|
Name |
Accession |
Description |
Interval |
E-value |
| TPR_MLP1_2 |
pfam07926 |
TPR/MLP1/MLP2-like protein; The sequences featured in this family are similar to a region of ... |
1040-1166 |
2.48e-26 |
|
TPR/MLP1/MLP2-like protein; The sequences featured in this family are similar to a region of human TPR protein and to yeast myosin-like proteins 1 (MLP1) and 2 (MLP2). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores. TPR is thought to be a component of nuclear pore complex- attached intra-nuclear filaments, and is implicated in nuclear protein import. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerization of kinase domains or by targeting these kinases to the nuclear pore complex. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity.
Pssm-ID: 462316 [Multi-domain] Cd Length: 129 Bit Score: 106.18 E-value: 2.48e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1040 LSSVQNEVQEALQRASTALSNEQQARRDCQEQAKIAVEAQNKYERELMLHAADVEALQAAKEQVSKMASVRQHLEETTQK 1119
Cdd:pfam07926 3 LSSLQSEIKRLKEEAADAEAQLQKLQEDLEKQAEIAREAQQNYERELVLHAEDIKALQALREELNELKAEIAELKAEAES 82
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 633226 1120 AESQLLECKASWEERERMLKDEVSKCVCRCEDLEKQNRLLHDQIEKL 1166
Cdd:pfam07926 83 AKAELEESEESWEEQKKELEKELSELEKRIEDLNEQNKLLHDQLESL 129
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
832-1619 |
2.28e-22 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 105.91 E-value: 2.28e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 832 ETKQRLSSQIEKLEHEISHLKKKLeNEVEQRHTLTRNLDVQLLDTKRQLDTETNlhlNTKELLKNAQKEIATLKQHLSNM 911
Cdd:TIGR02168 239 EELEELQEELKEAEEELEELTAEL-QELEEKLEELRLEVSELEEEIEELQKELY---ALANEISRLEQQKQILRERLANL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 912 EVQVASQSSQRTGKGQPSN--KEDVDDLVSQLRQTEEQVNDLKERLKTStsnVEQYQAMVTSLEEslnKEKQVTEEVRKN 989
Cdd:TIGR02168 315 ERQLEELEAQLEELESKLDelAEELAELEEKLEELKEELESLEAELEEL---EAELEELESRLEE---LEEQLETLRSKV 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 990 IEVRLKEsaefqTQLEKKLMEVEKEKQELQDDKRRAIESMEQQLSEL----KKTLSSVQNEVQEALQRASTALSNEQQAR 1065
Cdd:TIGR02168 389 AQLELQI-----ASLNNEIERLEARLERLEDRRERLQQEIEELLKKLeeaeLKELQAELEELEEELEELQEELERLEEAL 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1066 RDCQEQAKIAVEAQNKYERELMLHAADVEALQAAKEQVSKMA-SVRQHLEETTQKAE-----SQLLECKASWE------- 1132
Cdd:TIGR02168 464 EELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSeGVKALLKNQSGLSGilgvlSELISVDEGYEaaieaal 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1133 -ERERMLKDEVSKCVCRCEDLEKQNRL-----------LHDQIEKLSDKVVASvKEGVQGPLNVSLSEEGKSQEQILEIL 1200
Cdd:TIGR02168 544 gGRLQAVVVENLNAAKKAIAFLKQNELgrvtflpldsiKGTEIQGNDREILKN-IEGFLGVAKDLVKFDPKLRKALSYLL 622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1201 RFIRREKEIAETrfeVAQVESLRYRQRVELLERELQELEDSLNAEREKVQvtAKTMAQHEELMKKTETMNVVMETNKMLR 1280
Cdd:TIGR02168 623 GGVLVVDDLDNA---LELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTN--SSILERRREIEELEEKIEELEEKIAELE 697
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1281 EEKERLEQDLQQMQAKVRKLELDILPLQEANAELSEKSGMLQAEKKLLEEDVKRWKARNQHLvSQQKDPDTEEYRKLLSE 1360
Cdd:TIGR02168 698 KALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTEL-EAEIEELEERLEEAEEE 776
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1361 KEVHTKRIQQLTEEIGRLKAEIARSNASLTNNQNLIQSLKEDLNKVRTEKETIQKDLDAKIIDIQEKVKTITQVKKIGRR 1440
Cdd:TIGR02168 777 LAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIES 856
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1441 YKTQYEELKAQQDKvmetsaqssgdHQEQHVSVQ-EMQELKETLNQAETKSKSLESQVENLQKTLSEKETEARNLQEQTV 1519
Cdd:TIGR02168 857 LAAEIEELEELIEE-----------LESELEALLnERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLA 925
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1520 QLQSELSRLRQD---LQDRTTQEEQLRQQ--------ITEKEEKTRKAIVAAKSKIAHLAGVKDQLTKENEELKQRNGAL 1588
Cdd:TIGR02168 926 QLELRLEGLEVRidnLQERLSEEYSLTLEeaealenkIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFL 1005
|
810 820 830
....*....|....*....|....*....|.
gi 633226 1589 DQQKDELdvriTALKSQYEGRISRLERELRE 1619
Cdd:TIGR02168 1006 TAQKEDL----TEAKETLEEAIEEIDREARE 1032
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
785-1649 |
1.02e-21 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 103.61 E-value: 1.02e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 785 KKEKEMLKLSEVRLSQQRESLLAEQRGQNLlltnlQTIQGilERSETETKQRLSSQIEKLE-HEISHLKKKLENEVEQRH 863
Cdd:TIGR02169 171 KKEKALEELEEVEENIERLDLIIDEKRQQL-----ERLRR--EREKAERYQALLKEKREYEgYELLKEKEALERQKEAIE 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 864 TLTRNLDVQLLDTKRQLD--------TETNLHLNTKELLKNAQKEIATLKQHLSNMEVQVASQSSQrtgkgQPSNKEDVD 935
Cdd:TIGR02169 244 RQLASLEEELEKLTEEISelekrleeIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERS-----IAEKERELE 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 936 DLVSQLRQTEEQVNDLKERLKTSTSNVEQYQAMVTSLEESLNKEKQVTEEVRKNIEvrlKESAEFQTqLEKKLMEVEKEK 1015
Cdd:TIGR02169 319 DAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELE---EVDKEFAE-TRDELKDYREKL 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1016 QELQDdKRRAIESMEQQLSELKKTLSSVQNEVQEALQRASTALSNEQQARRDCQEQAKiaveaqnKYERELMLHAADVEA 1095
Cdd:TIGR02169 395 EKLKR-EINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIK-------KQEWKLEQLAADLSK 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1096 lqaAKEQVSKMASVRQHLEETTQKAESQLLECKAS---WEERERMLKDEVskcvcrcEDLEKQNRLLHDQIEKLsdkvvA 1172
Cdd:TIGR02169 467 ---YEQELYDLKEEYDRVEKELSKLQRELAEAEAQaraSEERVRGGRAVE-------EVLKASIQGVHGTVAQL-----G 531
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1173 SVKEGVQGPL---------NVSLSEEGKSQEQIleilRFIRREKEIAETRFEVAQVESLRYRQRVELLERELQELEDSLN 1243
Cdd:TIGR02169 532 SVGERYATAIevaagnrlnNVVVEDDAVAKEAI----ELLKRRKAGRATFLPLNKMRDERRDLSILSEDGVIGFAVDLVE 607
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1244 AEReKVQVTAKTMAQHEELMKKTETMNVVMETNKMLREEKERLEQD--LQQMQAKVRKLELDILPLQEANAELSEKSGML 1321
Cdd:TIGR02169 608 FDP-KYEPAFKYVFGDTLVVEDIEAARRLMGKYRMVTLEGELFEKSgaMTGGSRAPRGGILFSRSEPAELQRLRERLEGL 686
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1322 QAEKKLLEEDVKRWKARnqhlvsqqkdpdTEEYRKLLSEKEvhtKRIQQLTEEIGRLKAEIARSNASLTNNQNLIQSLKE 1401
Cdd:TIGR02169 687 KRELSSLQSELRRIENR------------LDELSQELSDAS---RKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQ 751
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1402 DLNKVRTEKETIQKDLD---AKIIDIQEKVKTI------TQVKKIGRRYKTQYEELKAQQDKVMETSAQSSGDHQEQHVS 1472
Cdd:TIGR02169 752 EIENVKSELKELEARIEeleEDLHKLEEALNDLearlshSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYL 831
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1473 VQEMQELKETLNQAETKSKSLESQVENLQKTLSEKETEARNLQEQTVQLQSELSRLRQDLQDRTTQEEQLRQQITEKEEK 1552
Cdd:TIGR02169 832 EKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQ 911
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1553 TRKAIVAAKSKIAHLAGVKDQLTKENEELKQRN---------GALDQQKDELDVRITALKS-------QYEGRISRLErE 1616
Cdd:TIGR02169 912 IEKKRKRLSELKAKLEALEEELSEIEDPKGEDEeipeeelslEDVQAELQRVEEEIRALEPvnmlaiqEYEEVLKRLD-E 990
|
890 900 910
....*....|....*....|....*....|...
