgryEEALadyeqaLELDPDDAEAL 79

                        90       100       110
                ....*....|....*....|....*....|....*...
gi 669081   135 ------------FDQAAEYWKQAIGLTPgNYIEAQNWL 160
Cdd:COG0457  80 nnlglalqalgrYEEALEDYDKALELDP-DDAEALYNL 116
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 35-161 6.81e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 44.72  E-value: 6.81e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 669081    35 AFTYYRDGMLAQSEGNYAEALQNYYEAtrLESDPyDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAV 114
Cdd:COG2956   8 ALGWYFKGLNYLLNGQPDKAIDLLEEA--LELDP-ETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQ 84

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 669081   115 IchygeqAILQGDseiaeawFDQAAEYWKQAIGLTPGN----------YIEAQNWLK 161
Cdd:COG2956  85 D------YLKAGL-------LDRAEELLEKLLELDPDDaealrllaeiYEQEGDWEK 128
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 42-106 1.04e-05

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 41.55  E-value: 1.04e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 669081      42 GMLAQSEGNYAEALQNYYEATRLESDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLP 106
Cdd:pfam13432   4 ARAALRAGDYDDAAAALEAALARFPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
TPR_1 pfam00515
Tetratricopeptide repeat;
72-103 1.60e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 40.10  E-value: 1.60e-05
                          10        20        30
                  ....*....|....*....|....*....|..
gi 669081      72 SYILYNIGLIHTSNGEHTKALEYYFRALERNP 103
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNP 32
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 38-156 1.68e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 43.56  E-value: 1.68e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 669081    38 YYRDGMLAQSEGNYAEALQNYyeaTRLESDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVIch 117
Cdd:COG2956 113 LRLLAEIYEQEGDWEKAIEVL---ERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAEL-- 187

                        90       100       110
                ....*....|....*....|....*....|....*....
gi 669081   118 ygeqAILQGDseiaeawFDQAAEYWKQAIGLTPgNYIEA 156
Cdd:COG2956 188 ----YLEQGD-------YEEAIAALERALEQDP-DYLPA 214
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 62-140 5.68e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 40.76  E-value: 5.68e-05
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 669081    62 TRLESDPYDRSYiLYNIGLIHTSNGEHTKALEYYFRALERNPflpqafNNMAVICHYGEQAILQGDSEIAEAWFDQAAE 140
Cdd:COG4235   8 QALAANPNDAEG-WLLLGRAYLRLGRYDEALAAYEKALRLDP------DNADALLDLAEALLAAGDTEEAEELLERALA 79
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 38-108 7.38e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 39.97  E-value: 7.38e-05
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 669081    38 YYRDGMLAQSEGNYAEALQNYYEATRLESDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQA 108
Cdd:COG1729  33 LYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDALLKLGLSYLELGDYDKARATLEELIKKYPDSEAA 103
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
81-161 1.03e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 39.38  E-value: 1.03e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 669081    81 IHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYG---EQAI-----LQGDSEIAEAWFDQAAEYWKQaigltpGN 152
Cdd:COG3063   1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQgryDEAIalekaLKLDPNNAEALLNLAELLLEL------GD 74


                ....*....
gi 669081   153 YIEAQNWLK 161
Cdd:COG3063  75 YDEALAYLE 83
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 31-152 1.16e-04

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 41.51  E-value: 1.16e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 669081      31 GEKRAFTYYRDGMLAQSEGNYAEALQNYYEAtrLESDP-YDRSYIlyNIGLIHTSNGEHTKALEYYFRALERNPflpqaf 109
Cdd:TIGR00990 327 GEKEAIALNLRGTFKCLKGKHLEALADLSKS--IELDPrVTQSYI--KRASMNLELGDPDKAEEDFDKALKLNS------ 396

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 669081     110 NNMAVICHYGEQAILQGDseiaeawFDQAAEYWKQAIGLTPGN 152
Cdd:TIGR00990 397 EDPDIYYHRAQLHFIKGE-------FAQAGKDYQKSIDLDPDF 432
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 74-103 1.38e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.43  E-value: 1.38e-04
                           10        20        30
                   ....*....|....*....|....*....|
gi 669081       74 ILYNIGLIHTSNGEHTKALEYYFRALERNP 103
Cdd:smart00028   3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 36-152 1.75e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 40.84  E-value: 1.75e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 669081      36 FTYYRDGMLAQSEGNYAEALQNYYEAtrLESDPydrSYI--LYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMA 113
Cdd:TIGR02917 262 LAHYLKALVDFQKKNYEDARETLQDA--LKSAP---EYLpaLLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLA 336

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 669081     114 VI---CHYGEQAI------------------LQGDSEIAEAWFDQAAEYWKQAIGLTPGN 152
Cdd:TIGR02917 337 SIqlrLGRVDEAIatlspalgldpddpaalsLLGEAYLALGDFEKAAEYLAKATELDPEN 396
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 51-158 2.63e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 39.56  E-value: 2.63e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 669081    51 YAEALQNYYEATRLESDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVIchygeqAILQGDsei 130
Cdd:COG5010  33 GANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALL------YSRSGD--- 103