gi 633226 1617 LREHQERHLEQRDEPQEPSNKVPEQQRQITLKT 1649
Cdd:TIGR02169 991 LKEKRAKLEEERKAILERIEEYEKKKREVFMEA 1023
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
672-1453 |
1.54e-18 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 93.20 E-value: 1.54e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 672 LKQLQEIFENYKKEKAENEKIQNE---QLEKLQEQVTDLRSQNTKISTQLDFASKRYEMLQDNVEGYRREITSLHERNQK 748
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEEltaELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLAN 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 749 LTATTQKQEQIINTMTQDLRGANEKLAVAEVRAENLKKEKEMLKLSEVRLSQQRESLLAEQRGQNLLLTNLQTIQGILER 828
Cdd:TIGR02168 314 LERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLEL 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 829 SETETK---QRLSSQIEKLEHEISHLKKKLENEVEQRHTLTRNLDVQLLDTKRQLDTETNLHLNTK-ELLKNAQKEIATL 904
Cdd:TIGR02168 394 QIASLNneiERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLeEALEELREELEEA 473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 905 KQHLSNMEVQVASQSSQRTG-KGQPSNKEDVDDLVSQLRQTEEQVNDLKERLKTSTSNVEQY-QAMVTSLEESLNKEKQV 982
Cdd:TIGR02168 474 EQALDAAERELAQLQARLDSlERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYeAAIEAALGGRLQAVVVE 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 983 TEE-VRKNIEVRLKESAEFQTQLEKKLMEvEKEKQELQDDKRRAIESMEQQLSELKKTLSSVQNEVQEALQRASTA--LS 1059
Cdd:TIGR02168 554 NLNaAKKAIAFLKQNELGRVTFLPLDSIK-GTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVddLD 632
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1060 NEQQARRDCQEQAKIAVEAQNKYERELMLHAADVEALQAAKEQVSKMASVRQHLEETTQKAESQLLECKASWEERERmLK 1139
Cdd:TIGR02168 633 NALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEE-LE 711
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1140 DEVSKCVCRCEDLEKQNRLLHDQIEKLSDKVvasvkEGVQGPLNVSLSEEGKSQEQILEilrfIRREKEIAETRFEVAQV 1219
Cdd:TIGR02168 712 EELEQLRKELEELSRQISALRKDLARLEAEV-----EQLEERIAQLSKELTELEAEIEE----LEERLEEAEEELAEAEA 782
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1220 ESLRYRQRVELLERELQELEDSLNAEREKVQvtaktmAQHEELMKKTETMNVVMETNKMLREEKERLEQDLQQMQAKVRK 1299
Cdd:TIGR02168 783 EIEELEAQIEQLKEELKALREALDELRAELT------LLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIES 856
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1300 LELDILPLQEANAELSEKSGMLQAEKKLLEEDVKRWKARNQHLVSQQKDPDtEEYRKLLSEKEVHTKRIQQLTEEIGRLK 1379
Cdd:TIGR02168 857 LAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELE-SKRSELRRELEELREKLAQLELRLEGLE 935
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 633226 1380 AEIARSNASLTNNQNLiqSLKEDLNKVRtEKETIQKDLDAKIIDIQEKVKTITQVKKIG----RRYKTQYEELKAQQD 1453
Cdd:TIGR02168 936 VRIDNLQERLSEEYSL--TLEEAEALEN-KIEDDEEEARRRLKRLENKIKELGPVNLAAieeyEELKERYDFLTAQKE 1010
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
227-1066 |
4.45e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 88.58 E-value: 4.45e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 227 ENKKEEVSRLEEqmnglktSNEHLQKhVEDLLTKLKEAK---EQQASMEEKFHnELNAHIK------LSNLYKSAADDSE 297
Cdd:TIGR02168 172 ERRKETERKLER-------TRENLDR-LEDILNELERQLkslERQAEKAERYK-ELKAELRelelalLVLRLEELREELE 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 298 AKSNELTRAVEELHKLLKEAGEANKAIQDHLLEVEqskdqmekEMLEKIGRLEKELENANDLLSATKRKGAILSEEELAA 377
Cdd:TIGR02168 243 ELQEELKEAEEELEELTAELQELEEKLEELRLEVS--------ELEEEIEELQKELYALANEISRLEQQKQILRERLANL 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 378 MSPTAAAVAKIVKPGMKLTELynayvetqdQLLLEKLENKrinkyLDEIVKEVEAKAPILKRQREEYERAQKAVASLSVK 457
Cdd:TIGR02168 315 ERQLEELEAQLEELESKLDEL---------AEELAELEEK-----LEELKEELESLEAELEELEAELEELESRLEELEEQ 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 458 LEQAMKEIQRLQEDTDKANKQSSVLERDNRRMEIQVKDLSQQIRVLLMELEEARGNHVIRDEEVSSADissssevisqhl 537
Cdd:TIGR02168 381 LETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEE------------ 448
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 538 vsyrnIEELQQQNQRLLVALRELgetreREEQETTSSKITELQLKLESALTELEQLRKSRQHQMQLVDSiVRQRDMYRIL 617
Cdd:TIGR02168 449 -----LEELQEELERLEEALEEL-----REELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEG-VKALLKNQSG 517
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 618 LSQTTGVAIPLH--------------ASSLDDV---------SLASTPKRPSTSQTvsTPAPVPVIESTEAIEAKAALKQ 674
Cdd:TIGR02168 518 LSGILGVLSELIsvdegyeaaieaalGGRLQAVvvenlnaakKAIAFLKQNELGRV--TFLPLDSIKGTEIQGNDREILK 595
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 675 LQEIFENYKKEKAE-NEKIQN------------EQLEKLQEQVTDLRSQNTKISTQLDFASKRYEMLQdnveGYRREITS 741
Cdd:TIGR02168 596 NIEGFLGVAKDLVKfDPKLRKalsyllggvlvvDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVITG----GSAKTNSS 671
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 742 LHERNQKLTATTQKQEQiintMTQDLRGANEKLAVAEVRAENLKKEKEMLKLSEVRLSQQRESLLAEqrgqnllltnlqt 821
Cdd:TIGR02168 672 ILERRREIEELEEKIEE----LEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKD------------- 734
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 822 iqgilersetetKQRLSSQIEKLEHEISHLKKKLENEVEQRHTLTRNLDVQLLDTKRQLDTETNLhlntKELLKNAQKEI 901
Cdd:TIGR02168 735 ------------LARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEEL----EAQIEQLKEEL 798
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 902 ATLKQHLS--NMEVQVASQSSQRTGKGQPSNKEDVDDLVSQLRQTEEQVNDLKERLKTSTSNVEQYQAMVTSLEESLN-- 977
Cdd:TIGR02168 799 KALREALDelRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEal 878
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 978 -KEKQVTEEVRKNIEVRLKESAEFQTQLEKKLMEVEKEKQELQD---DKRRAIESMEQQLSELKKTLSSVQN-EVQEALQ 1052
Cdd:TIGR02168 879 lNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREklaQLELRLEGLEVRIDNLQERLSEEYSlTLEEAEA 958
|
890
....*....|....
gi 633226 1053 RASTALSNEQQARR 1066
Cdd:TIGR02168 959 LENKIEDDEEEARR 972
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
974-1640 |
5.10e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 88.19 E-value: 5.10e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 974 ESLNKEKQVTEEVRKNIEVRLKESAEFQTQLEKKLMEVEKEKQELQ---DDKRRAIESMEQQLSELKKTLSSVQNEVQEA 1050
Cdd:TIGR02168 242 EELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQkelYALANEISRLEQQKQILRERLANLERQLEEL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1051 LQRASTALSNEQQARRDCQEQAKIAVEAQNKYERELMLHAADVEALQAAKeqvSKMASVRQHLEeTTQKAESQLLECKAS 1130
Cdd:TIGR02168 322 EAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELE---SRLEELEEQLE-TLRSKVAQLELQIAS 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1131 WEERERMLKDEVskcvcrcEDLEKQNRLLHDQIEKLSDKVVASVKEGVQGplnvSLSEEGKSQEQILEILRFIRREKEIA 1210
Cdd:TIGR02168 398 LNNEIERLEARL-------ERLEDRRERLQQEIEELLKKLEEAELKELQA----ELEELEEELEELQEELERLEEALEEL 466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1211 ETRFEVAQVESL-------RYRQRVELLERELQELEDSLNAEREKVQVtAKTMAQH-----------EELMKKTETM--- 1269
Cdd:TIGR02168 467 REELEEAEQALDaaerelaQLQARLDSLERLQENLEGFSEGVKALLKN-QSGLSGIlgvlselisvdEGYEAAIEAAlgg 545
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1270 ---NVVMETNKMLREEKERLEQDLqqmQAKVRKLELDILPLQEANAE----LSEKSGMLQAEKKLLEEDVKRWKARN--- 1339
Cdd:TIGR02168 546 rlqAVVVENLNAAKKAIAFLKQNE---LGRVTFLPLDSIKGTEIQGNdreiLKNIEGFLGVAKDLVKFDPKLRKALSyll 622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1340 -QHLVSQQKDPDTEEYRKLLSEKEVHT---------------------------KRIQQLTEEIGRLKAEIARSNASLTN 1391
Cdd:TIGR02168 623 gGVLVVDDLDNALELAKKLRPGYRIVTldgdlvrpggvitggsaktnssilerrREIEELEEKIEELEEKIAELEKALAE 702
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1392 NQNLIQSLKEDLNKVRTEKETIQKDLDAKIIDIQEKVKTITQVKkigRRYKTQYEELKAQQDKVMETSAQSSGDHQEQHV 1471
Cdd:TIGR02168 703 LRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLE---ERIAQLSKELTELEAEIEELEERLEEAEEELAE 779
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1472 SVQEMQELKETLNQAETKSKSLESQVENLQKTLSEKETEARNLQEQTVQLQSELSRLRQDLQDRTTQEEQLRQQITEKE- 1550
Cdd:TIGR02168 780 AEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAa 859
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1551 --EKTRKAIVAAKSKIAHLAGVKDQLTKENEELKQRNGALDQQKDELDVRITALK----------SQYEGRISRLERELR 1618
Cdd:TIGR02168 860 eiEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRreleelreklAQLELRLEGLEVRID 939
|
730 740
....*....|....*....|...
gi 633226 1619 EHQERHLEQ-RDEPQEPSNKVPE 1640
Cdd:TIGR02168 940 NLQERLSEEySLTLEEAEALENK 962
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
56-1053 |
5.42e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 84.72 E-value: 5.42e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 56 EIEKRLSHSQERLVNETRECQSLRLELEKLNNQLKAlTEKNKELEiAQDRNIAIQSQFTRtKEELEAEKRDLIRTNERLS 135
Cdd:TIGR02168 176 ETERKLERTRENLDRLEDILNELERQLKSLERQAEK-AERYKELK-AELRELELALLVLR-LEELREELEELQEELKEAE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 136 QELEYLTEDVKRLNEKLKESNTTKGELQLKLDELQASDVSVKYREKRLEQEKELLHSQNTWLNTELKTKTDELLALGREK 215
Cdd:TIGR02168 253 EELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKL 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 216 gneilelkcnlENKKEEVSRLEEqmnglktsnehlqkhvedlltKLKEAKEQQASMEEKFhnelnahiklsnlyksaadd 295
Cdd:TIGR02168 333 -----------DELAEELAELEE---------------------KLEELKEELESLEAEL-------------------- 360
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 296 seaksneltravEELHKLLKEAGEANKAIQDHLLEVEQSKDQMEKEmlekIGRLEKELENANDLLSATKRKGAILSEEel 375
Cdd:TIGR02168 361 ------------EELEAELEELESRLEELEEQLETLRSKVAQLELQ----IASLNNEIERLEARLERLEDRRERLQQE-- 422
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 376 aamsptaaavakivkpgmkLTELYNAYVETQDQLLLEKLEnkRINKYLDEIVKEVEAKAPILKRQREEYERAQKAVASLS 455
Cdd:TIGR02168 423 -------------------IEELLKKLEEAELKELQAELE--ELEEELEELQEELERLEEALEELREELEEAEQALDAAE 481
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 456 VKLEQAMKEI---QRLQEDTDKANKQSSVLERDNRRMEIQVKDLSQQIRV-------LLMELEEARGNHVIRDEEVssad 525
Cdd:TIGR02168 482 RELAQLQARLdslERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVdegyeaaIEAALGGRLQAVVVENLNA---- 557
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 526 ISSSSEVISQHLVSYRNIEELQQQNQRLLVALRELGETREREEQETTSSkitelqlkLESALTELEQLRKSRQHQMQLVD 605
Cdd:TIGR02168 558 AKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKD--------LVKFDPKLRKALSYLLGGVLVVD 629
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 606 SIVRQRDMYRILLSQTTGVaiplhasSLDDVSLastpkrpsTSQTVSTPAPVPVIESTeaIEAKAALKQLQEIFEnykkE 685
Cdd:TIGR02168 630 DLDNALELAKKLRPGYRIV-------TLDGDLV--------RPGGVITGGSAKTNSSI--LERRREIEELEEKIE----E 688
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 686 KAENEKIQNEQLEKLQEQVTDLRSQNTKISTQLDFASKRYEMLQDNVEGYRREITSLHERNQKLTATTQKQEQIINTMTQ 765
Cdd:TIGR02168 689 LEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEE 768
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 766 DLRGANEKLAVAEVRAENLKKEKEMLKLsevRLSQQRESLLAEQRGQNLLLTNLQTIQGILERSETETK------QRLSS 839
Cdd:TIGR02168 769 RLEEAEEELAEAEAEIEELEAQIEQLKE---ELKALREALDELRAELTLLNEEAANLRERLESLERRIAaterrlEDLEE 845
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 840 QIEKLEHEISHLKKKLENEVEQRHTLTRNLDVQLldtkrqldtetnlhlntkELLKNAQKEIATLKQHLSNMEVQVASQS 919
Cdd:TIGR02168 846 QIEELSEDIESLAAEIEELEELIEELESELEALL------------------NERASLEEALALLRSELEELSEELRELE 907
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 920 SQRtgkgqpsnkedvDDLVSQLRQTEEQVNDLKERLktstsnvEQYQAMVTSLEESLNKEKQVTEEVRKNIEVRLKESAE 999
Cdd:TIGR02168 908 SKR------------SELRRELEELREKLAQLELRL-------EGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEE 968
|
970 980 990 1000 1010
....*....|....*....|....*....|....*....|....*....|....
gi 633226 1000 fqtQLEKKLMEVEKEKQELQDDKRRAIESMEqQLSELKKTLSSVQNEVQEALQR 1053
Cdd:TIGR02168 969 ---EARRRLKRLENKIKELGPVNLAAIEEYE-ELKERYDFLTAQKEDLTEAKET 1018
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
27-884 |
4.22e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 82.03 E-value: 4.22e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 27 KFLADQQSEID-GLKGRHEKFKVESEQQYFEIEKRLSHSQERLVNETRECQSLRLELEKlnnqlkALTEKNKELEIAQDR 105
Cdd:TIGR02168 216 KELKAELRELElALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRL------EVSELEEEIEELQKE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 106 NIAIQSQftrtKEELEAEKRDLIRTNERLSQELEYLTEDVKRLNEKLKESNTTKGELQLKLDELQASDVSVKYREKRLEQ 185
Cdd:TIGR02168 290 LYALANE----ISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEA 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 186 EKELLHSQNTWLNTELktktdellalgREKGNEILELKCNLENKKEEVSRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAK 265
Cdd:TIGR02168 366 ELEELESRLEELEEQL-----------ETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAE 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 266 EQQASMEEKFHNElnahiklsnlyksAADDSEAKSNELTRAVEELHKLLKEAGEANKAIQDHLLEVEQSKDQMEKEM--L 343
Cdd:TIGR02168 435 LKELQAELEELEE-------------ELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQenL 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 344 EKIGRLEKELENANDLLSATK-RKGAILSEEE------LAAMSPTAAAVAkivkpgMKLTELYNAYVETQDQ-------- 408
Cdd:TIGR02168 502 EGFSEGVKALLKNQSGLSGILgVLSELISVDEgyeaaiEAALGGRLQAVV------VENLNAAKKAIAFLKQnelgrvtf 575
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 409 LLLEKLENKRINKYLDEIVKEVEAKAPILKRQREEYERAQKAVASL------SVKLEQAMKEIQRLQEDTD--------- 473
Cdd:TIGR02168 576 LPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLlggvlvVDDLDNALELAKKLRPGYRivtldgdlv 655
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 474 ---------KANKQSSVLERDN--RRMEIQVKDLSQQIRVLLMELEEARGNHVIRDEEVSSADISSSSEVISQHLVSYR- 541
Cdd:TIGR02168 656 rpggvitggSAKTNSSILERRReiEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDl 735
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 542 NIEELQQQNQRLLVALRELGETREREEQETTSSKITELQLKLESALTELEQLRKSRQHQMQLVDSIvrqRDMYRILLSQT 621
Cdd:TIGR02168 736 ARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKAL---REALDELRAEL 812
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 622 TGVAIPLHASSLDDVSLastpkrpstsqtvstpapvpvieSTEAIEAKAALKQLQEIFENykkekaenekiQNEQLEKLQ 701
Cdd:TIGR02168 813 TLLNEEAANLRERLESL-----------------------ERRIAATERRLEDLEEQIEE-----------LSEDIESLA 858
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 702 EQVTDLRSQNTKISTQLDFASKRYEMLQdnvegyrREITSLHERNQKLTATTQKQEQIINTMTQDLRGANEKLAVAEVRA 781
Cdd:TIGR02168 859 AEIEELEELIEELESELEALLNERASLE-------EALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRL 931
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 782 ENLkkekemlklsEVRLSQQRESLLAEqrgQNLLLTNLQTIQGILERSETETKQRLSS---QIEKL-------EHEISHL 851
Cdd:TIGR02168 932 EGL----------EVRIDNLQERLSEE---YSLTLEEAEALENKIEDDEEEARRRLKRlenKIKELgpvnlaaIEEYEEL 998
|
890 900 910
....*....|....*....|....*....|...
gi 633226 852 KKKLENEVEQRHTLTRNLDvQLLDTKRQLDTET 884
Cdd:TIGR02168 999 KERYDFLTAQKEDLTEAKE-TLEEAIEEIDREA 1030
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
667-1628 |
1.50e-14 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 80.09 E-value: 1.50e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 667 EAKAALKQLQEIFENYKKEKAEN--EKIQNEQLEKLQEQVTDLR------SQNTKISTQLDFASKRYEMLQDNVEGYRRE 738
Cdd:TIGR00606 167 EGKALKQKFDEIFSATRYIKALEtlRQVRQTQGQKVQEHQMELKylkqykEKACEIRDQITSKEAQLESSREIVKSYENE 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 739 ITSLHERNQKLTATTQKQEQIINTMTQdlrganekLAVAEVRAENLKKEKEMLKLSEVRLSQQRESLLAEQRGQNLLLTN 818
Cdd:TIGR00606 247 LDPLKNRLKEIEHNLSKIMKLDNEIKA--------LKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREKE 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 819 LQTIQGILERSETETKQRLSSQiEKLEHEISHLKKKLENEVEQRHTLTRNLDVQLLDTKRQLDTETNLHLNTKELlknaq 898
Cdd:TIGR00606 319 RELVDCQRELEKLNKERRLLNQ-EKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSERQI----- 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 899 KEIATLKQHLSNMEVQVASQSSQRTGKGQPSNKEDVDDLVSQLRQTEEQVNDLKERLKTSTSNVEQYQAMVTSLEESLNK 978
Cdd:TIGR00606 393 KNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDR 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 979 EKQVTEEVRKNI-EVRLKESAEFQTQLEKKLMEVEKEKQELQDDKRRAIESMEQqLSELKKTLSSVQNEVQEALQRASTA 1057
Cdd:TIGR00606 473 ILELDQELRKAErELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQ-LNHHTTTRTQMEMLTKDKMDKDEQI 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1058 LSNEQQARRDCQEQAKiavEAQNKYERELMLHAADVEALQAaKEQVSKMASVRQHLEETTQKAESQLleckASWEERERM 1137
Cdd:TIGR00606 552 RKIKSRHSDELTSLLG---YFPNKKQLEDWLHSKSKEINQT-RDRLAKLNKELASLEQNKNHINNEL----ESKEEQLSS 623
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1138 LKDEVSKcVCRCEDLEKQNRLLHDQIEKLS-DKVVASVKEGVQGPLNVSLSEEGKSQEQILEilRFIRREKEIAETrfev 1216
Cdd:TIGR00606 624 YEDKLFD-VCGSQDEESDLERLKEEIEKSSkQRAMLAGATAVYSQFITQLTDENQSCCPVCQ--RVFQTEAELQEF---- 696
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1217 aqVESLRYRQRVELLERELQELEDSlNAEREKVQVTAKTMAQHEELMKKTETMNVVMETNKMLREEKERLEQDLQQMQak 1296
Cdd:TIGR00606 697 --ISDLQSKLRLAPDKLKSTESELK-KKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQE-- 771
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1297 vrKLELDILPLQEANAELSEKSGMLQAEKKLLEEDVKRWKARNQHLVSQQKDPDTEEYRKLLSEKEVHTKRIQQLTEEIG 1376
Cdd:TIGR00606 772 --TLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNR 849
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1377 RLKAEiarsnasltnNQNLIQSLKEDLNKVRTEKETIQKDLDAKIIDIQEKVKTITQVKKIGRRYKTQYEEL----KAQQ 1452
Cdd:TIGR00606 850 KLIQD----------QQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDspleTFLE 919
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1453 DKVMETSAQSSGDHQEQHVSVQEMQELKETLNQAETKSKSLESQV-ENLQKTLSEKETEARNL-------QEQTVQLQSE 1524
Cdd:TIGR00606 920 KDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIqDGKDDYLKQKETELNTVnaqleecEKHQEKINED 999
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1525 LSRLRQDLQDRTTQEEQLRQQITEKEEKTRKAIVAAKSKIAHLAGVKDQLTKENEELKQRNGALDQQKDElDVRITALKS 1604
Cdd:TIGR00606 1000 MRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKRN-HVLALGRQK 1078
|
970 980
....*....|....*....|....
gi 633226 1605 QYEGRISRLERELREHQERHLEQR 1628
Cdd:TIGR00606 1079 GYEKEIKHFKKELREPQFRDAEEK 1102
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
36-620 |
8.05e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 77.67 E-value: 8.05e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 36 IDGLKGRHEKFKVESEQ--QYFEIEKRLshsqerlvnETRECQSLRLELEKLNNQLKALTEKNKELEIAQDRNIA----I 109
Cdd:COG1196 195 LGELERQLEPLERQAEKaeRYRELKEEL---------KELEAELLLLKLRELEAELEELEAELEELEAELEELEAelaeL 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 110 QSQFTRTKEELEAEKRDLIRTNER---LSQELEYLTEDVKRLNEKLKESNTTKGELQLKLDELQASDVSVKYREKRLEQE 186
Cdd:COG1196 266 EAELEELRLELEELELELEEAQAEeyeLLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEE 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 187 KELLHSQNTWLNTELKTKTDELLALGREKGNEILElkcnLENKKEEVSRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKE 266
Cdd:COG1196 346 LEEAEEELEEAEAELAEAEEALLEAEAELAEAEEE----LEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEE 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 267 QQASMEEkfhnelnahiklsnlyksAADDSEAKSNELTRAVEELHKLLKEAGEANKAIQDHLLEVEQSKDQMEKEMLEKI 346
Cdd:COG1196 422 ELEELEE------------------ALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELL 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 347 GRLEKELENANDLLSATKRKGAILSEEELAAMSPTAAAVAKIVKPGMKLTELYNAYVETQDQLLLEKLENKRinkyldei 426
Cdd:COG1196 484 EELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVED-------- 555
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 427 vkEVEAKAPILKRQREEYERAQKAVASLSVKLEQAMKEIQRLQEDTDKANKQSSVLERDNRRMEIQVKDLSQQIRVLLME 506
Cdd:COG1196 556 --DEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLE 633
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 507 leeaRGNHVIRDEEVSSADISSSSEVISQHLVSYRNIEELQQQNQRLLVALRELGETREREEQETTSSKITELQLKLESA 586
Cdd:COG1196 634 ----AALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEEREL 709
|
570 580 590
....*....|....*....|....*....|....