                        90       100
                ....*....|....*....|....*...
gi 669081   131 aeawFDQAAEYWKQAIGLTPGNYIEAQN 158
Cdd:COG5010 104 ----KDEAKEYYEKALALSPDNPNAYSN 127
TPR_12 pfam13424
Tetratricopeptide repeat;
34-101 4.87e-04

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 36.98  E-value: 4.87e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 669081      34 RAFTYYRDGMLAQSEGNYAEALQNYYEATRL-----ESDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALER 101
Cdd:pfam13424   2 VATALNNLAAVLRRLGRYDEALELLEKALEIarrllGPDHPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
35-107 7.89e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 37.07  E-value: 7.89e-04
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 669081    35 AFTYYRDGMLAQSEGNYAEALQnYYEAtrLESDPyDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQ 107
Cdd:COG3063  26 ADALNNLGLLLLEQGRYDEAIA-LEKA--LKLDP-NNAEALLNLAELLLELGDYDEALAYLERALELDPSALR 94
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 42-140 8.53e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 38.56  E-value: 8.53e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 669081    42 GMLAQSEGNYAEALQNYYEAtrLESDPyDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNnmavichYGEQ 121
Cdd:COG2956 185 AELYLEQGDYEEAIAALERA--LEQDP-DYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLA-------LADL 254

                        90
                ....*....|....*....
gi 669081   122 AILQGDSEIAEAWFDQAAE 140
Cdd:COG2956 255 LERKEGLEAALALLERQLR 273
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 48-140 1.42e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 36.51  E-value: 1.42e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 669081    48 EGNYAEALQNYYEATRLESDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNP---FLPQAFNNMAVIchygeqAIL 124
Cdd:COG1729   6 AGDYDEAIAAFKAFLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPdspKAPDALLKLGLS------YLE 79

                        90
                ....*....|....*.
gi 669081   125 QGDSEIAEAWFDQAAE 140
Cdd:COG1729  80 LGDYDKARATLEELIK 95
TPR_12 pfam13424
Tetratricopeptide repeat;
70-144 2.34e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 35.06  E-value: 2.34e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 669081      70 DRSYILYNIGLIHTSNGEHTKALEYYFRALER--------NPFLPQAFNNMAVICHygeqaiLQGDSEIAEAWFDQAAEY 141
Cdd:pfam13424   1 DVATALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYL------ELGRYEEALELLERALAL 74


                  ...
gi 669081     142 WKQ 144
Cdd:pfam13424  75 AEK 77
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 42-161 5.26e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 36.60  E-value: 5.26e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 669081      42 GMLAQSEGNYAEALQNYYEATRLESDPYdrsYILYNIGLIHTSNGEHTKALEYYFRALERNPflpqafNNMAVICHYGEQ 121
Cdd:TIGR02917 472 GAIYLGKGDLAKAREAFEKALSIEPDFF---PAAANLARIDIQEGNPDDAIQRFEKVLTIDP------KNLRAILALAGL 542

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 669081     122 AILQGDSEIAEAWFDQAAEYWKQAIG--LTPGNYIEAQNWLK 161
Cdd:TIGR02917 543 YLRTGNEEEAVAWLEKAAELNPQEIEpaLALAQYYLGKGQLK 584
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 42-158 8.22e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 35.83  E-value: 8.22e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 669081      42 GMLAQSEGNYAEALQNYYEATRLESDpydrSYILYNIGLIHTSNGEHTKALEYYFRALERNPflpqafNNMAVICHYGEQ 121
Cdd:TIGR02917 710 GDLYLRQKDYPAAIQAYRKALKRAPS----SQNAIKLHRALLASGNTAEAVKTLEAWLKTHP------NDAVLRTALAEL 779

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 669081     122 AILQGDSEIAEAWFDQAAE-YWKQAIGLTPGNYIEAQN 158
Cdd:TIGR02917 780 YLAQKDYDKAIKHYQTVVKkAPDNAVVLNNLAWLYLEL 817
EST1_DNA_bind pfam10373
Est1 DNA/RNA binding domain; Est1 is a protein which recruits or activates telomerase at the ...
 76-115 9.38e-03

Est1 DNA/RNA binding domain; Est1 is a protein which recruits or activates telomerase at the site of polymerization. This is the DNA/RNA binding domain of EST1.


Pssm-ID: 431239  Cd Length: 279  Bit Score: 35.47  E-value: 9.38e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 669081      76 YN-IGLIHTSNGEHTKALEYYFRAL-ERNPFlPQAFNNMAVI 115
Cdd:pfam10373  19 YNqLGVIALYVGNHLDAVYYFLRSLlSRNPF-PTAKNNLELL 59
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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