gi 633226 587 LTELEQLRKSRQHQMQLVDSIVRQRDMYRILLSQ 620
Cdd:COG1196 710 AEAEEERLEEELEEEALEEQLEAEREELLEELLE 743
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1353-1659 |
8.26e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 77.67 E-value: 8.26e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1353 EYRKLLSEKEVHTKRIQQLTEEIGRLKAEIARSNASltnnqnlIQSLKEDLNKVRTEKETIQKDLDAKIIDIQEKVKTIT 1432
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAE-------LEELRLELEELELELEEAQAEEYELLAELARLEQDIA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1433 QVKKIGRRYKTQYEELKAQQDkvmETSAQSSGDHQEQHVSVQEMQELKETLNQAETKSKSLESQVENLQKTLSEKETEAR 1512
Cdd:COG1196 306 RLEERRRELEERLEELEEELA---ELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELE 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1513 NLQEQTVQLQSELSRLRQDLQDRTTQEEQLRQQITEKEEktrkAIVAAKSKIAHLAGVKDQLTKENEELKQRNGALDQQK 1592
Cdd:COG1196 383 ELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEE----ELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEE 458
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 633226 1593 DELDVRITALKSQYEGRISRLERELREHQErhLEQRDEPQEPSNKVPEQQRQITLKTTPASGERGIA 1659
Cdd:COG1196 459 EALLELLAELLEEAALLEAALAELLEELAE--AAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLA 523
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
413-1174 |
1.31e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 77.02 E-value: 1.31e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 413 KLENKRIN-KYLDEIVKEVEAKAPILKRQ----------REEYERAQKAVASLSvkLEQAMKEIQRLQEDTDKANKQSSV 481
Cdd:TIGR02168 180 KLERTRENlDRLEDILNELERQLKSLERQaekaerykelKAELRELELALLVLR--LEELREELEELQEELKEAEEELEE 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 482 LERDNRRMEIQVKDLSQQIRVLLMELEEARG---NHVIRDEEVSSADISSSSEVISQHLVSYRNIEELQQQNQRLLVALR 558
Cdd:TIGR02168 258 LTAELQELEEKLEELRLEVSELEEEIEELQKelyALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 559 ELgetrereeqETTSSKITELQLKLESALTELEQLRKSRQHQMQLVDSIVRQRDMYRILLSQTTgvaiplhassLDDVSL 638
Cdd:TIGR02168 338 EL---------AELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLE----------LQIASL 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 639 ASTPKRPSTSQTVSTPAPVPVIESTEAIEAKAALKQLQEIFENYKKEKAENEKIQ------NEQLEKLQEQVTDLRSQNT 712
Cdd:TIGR02168 399 NNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQeelerlEEALEELREELEEAEQALD 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 713 KISTQLDFASKRYEMLQD---NVEGYRREITSLHERNQKLTATTQKQEQIINT-------MTQDLRGANEKLAV----AE 778
Cdd:TIGR02168 479 AAERELAQLQARLDSLERlqeNLEGFSEGVKALLKNQSGLSGILGVLSELISVdegyeaaIEAALGGRLQAVVVenlnAA 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 779 VRAENLKKEKEMLKLSEVRLSQQRESLLAEQRGQnlLLTNLQTIQGILERSETeTKQRLSSQIEKLeheISHLK--KKLE 856
Cdd:TIGR02168 559 KKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDRE--ILKNIEGFLGVAKDLVK-FDPKLRKALSYL---LGGVLvvDDLD 632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 857 NEVEQRHTLTRNLDVQLLD----------TKRQLDTETNLhLNTKELLKNAQKEIATLKQHLSNMEVQVASQSSQRTGKg 926
Cdd:TIGR02168 633 NALELAKKLRPGYRIVTLDgdlvrpggviTGGSAKTNSSI-LERRREIEELEEKIEELEEKIAELEKALAELRKELEEL- 710
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 927 qpsnKEDVDDLVSQLRQTEEQVNDLKERLKTSTSNVEQYQAMVTSLEESLNKEKQVTEEVRKNIEvrlkesaefqtQLEK 1006
Cdd:TIGR02168 711 ----EEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLE-----------EAEE 775
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1007 KLMEVEKEKQELQDDkrraIESMEQQLSELKKTLSSVQNEVQEALQRASTALSNEQQARRDCQEQAKIAVEAQNKYERel 1086
Cdd:TIGR02168 776 ELAEAEAEIEELEAQ----IEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEE-- 849
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1087 mlhaadvealqaAKEQVSKMASVRQHLEETTQKAESQL---LECKASWEERERMLKDEVSKCVCRCEDLEKQNRLLHDQI 1163
Cdd:TIGR02168 850 ------------LSEDIESLAAEIEELEELIEELESELealLNERASLEEALALLRSELEELSEELRELESKRSELRREL 917
|
810
....*....|.
gi 633226 1164 EKLSDKVVASV 1174
Cdd:TIGR02168 918 EELREKLAQLE 928
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
671-1378 |
3.03e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 75.86 E-value: 3.03e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 671 ALKQLQEIFENYKKEKAENEKIQNEQLEKLQEQVTDLRSQNTKISTQLDFASKRYEMLQDNVEGYRREITSLHERNQKLT 750
Cdd:TIGR02168 292 ALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELE 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 751 ATTQKQEQIINTMTQDLRGANEKLAVAEVRAENLKKEKEMLKLSEVRLSQQRESLLAEQrgQNLLLTNLQTIQGILERSE 830
Cdd:TIGR02168 372 SRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKL--EEAELKELQAELEELEEEL 449
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 831 TETKQRLSSQIEKLEhEISHLKKKLENEVEQRHTLTRNLDVQLLDTKRQLDTETNLHLNTKELLKNaQKEIATLKQHLSN 910
Cdd:TIGR02168 450 EELQEELERLEEALE-ELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKN-QSGLSGILGVLSE 527
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 911 -----------MEVQVASQSSQRTGKGQPSNKEDVDDL------------VSQLRQTEEQVNDL-----KERLKTSTSNV 962
Cdd:TIGR02168 528 lisvdegyeaaIEAALGGRLQAVVVENLNAAKKAIAFLkqnelgrvtflpLDSIKGTEIQGNDReilknIEGFLGVAKDL 607
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 963 EQYQ--------------AMVTSLEESLNKEKQVTEEVRKNIE---------VRLKESAEFQTQLekklMEVEKEKQELq 1019
Cdd:TIGR02168 608 VKFDpklrkalsyllggvLVVDDLDNALELAKKLRPGYRIVTLdgdlvrpggVITGGSAKTNSSI----LERRREIEEL- 682
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1020 ddkRRAIESMEQQLSELKKTLSSVQNEVQEALQRASTALSNEQQARRDCQEQAKIAVEAQNKYERELmlhaadvEALQAA 1099
Cdd:TIGR02168 683 ---EEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLE-------ERIAQL 752
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1100 KEQVSKMASVRQHLEETTQKAESQLLECKASWEERErmlkdevskcvcrcEDLEKQNRLLHDQIEKLSDkvvasvkegvq 1179
Cdd:TIGR02168 753 SKELTELEAEIEELEERLEEAEEELAEAEAEIEELE--------------AQIEQLKEELKALREALDE----------- 807
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1180 gpLNVSLSEEGKSQEQILEILRFIRREKEIAETRFEVAQVESLRYRQRVELLERELQELEDSLNAEREKVQVTAKTMAQH 1259
Cdd:TIGR02168 808 --LRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASL 885
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1260 EELMKKtetmnvvmetnkmLREEKERLEQDLQQMQAKVRKLELDILPLQEANAELSEKSGMLQAEKKLLEEdvkrwKARN 1339
Cdd:TIGR02168 886 EEALAL-------------LRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE-----RLSE 947
|
730 740 750
....*....|....*....|....*....|....*....
gi 633226 1340 QHLVSQQKDPdtEEYRKLLSEKEVHTKRIQQLTEEIGRL 1378
Cdd:TIGR02168 948 EYSLTLEEAE--ALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
930-1644 |
4.63e-13 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 75.56 E-value: 4.63e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 930 NKEDVDDLVSQLRQTEEQVNDLkERLKTSTSNVEQYQAMVTSLEESLNKEKQVTEEVRKNIEVRLKESAEfQTQLEKKLM 1009
Cdd:PTZ00121 1048 IDEDIDGNHEGKAEAKAHVGQD-EGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARK-AEEAKKKAE 1125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1010 EVEK-EKQELQDDKRRAIESMEQQlselkktlssvQNEVQEALQRASTALSNEQQARRDCQEQAKIAVEAQNKYERELML 1088
Cdd:PTZ00121 1126 DARKaEEARKAEDARKAEEARKAE-----------DAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELR 1194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1089 HAADVEALQAAK--EQVSKMASVRQHLEETTQKAESQLLECKASWEERERMLKDEVSKCVCRCEDLEKQNRLLHDQIEKL 1166
Cdd:PTZ00121 1195 KAEDARKAEAARkaEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKA 1274
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1167 SDKVVAsvkEGVQGPLNVSLSEEGKSQEQIleilrfiRREKEIAETRFEVAQVESLRYRQRVELLERELQELEdslnAER 1246
Cdd:PTZ00121 1275 EEARKA---DELKKAEEKKKADEAKKAEEK-------KKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKK----AEE 1340
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1247 EKVQVTAKTmAQHEELMKKTETMNVVMETNKMLREEKERLEQDLQQMQAKVRKLElDILPLQEANAELSEKSGMLQAEKK 1326
Cdd:PTZ00121 1341 AKKAAEAAK-AEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKAD-EAKKKAEEDKKKADELKKAAAAKK 1418
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1327 LLEEDVKRWKARNQHLVSQQKdpdTEEYRKllsEKEVHTKRIQQLTEEIGRLKAEIARSnasltnnqnlIQSLKEDLNKV 1406
Cdd:PTZ00121 1419 KADEAKKKAEEKKKADEAKKK---AEEAKK---ADEAKKKAEEAKKAEEAKKKAEEAKK----------ADEAKKKAEEA 1482
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1407 RTEKETIQKDLDAKiiDIQEKVKTITQVKKIGRRYKTQYEELKAQQDKVMETSAQSSGDHQEQHVSVQEMQELKETLNQA 1486
Cdd:PTZ00121 1483 KKADEAKKKAEEAK--KKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKA 1560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1487 ETKSKSLESQVENLQKTLSEKETE-ARNLQEQTVQLQSELSRLRQDL---QDRTTQEEQLRQQITEKEEKTRKAIVAAKS 1562
Cdd:PTZ00121 1561 EEKKKAEEAKKAEEDKNMALRKAEeAKKAEEARIEEVMKLYEEEKKMkaeEAKKAEEAKIKAEELKKAEEEKKKVEQLKK 1640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1563 KIAHLAGVKDQLTKENEELKQRNGALDQQKDELDVRITALKSQYEGRISRLERELREHQE-RHLEQRDEPQEPSNKVPEQ 1641
Cdd:PTZ00121 1641 KEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEaKKAEELKKKEAEEKKKAEE 1720
|
...
gi 633226 1642 QRQ 1644
Cdd:PTZ00121 1721 LKK 1723
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
53-595 |
7.39e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 74.59 E-value: 7.39e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 53 QYFEIEKRLSHSQERLVNETRECQSLRLELEKLNNQLKALTEKNKELEIAQDRNIAIQSQFTRTKEELEAEKRDLIRTNE 132
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 133 RLSQELEYLTEDVKRLNEKLKESNTTKGELQLKLDELQAS-DVSVKYREKRLEQEKELLHSQNTWLNTELKTKTDELLAL 211
Cdd:COG1196 313 ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEElEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAL 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 212 GR--EKGNEILELKCNLENKKEEVSRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKFHNELNAHIKLSNLY 289
Cdd:COG1196 393 RAaaELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEA 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 290 KSAADDSEAKSNELTRAVEELHKLLKEAGEANKAIQDHLLEVEQSKDQMEKEMLEKIGRLEKELENANDLLSATKRKGAI 369
Cdd:COG1196 473 ALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIV 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 370 LSEEELAAMSPTAAAVAKI----------VKPGMKLTELYNAYVETQDQLLLEKLENKRINKYLDEIVKEVEAKAPILKR 439
Cdd:COG1196 553 VEDDEVAAAAIEYLKAAKAgratflpldkIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARL 632
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 440 QREEYERAQKAVASLSVKLEQAMKEIQRLQEDTDKANKQSSVLERDNRRMEIQVKDLSQQIRVLLMELEEARGNHVIRDE 519
Cdd:COG1196 633 EAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEA 712
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 520 EVSSADISSSSEVISQHLVSYRNIEELQQQNQRLLVALRELGETREREEQETTSSKITELQLKLES-------ALTELEQ 592
Cdd:COG1196 713 EEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAlgpvnllAIEEYEE 792
|
...
gi 633226 593 LRK 595
Cdd:COG1196 793 LEE 795
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
26-612 |
1.94e-12 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 73.17 E-value: 1.94e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 26 EKFLADQQSEIDGLKGRHEKFKVESEqqyfEIEKRLSHSQERLVNETRECQSLRLELEKLNNQLKALTEKNKELEiaqdr 105
Cdd:PRK03918 164 YKNLGEVIKEIKRRIERLEKFIKRTE----NIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELE----- 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 106 niaiqsqftRTKEELEAEKRdlirtnerlsqELEYLTEDVKRLNEKLKESNTTKGELQLKLDELQasdvsvkyrekrlEQ 185
Cdd:PRK03918 235 ---------ELKEEIEELEK-----------ELESLEGSKRKLEEKIRELEERIEELKKEIEELE-------------EK 281
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 186 EKELlhsqntwlnTELKTKTDELLALGREKgNEILELKCNLEnkkEEVSRLEEQMNGLktsnEHLQKHVEDLLTKLKEAK 265
Cdd:PRK03918 282 VKEL---------KELKEKAEEYIKLSEFY-EEYLDELREIE---KRLSRLEEEINGI----EERIKELEEKEERLEELK 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 266 EQQASMEEKFhNELNAHIKLSNLYKSAADDSEAKSNELT-RAVEELHKLLKEAGEANKAIQDHLLEVEQSKDQMEKEmle 344
Cdd:PRK03918 345 KKLKELEKRL-EELEERHELYEEAKAKKEELERLKKRLTgLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKE--- 420
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 345 kigrlEKELENANDLLSATKRK----GAILSEEE-LAAMSPTAAAVAKIVKPGMKLTELYNAYVETQDQLLLEKLENKRI 419
Cdd:PRK03918 421 -----IKELKKAIEELKKAKGKcpvcGRELTEEHrKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESEL 495
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 420 NKYLD--EIVKEVEAK-----APILKRQREEYERAQKAVASLSVKLEQAMKEIQRLQEdtdkANKQSSVLERDNRRMEIQ 492
Cdd:PRK03918 496 IKLKElaEQLKELEEKlkkynLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEE----LKKKLAELEKKLDELEEE 571
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 493 VKDLSQQIRVL-----------LMELEEARGNHV-IRDEEVSSADISSSSEVISQHLV-SYRNIEELQQQNQRLLVALRE 559
Cdd:PRK03918 572 LAELLKELEELgfesveeleerLKELEPFYNEYLeLKDAEKELEREEKELKKLEEELDkAFEELAETEKRLEELRKELEE 651
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|...
gi 633226 560 LGETREREEQETTSSKITELQLKLESALTELEQLRKSRQHQMQLVDSIVRQRD 612
Cdd:PRK03918 652 LEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELE 704
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
973-1619 |
1.94e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.05 E-value: 1.94e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 973 EESLNKEKQVTEEVRKNIEvRLKESAE----FQtQLEKKLMEVEKEKQELQDDKRRA-IESMEQQLSELKKTLSSVQNEV 1047
Cdd:COG1196 185 EENLERLEDILGELERQLE-PLERQAEkaerYR-ELKEELKELEAELLLLKLRELEAeLEELEAELEELEAELEELEAEL 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1048 QE---ALQRASTALSNEQQARRDCQEQAKIAVEAQNKYERELMLHAADVEALQAAKEQvskMASVRQHLEETTQKAESQL 1124
Cdd:COG1196 263 AEleaELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEE---LEEELAELEEELEELEEEL 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1125 LECKASWEERERMLKDEVskcvcrcEDLEKQNRLLHDQIEKLSDKVVAsvkegvqgplnvsLSEEGKSQEQILEILRFIR 1204
Cdd:COG1196 340 EELEEELEEAEEELEEAE-------AELAEAEEALLEAEAELAEAEEE-------------LEELAEELLEALRAAAELA 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1205 REKEIAETRFEVAQVESLRYRQRVELLERELQELEDSLNAEREKVQVTAKTMAQHEELMKKTEtmnvvmETNKMLREEKE 1284
Cdd:COG1196 400 AQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALL------ELLAELLEEAA 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1285 RLEQDLQQMQAKVRKLELDILPLQEANAELSEKSGMLQAEKKLLEEDvKRWKARNQHLVSQQKDPDTEEYRKLLSEKEVH 1364
Cdd:COG1196 474 LLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLR-GLAGAVAVLIGVEAAYEAALEAALAAALQNIV 552
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1365 TKRIQQLTEEIGRLKAEIA-RSNASLTNNQNLIQSLKEDLNKVRTEKETIQKDLDAKIIDIQEKVKTITQVKKIG--RRY 1441
Cdd:COG1196 553 VEDDEVAAAAIEYLKAAKAgRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLvaARL 632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1442 KTQYEELKAQQDKVMETSAQSSGDHQEQHVSVQEMQELKETLNQAETKSKSLESQVENLQKTLSEKETEARNLQEQTVQL 1521
Cdd:COG1196 633 EAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEA 712
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1522 QSELSRLRQDLQDRTTQEEQLRQQITEKEEKTRKAIVAAKSKIAHLAGVKDQLTK---------------------ENEE 1580
Cdd:COG1196 713 EEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERelerlereiealgpvnllaieEYEE 792
|
650 660 670
....*....|....*....|....*....|....*....
gi 633226 1581 LKQRNGALDQQKDELDVRITALksqyEGRISRLERELRE 1619
Cdd:COG1196 793 LEERYDFLSEQREDLEEARETL----EEAIEEIDRETRE 827
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1279-1594 |
4.70e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 72.01 E-value: 4.70e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1279 LREEKERLEQDLQQMQAKVRKLELDILPLQEANAELSEKSgmLQAEKKLLEEDVKRWKARNQHLvSQQKDPDTEEYRKLL 1358
Cdd:TIGR02168 218 LKAELRELELALLVLRLEELREELEELQEELKEAEEELEE--LTAELQELEEKLEELRLEVSEL-EEEIEELQKELYALA 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1359 SEKEVHTKRIQQLTEEIGRLKAEIARSNASLTNNQNLIQSLKEDLNKVRTEKETIQKDLDAKIIDIQEKVKTITQVKKIG 1438
Cdd:TIGR02168 295 NEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1439 RRYKTQYEELKAQQDKVMETSAQSSGdhqeqhvsvqEMQELKETLNQAETKSKSLESQVENLQKTLSEKETEArnLQEQT 1518
Cdd:TIGR02168 375 EELEEQLETLRSKVAQLELQIASLNN----------EIERLEARLERLEDRRERLQQEIEELLKKLEEAELKE--LQAEL 442
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 633226 1519 VQLQSELSRLRQDLQDRTTQEEQLRQQITEKEEktrkAIVAAKSKIAHLAGVKDQLTKENEELKQRNGALDQQKDE 1594
Cdd:TIGR02168 443 EELEEELEELQEELERLEEALEELREELEEAEQ----ALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKN 514
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
979-1632 |
8.41e-12 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 71.33 E-value: 8.41e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 979 EKQVTEEVRKNIEVRLKESAEfQTQLEKKLMEVEKEKQELQDDKRRAIESMEQQLSELKKTLSSVQNEVQEALQRASTAL 1058
Cdd:PTZ00121 1186 EVRKAEELRKAEDARKAEAAR-KAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAH 1264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1059 SNEQQARRDCQEQAKI-----AVEAQNKYERELMLHAADVEALQAAKEQVSKMASVRQHLEETTQKAEsqllECKASWEE 1133
Cdd:PTZ00121 1265 FARRQAAIKAEEARKAdelkkAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKAD----AAKKKAEE 1340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1134 RERmlKDEVSKCvcrcEDLEKQNRLLHDQIEKLSDKVVASVKEGVQGPLNVSLSEEGKSQEQILEILRFIRREKEIAETR 1213
Cdd:PTZ00121 1341 AKK--AAEAAKA----EAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAA 1414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1214 FEVAQVESLRYR-QRVELLERELQELEDSLNAEREKVQVTAKTMAqhEELMKKTETMNVVMETNKMLREEKERLEQDLQQ 1292
Cdd:PTZ00121 1415 AAKKKADEAKKKaEEKKKADEAKKKAEEAKKADEAKKKAEEAKKA--EEAKKKAEEAKKADEAKKKAEEAKKADEAKKKA 1492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1293 MQAKVRKLELDILPLQEANAELSEKSGMLQAEKKLLEEDVKRwKARNQHLVSQQKDPD----TEEYRKLLSEKEVHTKRI 1368
Cdd:PTZ00121 1493 EEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAK-KADEAKKAEEKKKADelkkAEELKKAEEKKKAEEAKK 1571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1369 QQLTEEIGRLKAEIARSnaslTNNQNLIQSLKEDLNKVRTEKETIQKDLDAKIIdiQEKVKTITQVKKIGRRYKTQYEEL 1448
Cdd:PTZ00121 1572 AEEDKNMALRKAEEAKK----AEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIK--AEELKKAEEEKKKVEQLKKKEAEE 1645
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1449 KAQQDKVMETSAQSSGDHQEQHVSVQEMQELKETLNQAETKSKSLESQvenlqktLSEKETEARNLQEqtvqlqselsrL 1528
Cdd:PTZ00121 1646 KKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEA-------LKKEAEEAKKAEE-----------L 1707
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1529 RQDLQDRTTQEEQLRQqitEKEEKTRKAivaakskiahlagvkDQLTKENEELKQRNGALDQQKDELDvRITALKSQYEG 1608
Cdd:PTZ00121 1708 KKKEAEEKKKAEELKK---AEEENKIKA---------------EEAKKEAEEDKKKAEEAKKDEEEKK-KIAHLKKEEEK 1768
|
650 660
....*....|....*....|....
gi 633226 1609 RISRLERELREHQERHLEQRDEPQ 1632
Cdd:PTZ00121 1769 KAEEIRKEKEAVIEEELDEEDEKR 1792
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
872-1684 |
1.38e-11 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 70.53 E-value: 1.38e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 872 QLLDTKRQLDTETNLHLNTKELLKNAQKEIATLKQHLsNMEVQVASQSSQRTGKGQPSNKEDVDDLVSQLrqteEQVNDL 951
Cdd:pfam15921 86 QVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEM-QMERDAMADIRRRESQSQEDLRNQLQNTVHEL----EAAKCL 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 952 KE-RLKTSTSNVEQYQAMVTSLEESLNKEKQVTEEVRKNIEVRLKESAEFQT--------QLEKKLMEVEKEKQELQDdk 1022
Cdd:pfam15921 161 KEdMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTmhfrslgsAISKILRELDTEISYLKG-- 238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1023 rrAIESMEQQLSELKktlSSVQNEVQEALQ----RASTALSNEQQARRDCQEQAKIAVEAQNKYERELMLhaadveALQA 1098
Cdd:pfam15921 239 --RIFPVEDQLEALK---SESQNKIELLLQqhqdRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEI------IQEQ 307
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1099 AKEQVSKMASVRQHLEETTQKAESQLLECKASWEERERMLK-------DEVSKCVCRCEDLEKQNRLLHDQIEKLSDKVV 1171
Cdd:pfam15921 308 ARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEkqlvlanSELTEARTERDQFSQESGNLDDQLQKLLADLH 387
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1172 ASVKE-GVQGPLNVSLSEEGKSQEQILEILRfirreKEIAETRFEVAQVESL--RYRQRVELLERELQELEDSLNAEREK 1248
Cdd:pfam15921 388 KREKElSLEKEQNKRLWDRDTGNSITIDHLR-----RELDDRNMEVQRLEALlkAMKSECQGQMERQMAAIQGKNESLEK 462
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1249 VQ-VTAKTMAQHEELMKKTETMNvvmeTNKMLREEKERLEQDLQ-QMQAKVRKLEldilplqEANAELSEksgmLQAEKK 1326
Cdd:pfam15921 463 VSsLTAQLESTKEMLRKVVEELT----AKKMTLESSERTVSDLTaSLQEKERAIE-------ATNAEITK----LRSRVD 527
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1327 LLEEDVKRWKARNQHLVSQQKDPDTEEYRKLLSEKEVHTKRIQ-----QLTEEIGRLKAEIARSNASLTNNQNLIQSLKE 1401
Cdd:pfam15921 528 LKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQienmtQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQ 607
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1402 DLNKVRTEKETIQKDLDAKIIDIQ-EKVKTITqvkkigrrykTQYEELKAQQDKVMETSaqssgdhqeqhvsvQEMQELK 1480
Cdd:pfam15921 608 EFKILKDKKDAKIRELEARVSDLElEKVKLVN----------AGSERLRAVKDIKQERD--------------QLLNEVK 663
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1481 ETLNQAETKSKSLESQVENLQKTLSEKETEARNLQEQTVQLQSELSRLRQDLQDRTTQEEQ-------LRQQITEKeekt 1553
Cdd:pfam15921 664 TSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHamkvamgMQKQITAK---- 739
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1554 RKAIVAAKSKIAHLAGVKDQLTKENEELKQRNGALDQ-------QKDELDVRITALKSQ---YEGRISRLERELREHQER 1623
Cdd:pfam15921 740 RGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQelstvatEKNKMAGELEVLRSQerrLKEKVANMEVALDKASLQ 819
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 633226 1624 HLEQRDEPQEPSNKVPEQQRQITLKTTPASGErGIASTSDPPTANIKPTPVVSTPSKVTAA 1684
Cdd:pfam15921 820 FAECQDIIQRQEQESVRLKLQHTLDVKELQGP-GYTSNSSMKPRLLQPASFTRTHSNVPSS 879
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
767-1384 |
1.99e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 69.97 E-value: 1.99e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 767 LRGANEKLAVAEVRAENLKKEKEMLKLSEvrlsQQRESLLAEQRGQNLLLTNLQTIQGilersetETKQRLSSQIEKLEH 846
Cdd:COG1196 234 LRELEAELEELEAELEELEAELEELEAEL----AELEAELEELRLELEELELELEEAQ-------AEEYELLAELARLEQ 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 847 EISHLKKKLeneveqrhtltRNLDVQLLDTKRQLDTETNLHLNTKELLKNAQKEIATLKQHLSNMEVQVASQSSQRtgkg 926
Cdd:COG1196 303 DIARLEERR-----------RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEAL---- 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 927 qpsnkedvDDLVSQLRQTEEQVNDLKERLKTSTSNVEQYQAMVTSLEESLNKEKQvteevrknievRLKESAEFQTQLEK 1006
Cdd:COG1196 368 --------LEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLE-----------RLERLEEELEELEE 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1007 KLMEVEKEKQELQDDKRRAIESMEQQLSELKKTLSSVQNEVQEALQRAstalsNEQQARRDCQEQAKIAVEAQNKYEREL 1086
Cdd:COG1196 429 ALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLE-----AALAELLEELAEAAARLLLLLEAEADY 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1087 MLHAADVEALQAAKEQVSKMASVRQhLEETTQKAESQLLECKASWEERERMLKDEVSKcvcRCEDLEKQNRLLHDQIEKL 1166
Cdd:COG1196 504 EGFLEGVKAALLLAGLRGLAGAVAV-LIGVEAAYEAALEAALAAALQNIVVEDDEVAA---AAIEYLKAAKAGRATFLPL 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1167 SDKVVASVKEGVQGPLNVSLSEEGKSQEQILEILRFIRREKEIAETRFEVAQVESLRYRQRVELLERELQeledslnAER 1246
Cdd:COG1196 580 DKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREV-------TLE 652
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1247 EKVQVTAKTMAQHEELMKKTEtmnvvmetnkmLREEKERLEQDLQQMQAKVRKLELDILPLQEANAELSEKSGMLQAEKK 1326
Cdd:COG1196 653 GEGGSAGGSLTGGSRRELLAA-----------LLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEEL 721
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*...
gi 633226 1327 LLEEDVKRWKARNQHLVSQQKDPDTEEYRKLLSEKEVhTKRIQQLTEEIGRLKAEIAR 1384
Cdd:COG1196 722 EEEALEEQLEAEREELLEELLEEEELLEEEALEELPE-PPDLEELERELERLEREIEA 778
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
23-612 |
3.51e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.93 E-value: 3.51e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 23 NKLEKFLADQQSEIDglkgRHEKFKVESEQQYFEIEKRLSHSQERLVNETRECQSLRLELEKLNNQLKALTEKNKELEIA 102
Cdd:TIGR02168 242 EELQEELKEAEEELE----ELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQ 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 103 QDRNIAIQSQFTRTKEELEAEKRDLIRTNERLSQELEYLTEDVKRLNEKLKESNTTKGELQLKLDELQASDVSVKYREKR 182
Cdd:TIGR02168 318 LEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIAS 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 183 LEQEKELLHSQNTWLNTELKTKTDELLALGREKGN--------EILELKCNLENKKEEVSRLEEQMNGLKTSNEHLQKHV 254
Cdd:TIGR02168 398 LNNEIERLEARLERLEDRRERLQQEIEELLKKLEEaelkelqaELEELEEELEELQEELERLEEALEELREELEEAEQAL 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 255 EDLLTKLKEAKEQQASMEEKFHNELNAHIKLSNLYKSAADDSEAKS---------NELTRAVEE-----LHKLLKEAGEA 320
Cdd:TIGR02168 478 DAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGvlselisvdEGYEAAIEAalggrLQAVVVENLNA 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 321 NKAIQDHLLEVEQSK-----------DQMEKEMLEKIGRLEKELENANDLLSATKRK----GAILSEEELAAMSPTAAAV 385
Cdd:TIGR02168 558 AKKAIAFLKQNELGRvtflpldsikgTEIQGNDREILKNIEGFLGVAKDLVKFDPKLrkalSYLLGGVLVVDDLDNALEL 637
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 386 AKIVKPGMKLTEL-----------YNAYVETQDQLLLEKLENKRINKYLDEIVKEVEAKAPILKRQREEYERAQKAVASL 454
Cdd:TIGR02168 638 AKKLRPGYRIVTLdgdlvrpggviTGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQL 717
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 455 SVKLEQAMKEIQRLQEDTDKANKQSSVLERDNRRMEIQVKDLSQQIRVLLMELEEARGnHVIRDEEVSSADISSSSEVIS 534
Cdd:TIGR02168 718 RKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEE-ELAEAEAEIEELEAQIEQLKE 796
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 535 QHLVSYRNIEELQQQNQRLLVALRELGETREREEQETTSSK-----------------------ITELQLKLESALTELE 591
Cdd:TIGR02168 797 ELKALREALDELRAELTLLNEEAANLRERLESLERRIAATErrledleeqieelsedieslaaeIEELEELIEELESELE 876
|
650 660
....*....|....*....|.
gi 633226 592 QLRKSRQHQMQLVDSIVRQRD 612
Cdd:TIGR02168 877 ALLNERASLEEALALLRSELE 897
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
19-507 |
4.26e-11 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 68.51 E-value: 4.26e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 19 KSVQNKLEKFLADQQSEIDGLKGRHEKFK------VESEQQYFEIEKRLSHSQERLVNETRECQSLRLELEKLNNQLKal 92
Cdd:TIGR04523 172 ENELNLLEKEKLNIQKNIDKIKNKLLKLElllsnlKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEIS-- 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 93 tEKNKELEIAQDRNIAIQSQFTRTKEELEAEKRDLIRTNERLSQ---ELEYLTED-----VKRLNEKLKESNTTKGELQL 164
Cdd:TIGR04523 250 -NTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQlksEISDLNNQkeqdwNKELKSELKNQEKKLEEIQN 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 165 KLDELQASDVSVKYREKRLEQEKELLHSQNTWLNTELKTKTDELLALGREKG----------NEILELKCNLENKKEEVS 234
Cdd:TIGR04523 329 QISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQsykqeiknleSQINDLESKIQNQEKLNQ 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 235 RLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKFH------NELNAHIK--------LSNLYKSAADDSEAKS 300
Cdd:TIGR04523 409 QKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSvkeliiKNLDNTREsletqlkvLSRSINKIKQNLEQKQ 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 301 NELTRAVEELHKLLKEAGEANKAIQDHLLEVEQSK---DQMEKEMLEK---IGRLEKELENANDLLSATKRKGAILSEEE 374
Cdd:TIGR04523 489 KELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKekiEKLESEKKEKeskISDLEDELNKDDFELKKENLEKEIDEKNK 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 375 laamsptaaavaKIVKPGMKLTELYNAYVETQDQLLLEKLENKRINKYLDEIVKEVEAKAPILKRQREEYERAQKAVASL 454
Cdd:TIGR04523 569 ------------EIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNI 636
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|...
gi 633226 455 SVKLEQAMKEIQRLQEDTDKANKQSSVLERDNRRMEIQVKDLSQQIRVLLMEL 507
Cdd:TIGR04523 637 KSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKIDDIIELMKDWLKEL 689
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
158-1049 |
7.54e-11 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 68.07 E-value: 7.54e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 158 TKGELQLKLDELQASDVSVKYREKRLEQEKELLHSQNTWLNTELKTKTDELLALGREKGNEILELKCNLENKKEEVSRLE 237
Cdd:pfam02463 150 MKPERRLEIEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYL 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 238 EQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKFHNELNAHIKLSNLYKSAADDSEAKSNELTRAVEELHKLLKEA 317
Cdd:pfam02463 230 DYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRK 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 318 GEANKAIQDHLLEVEQSKDQMEKEMlEKIGRLEKELENANDLLSATKRKGAILSEEELAAMSPTAAAVAKIVkpgmKLTE 397
Cdd:pfam02463 310 VDDEEKLKESEKEKKKAEKELKKEK-EEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKK----LESE 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 398 LYNAYVETQDQLLLEKLENKRINKYLDEIVKEVEakapILKRQREEYERAQKAVASLSVKLEQAMKEIQRLQEDTDKANK 477
Cdd:pfam02463 385 RLSSAAKLKEEELELKSEEEKEAQLLLELARQLE----DLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKL 460
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 478 QSSVLERDNRRMEIQVKDLSQQIRVLLMELEEARGNHVIRDEEVSSADISSSSEVISQHLVSYRNIEELQQQNQRLLVAL 557
Cdd:pfam02463 461 LKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVEN 540
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 558 RELGETREREEQETTSSKITELQLKLESALTELEQLRKSRQHQMQLVDSIVRQrdmYRILLSQTTGVAIPLHASSLDDVS 637
Cdd:pfam02463 541 YKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKS---IAVLEIDPILNLAQLDKATLEADE 617
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 638 LASTPKRPSTSQTVSTpapvpviESTEAIEAKAALKQLQEIFENYKKEKAENEKIQNEQLEKLQEQVTDLRSQNTKISTQ 717
Cdd:pfam02463 618 DDKRAKVVEGILKDTE-------LTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELA 690
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 718 LDFASKRYEMLQDNVEGYRREITSLHERNQKLTATTQKQEQIINTMTQDLRGANEKLAVAEvraENLKKEKEMLKLSEVR 797
Cdd:pfam02463 691 KEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEE---EEKSRLKKEEKEEEKS 767
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 798 LSQQRESLLAEQRGQNLLLTNLQTIQGILERSETETKQRLSSQIEKLEHEISHLKKKLENEVEQRHTLTRNLDVQLLDTK 877
Cdd:pfam02463 768 ELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQK 847
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 878 RQLDTETNLHLNTKELLKNAQKEIATLKQHLSN-MEVQVASQSSQRTGKGQpsnKEDVDDLVSQLRQTEEQVNDLKERLK 956
Cdd:pfam02463 848 LEKLAEEELERLEEEITKEELLQELLLKEEELEeQKLKDELESKEEKEKEE---KKELEEESQKLNLLEEKENEIEERIK 924
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 957 TSTSNVEQYQAMVTSLEESLNKEKQVTEEVRKNIEVRLKESAEFQTQLEKKLMEVEKEKQELQdDKRRAIESMEQQLSEL 1036
Cdd:pfam02463 925 EEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKE-ERYNKDELEKERLEEE 1003
|
890
....*....|...
gi 633226 1037 KKTLSSVQNEVQE 1049
Cdd:pfam02463 1004 KKKLIRAIIEETC 1016
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1-742 |
8.72e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.77 E-value: 8.72e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1 MAAVLQQVLERTELNKLPKSVQNKLEKFLADQQSEIDGLKGRHEKFKV---ESEQQYFEIEKRLSHSQERLVNETRECQS 77
Cdd:TIGR02168 311 LANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAeleELEAELEELESRLEELEEQLETLRSKVAQ 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 78 LRLELEKLNNQLKALTEKNKELEIAQDRNIAIQSQftRTKEELEAEKRDLIRTNERLSQELEYLTEDVKRLNEKLKesnt 157
Cdd:TIGR02168 391 LELQIASLNNEIERLEARLERLEDRRERLQQEIEE--LLKKLEEAELKELQAELEELEEELEELQEELERLEEALE---- 464
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 158 tkgELQLKLDELQASDVSVKYREKRLEQEKELLHSqntwlntelktktdeLLALGREKGNEILELKCNLENKKEEVSRLE 237
Cdd:TIGR02168 465 ---ELREELEEAEQALDAAERELAQLQARLDSLER---------------LQENLEGFSEGVKALLKNQSGLSGILGVLS 526
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 238 EQMN---GLKTSNEH-LQKHVEDLLTK-LKEAKEQQASMEEkfhnelNAHIKLSNLYKSAADDSEAKSNELTRAVEE--- 309
Cdd:TIGR02168 527 ELISvdeGYEAAIEAaLGGRLQAVVVEnLNAAKKAIAFLKQ------NELGRVTFLPLDSIKGTEIQGNDREILKNIegf 600
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 310 ---LHKLLKEAGEANKAIQDHLLEVeqskdqmekemlekigRLEKELENANDLLSATKRKGAILSEEelaamsptaaavA 386
Cdd:TIGR02168 601 lgvAKDLVKFDPKLRKALSYLLGGV----------------LVVDDLDNALELAKKLRPGYRIVTLD------------G 652
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 387 KIVKPGMKLTelyNAYVETQDQLLLEKLENKRINKYLDEIVKEVEAKAPILKRQREEYERAQKAVASLSVKLEQAMKEIQ 466
Cdd:TIGR02168 653 DLVRPGGVIT---GGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQIS 729
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 467 RLQEDTDKANKQSSVLERDNRRMEIQVKDLSQQIRVLLMELEEARGnHVIRDEEVSSADISSSSEVISQHLVSYRNIEEL 546
Cdd:TIGR02168 730 ALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEE-ELAEAEAEIEELEAQIEQLKEELKALREALDEL 808
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 547 QQQNQRLLVALRELGETREREEQETTSSK--ITELQLKLESALTELEQLRKSRQHQMQLVDSIVRQRDmyrILLSQTTGV 624
Cdd:TIGR02168 809 RAELTLLNEEAANLRERLESLERRIAATErrLEDLEEQIEELSEDIESLAAEIEELEELIEELESELE---ALLNERASL 885
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 625 AIPLHASSLDDVSLASTPKRpstsqtvstpapvpviESTEAIEAKAALKQLQEIFENYKKEKAENEKIQNEQLEKLQEQV 704
Cdd:TIGR02168 886 EEALALLRSELEELSEELRE----------------LESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEY 949
|
730 740 750
....*....|....*....|....*....|....*...
gi 633226 705 tdlrsqntkiSTQLDFASKRYEMLQDNVEGYRREITSL 742
Cdd:TIGR02168 950 ----------SLTLEEAEALENKIEDDEEEARRRLKRL 977
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
973-1630 |
1.10e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.39 E-value: 1.10e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 973 EESLNKEKQVTEEVRKNIEvrlkeSAEFQTQLEKKLMEVEKEKQELQ-----------DDKRRAIESMEQQLSELKKTLS 1041
Cdd:TIGR02168 185 RENLDRLEDILNELERQLK-----SLERQAEKAERYKELKAELRELElallvlrleelREELEELQEELKEAEEELEELT 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1042 SVQNEVQEALQRASTALSNEQQARRDCQEQAKIAVEAQNKYERELMLHAADVEALQAAKEQVS-KMASVRQHLEETtQKA 1120
Cdd:TIGR02168 260 AELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEaQLEELESKLDEL-AEE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1121 ESQLLECKASWEERERMLKDEVSKCVCRCEDLEKQNRLLHDQIEKLSDKVVasvkegvqgplnvslseegksqeQILEIL 1200
Cdd:TIGR02168 339 LAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVA-----------------------QLELQI 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1201 RFIRREKEIAETRFEVAQVESLRYRQRvellerelqeledslNAEREKVQVTAKTMAQHEELMKKTETMNVVMETNKMLR 1280
Cdd:TIGR02168 396 ASLNNEIERLEARLERLEDRRERLQQE---------------IEELLKKLEEAELKELQAELEELEEELEELQEELERLE 460
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1281 EEKERLEQDLQQMQAKVRKLELDilpLQEANAELSEKSGMLQAEKKLLEEDVKRWKARNQH-----LVSQQKDPDtEEYR 1355
Cdd:TIGR02168 461 EALEELREELEEAEQALDAAERE---LAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLsgilgVLSELISVD-EGYE 536
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1356 K------------LLSEKEVHTKRIQQLTEEIGRLKAEI--------ARSNASLTNNQNLIQSLKEDLNKVRTEKETIQK 1415
Cdd:TIGR02168 537 AaieaalggrlqaVVVENLNAAKKAIAFLKQNELGRVTFlpldsikgTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRK 616
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1416 DLDAkIIDIQEKVKTITQVKKIGRRYKTQYEELKAQQDKVMETSAQSSGDHQEQHVSV---QEMQELKETLNQAETKSKS 1492
Cdd:TIGR02168 617 ALSY-LLGGVLVVDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILerrREIEELEEKIEELEEKIAE 695
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1493 LESQVENLQKTLSEKETEARNLQEQTVQLQSELSRLRQDLQDRTTQEEQLRQQIT----------EKEEKTRKAIVAAKS 1562
Cdd:TIGR02168 696 LEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAqlskelteleAEIEELEERLEEAEE 775
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1563 KIAHLAGVKDQLTKENEELKQRNGALDQQKDELDVRITALKSQYEGRISRLERELREH--QERHLEQRDE 1630
Cdd:TIGR02168 776 ELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIaaTERRLEDLEE 845
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
23-493 |
5.07e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 65.09 E-value: 5.07e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 23 NKLEKFLADQQSEIDGLKGRHEKFK------VESEQQYFEIEKRLSHSQERLVNETRECQSLRLELEKLNNQLKALtekn 96
Cdd:PRK03918 210 NEISSELPELREELEKLEKEVKELEelkeeiEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKEL---- 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 97 KELEIAQDRNIAIQsqftRTKEELEAEKRDLIRTNERLSQELEYLTEDVKRLNEKLKESNTTKGELQLKLDELQASDVSV 176
Cdd:PRK03918 286 KELKEKAEEYIKLS----EFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERH 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 177 KYRE--KRLEQEKELLHSQNTWLNTE-LKTKTDELLALGREKGNEILELKCNLENKKEEVSRLEEQMNGLKT-------- 245
Cdd:PRK03918 362 ELYEeaKAKKEELERLKKRLTGLTPEkLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKakgkcpvc 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 246 ----SNEHLQ----------KHVEDLLTKLKEAKEQQASMEEKFHNELNAHIKLSNLYKSAADDSEAKSN-------ELT 304
Cdd:PRK03918 442 grelTEEHRKelleeytaelKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKlkkynleELE 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 305 RAVEELHKLLKEAGEANKAIQDHLLEVEQSKDQMEK--EMLEKIGRLEKELENANDLLSATKRKGAILSEEELAAMSPTA 382
Cdd:PRK03918 522 KKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKlaELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFY 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 383 AAVAKIVKPGMKLTELYNAYVETQDQLLLEKLENKRINKYLDEIVKEVEAKAPIL-----KRQREEYERAQKAVASLSVK 457
Cdd:PRK03918 602 NEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYseeeyEELREEYLELSRELAGLRAE 681
|
490 500 510
....*....|....*....|....*....|....*.
gi 633226 458 LEQAMKEIQRLQEDTDKANKQssVLERDNRRMEIQV 493
Cdd:PRK03918 682 LEELEKRREEIKKTLEKLKEE--LEEREKAKKELEK 715
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1283-1623 |
6.74e-10 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 64.66 E-value: 6.74e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1283 KERLEQDLQQMQAKVRKLELDILPLQEANAELSEKSGMLQAEKKLLEEDVKRWKARNQHLVSQQKDPDTEEYRKLLsEKE 1362
Cdd:TIGR04523 199 LELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQK-ELE 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1363 VHTKRIQQLTEEIGRLKAEIarSNASLTNNQNLIQSLKEDLNKVRTEKETIQKDLDAKIIDIQEKVKTITQVKKIGRRYK 1442
Cdd:TIGR04523 278 QNNKKIKELEKQLNQLKSEI--SDLNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSE 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1443 TQYEELKAQQDKvmetsaqssgDHQEQHVSVQEMQELKETLNQAETKSKSLESQVENLQKTLSEKETEARNLQEQTVQLQ 1522
Cdd:TIGR04523 356 SENSEKQRELEE----------KQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLE 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1523 SELSRLRQDLQDRTTQEEQLRQQITEKEEKTRKAIVAAKSKIAHLAGVKDQLTKENEELKQRNGALDQQKDELDvRITAL 1602
Cdd:TIGR04523 426 KEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELK-KLNEE 504
|
330 340
....*....|....*....|.
gi 633226 1603 KSQYEGRISRLERELREHQER 1623
Cdd:TIGR04523 505 KKELEEKVKDLTKKISSLKEK 525
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
889-1629 |
1.25e-09 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 63.91 E-value: 1.25e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 889 NTKELLKNAQKEIATLKQHLSNMEVQVASQSSqRTGKGQPSNKEDVDDLVSQLRQTEEQVNDLKERLKTSTSNVEQYQAM 968
Cdd:TIGR00606 245 NELDPLKNRLKEIEHNLSKIMKLDNEIKALKS-RKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVD 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 969 VTSLEESLNKEKQVTEEVRKNIEVRLKESAEFQTQLEKKLMEVEKEKQELQD---------------DKRRAIESMEQQL 1033
Cdd:TIGR00606 324 CQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATrleldgfergpfserQIKNFHTLVIERQ 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1034 SELKKTLSSVQNEVQEALQRASTALSNEQQARRDCQEQAKIAVEAQNKYERELMLHAADVEALQAAKEQVSKM-ASVRQH 1112
Cdd:TIGR00606 404 EDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELdQELRKA 483
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1113 LEETTQKAESQLLECKASWEERERMLKDEVSKCVCR-CEDLEKQNRLLHDQIEKLS------DKVVASVKEGVQGPLN-V 1184
Cdd:TIGR00606 484 ERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKlDQEMEQLNHHTTTRTQMEMltkdkmDKDEQIRKIKSRHSDElT 563
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1185 SLSEEGKSQEQILEILRFIRREKEIAETRFEVAQVESLRYRQRVELLERELQELEDSLNAEREKVQVTAKTMAQHEELMK 1264
Cdd:TIGR00606 564 SLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLER 643
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1265 ktetmnvvmetnkmLREEKERLEQDLQQMQAKVRKLELDILPLQEANAELSEKSGMLQAEKKLLEEDVKRWKARNQHLVS 1344
Cdd:TIGR00606 644 --------------LKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPD 709
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1345 QQKDPDTEeYRKLLSEKEVHTKRIQQLTEEIGRLKAEIARSNASLTNNQNLIQSLKEDLNKVRTEKETIQKDLDAKIiDI 1424
Cdd:TIGR00606 710 KLKSTESE-LKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAK-VC 787
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1425 QEKVKTITQVkkigrryktqYEELKAQQDKVMETSAQSSGDHQEQHVsvqemQELKETLNQAETKSKSLESQVENLQKTL 1504
Cdd:TIGR00606 788 LTDVTIMERF----------QMELKDVERKIAQQAAKLQGSDLDRTV-----QQVNQEKQEKQHELDTVVSKIELNRKLI 852
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1505 SEKETEARNLQEQTVQLQSELSRLRQDLQDRTTQEEQLRQQITEKEEKTRkAIVAAKSKIAHLAGVKDQLTKENEELKQR 1584
Cdd:TIGR00606 853 QDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIR-EIKDAKEQDSPLETFLEKDQQEKEELISS 931
|
730 740 750 760
....*....|....*....|....*....|....*....|....*
gi 633226 1585 NGALDQQKDELDVRITALKSQYEGRISRLERELREHQERHLEQRD 1629
Cdd:TIGR00606 932 KETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKE 976
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
663-1142 |
1.49e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.80 E-value: 1.49e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 663 TEAIEAKAALKQLQEIFENYKKEKAEnekiQNEQLEKLQEQVTDLRSQNTKISTQLDFASKRYEMLQDNVEGYRREITSL 742
Cdd:COG1196 253 AELEELEAELAELEAELEELRLELEE----LELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAEL 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 743 HERNQKLTATTQKQEQIINTMTQDLRGANEKLAVAEVRAENLKKEKEMLKLSEVRLSQQRESLLAEQRGQNLLLTNL-QT 821
Cdd:COG1196 329 EEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELeEA 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 822 IQGILERSE--TETKQRLSSQIEKLEHEISHLKKKLEnEVEQRHTLTRNLDVQLLDTKRQLDTETNLHLNTKELLKNAQK 899
Cdd:COG1196 409 EEALLERLErlEEELEELEEALAELEEEEEEEEEALE-EAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELA 487
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 900 EIATLKQHLSNMEVQVASQSSQRTGKGQPSNKEDVDDLVSQLRQTEE----------------QVNDLKERLKTSTSNVE 963
Cdd:COG1196 488 EAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAayeaaleaalaaalqnIVVEDDEVAAAAIEYLK 567
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 964 QYQA----------MVTSLEESLNKEKQVTEEVRKNIEVRLKESAEFQTQLEkklmEVEKEKQELQDDKRRAIESMEQQL 1033
Cdd:COG1196 568 AAKAgratflpldkIRARAALAAALARGAIGAAVDLVASDLREADARYYVLG----DTLLGRTLVAARLEAALRRAVTLA 643
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1034 SELKKTLSSVQNEVQEALQRASTALSNEQQARRDCQEQAKIAVEAQNKYERELMLHAADVEALQAAKEQVSKMASVRQHL 1113
Cdd:COG1196 644 GRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEE 723
|
490 500
....*....|....*....|....*....
gi 633226 1114 EETTQKAESQLLECKASWEERERMLKDEV 1142
Cdd:COG1196 724 EALEEQLEAEREELLEELLEEEELLEEEA 752
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
879-1447 |
1.69e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 63.54 E-value: 1.69e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 879 QLDTETNLHLNTKELLKNAQKEIATLKQHLS---NMEVQVASQSSQRTGKgqpsnKEDVDDLVSQLRQTEEQVNDLKERL 955
Cdd:PRK03918 156 GLDDYENAYKNLGEVIKEIKRRIERLEKFIKrteNIEELIKEKEKELEEV-----LREINEISSELPELREELEKLEKEV 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 956 KTstsnVEQYQAMVTSLE---ESLNKEKQVTEEVRKNIEVRLKESAEFQTQLEKKLMEVE--KEKQELQDDKRRAIESME 1030
Cdd:PRK03918 231 KE----LEELKEEIEELEkelESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKelKEKAEEYIKLSEFYEEYL 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1031 QQLSELKKTLSSVQNEVQEALQRASTALSNEQQARRDCQEQAKIaveaqnkyERELMLHAADVEALQAAKEQVSKMASVR 1110
Cdd:PRK03918 307 DELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKEL--------EKRLEELEERHELYEEAKAKKEELERLK 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1111 QHLE-ETTQKAESQLLECkaswEERERMLKDEVSKCVCRCEDLEKQNRLLHDQIEKLSDkvvASVKEGVQGPLNVSLSEE 1189
Cdd:PRK03918 379 KRLTgLTPEKLEKELEEL----EKAKEEIEEEISKITARIGELKKEIKELKKAIEELKK---AKGKCPVCGRELTEEHRK 451
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1190 GKSQEQILEILRFIRREKEIAET----RFEVAQVESLRYRQRVELLERELQELEDSLNAEREKVQVtaktmaqhEELMKK 1265
Cdd:PRK03918 452 ELLEEYTAELKRIEKELKEIEEKerklRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNL--------EELEKK 523
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1266 TETMNVVMETNKMLREEKERLEQDLQQMQAKVRKLELDILPLQEANAELSEKSGMLQAE--------------------- 1324
Cdd:PRK03918 524 AEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELgfesveeleerlkelepfyne 603
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1325 -------KKLLEEDVKRWKARNQHLVS-----QQKDPDTEEYRKLLSEKEVH--TKRIQQLTEEIGRLKAEIARSNASLT 1390
Cdd:PRK03918 604 ylelkdaEKELEREEKELKKLEEELDKafeelAETEKRLEELRKELEELEKKysEEEYEELREEYLELSRELAGLRAELE 683
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*..
gi 633226 1391 NNQNLIQSLKEDLNKVRTEKETIQKdLDAKIIDIQEKVKTITQVKKIGRRYKTQYEE 1447
Cdd:PRK03918 684 ELEKRREEIKKTLEKLKEELEEREK-AKKELEKLEKALERVEELREKVKKYKALLKE 739
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1274-1645 |
1.88e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 63.12 E-value: 1.88e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1274 ETNKMLREEKERLEQDLQQMQAKVRKLELDILPLQEANAELSEKSGMLQAEKKLLEEDVKRWKARNQHLVSQQKDPDTEE 1353
Cdd:TIGR04523 243 EKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQEKK 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1354 YRKLLSEKEVHTKRIQQLTEEIGRLKAEIARSNaslTNNQNLIQSLKEDLNKVRTEKETIQ------KDLDAKIIDIQEK 1427
Cdd:TIGR04523 323 LEEIQNQISQNNKIISQLNEQISQLKKELTNSE---SENSEKQRELEEKQNEIEKLKKENQsykqeiKNLESQINDLESK 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1428 VKTITQVKKIG----RRYKTQYEELKAQQDKVMET--SAQSSGDHQEQHVSVQEM---------QELKETLNQAETKSKS 1492
Cdd:TIGR04523 400 IQNQEKLNQQKdeqiKKLQQEKELLEKEIERLKETiiKNNSEIKDLTNQDSVKELiiknldntrESLETQLKVLSRSINK 479
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1493 LESQVENLQKTLSEKETEARNLQEQTVQLQSELSRLRQDLQDRTTQEEQLRQQITEKEEKTRKAIVAAKS-----KIAHL 1567
Cdd:TIGR04523 480 IKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKddfelKKENL 559
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1568 AGVKDQLTKENEELKQRNGALDQQKDELDVRITALKSQ----------YEGRISRLERELREHQERH---LEQRDEPQEP 1634
Cdd:TIGR04523 560 EKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEkkdlikeieeKEKKISSLEKELEKAKKENeklSSIIKNIKSK 639
|
410
....*....|.
gi 633226 1635 SNKVPEQQRQI 1645
Cdd:TIGR04523 640 KNKLKQEVKQI 650
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
678-1584 |
2.01e-09 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 63.45 E-value: 2.01e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 678 IFENYKKEKAENEKIQNEQLEKLQEQVTDLRSQNTKISTQLDFA-SKRYEMLQDNVEGYRREITSLH------ERNQKLT 750
Cdd:pfam02463 164 GSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKkALEYYQLKEKLELEEEYLLYLDylklneERIDLLQ 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 751 ATTQKQEQIINTMTQDLRGANEKLavaEVRAENLKKEKEMLKLSEVRLSQQRESLLAEQRGQNLLLTNLQTIQGILERSE 830
Cdd:pfam02463 244 ELLRDEQEEIESSKQEIEKEEEKL---AQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 831 TEtKQRLSSQIEKLEHEISHLKKKLENEVEQRHTLTRNLDVQLldtKRQLDTETNLHLNTKELLKNAQKEIATLKQHLSN 910
Cdd:pfam02463 321 KE-KKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELE---KLQEKLEQLEEELLAKKKLESERLSSAAKLKEEE 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 911 MEVQvasqssqrtgkgqpSNKEDVDDLVSQLRQTEEqvNDLKERLKTSTSNVEQYQAMVTSLEESLNKEKQvteevrkni 990
Cdd:pfam02463 397 LELK--------------SEEEKEAQLLLELARQLE--DLLKEEKKEELEILEEEEESIELKQGKLTEEKE--------- 451
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 991 evrlkesaefqTQLEKKLMEVEKEKQELQDDKRRAIESMEQQLSELKKTLSSVQNEVQEALQRASTALSNEQQARRDCQE 1070
Cdd:pfam02463 452 -----------ELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGV 520
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1071 QAKIAVEAQNKYERELMLHAADVEALQAAKEQVSKMAsVRQHLEETTQKAESQLLECKASWEERERMLKDEVSKCVCRCE 1150
Cdd:pfam02463 521 GGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATA-DEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEI 599
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1151 DLEKQNRLLHDQIEKLSDKVVASVKEGVQGPLNVSLSEEGKSQEQILEILRFIRREKEIAETRFEVAQVESLRYRQRVEL 1230
Cdd:pfam02463 600 DPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQ 679
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1231 LERELQELEDSLNAEREKVQVTAKTMAQHEELMKKTETMNVVMETNKMLREEKERLEQDLQQMQAKVRKLELDILPLQEA 1310
Cdd:pfam02463 680 ELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKK 759
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1311 NAELSEKSGMLQAEKKLLEEDVKRWKARNQHLVSQQKDPDTEEYRKLLSEKEVHTKRIQQLTEEIGRLKAEIArsnaSLT 1390
Cdd:pfam02463 760 EEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKE----EEL 835
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1391 NNQNLIQSLKEDLNKVRTEKETIQKDLDAKIIDIQEKVKTITQVKKIGRRYKTQYEELKAQQDKVMETSAQSSGDHQEQH 1470
Cdd:pfam02463 836 EELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEK 915
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1471 VSV--QEMQELKETLNQAETKSKSLESQVENLQKTLSEKETEARNLQEQTVQlqselsrlrqdlqdrttqeeqlrqqitE 1548
Cdd:pfam02463 916 ENEieERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLL---------------------------A 968
|
890 900 910
....*....|....*....|....*....|....*.
gi 633226 1549 KEEKTRKAIVAAKSKIAHLAGVKDQLTKENEELKQR 1584
Cdd:pfam02463 969 KEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEK 1004
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1279-1451 |
2.35e-09 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 59.94 E-value: 2.35e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1279 LREEKERLEQDLQQMQAKVRKLELDilpLQEANAELSEksgmLQAEKKLLEEDVKRWKARNQHLVSQQKD-PDTEEYRKL 1357
Cdd:COG1579 22 LEHRLKELPAELAELEDELAALEAR---LEAAKTELED----LEKEIKRLELEIEEVEARIKKYEEQLGNvRNNKEYEAL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1358 LSEKEVHTKRIQQLTEEIGRLKAEIARSNASLTNNQNLIQSLKEDLNKVRTEKETIQKDLDAKIIDIQEKVKTItqVKKI 1437
Cdd:COG1579 95 QKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREEL--AAKI 172
|
170
....*....|....
gi 633226 1438 GRRYKTQYEELKAQ 1451
Cdd:COG1579 173 PPELLALYERIRKR 186
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
123-1053 |
2.48e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.16 E-value: 2.48e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 123 EKRDLIrtnERLSQELEYLTEDVKRLNEkLKESNTTKGELQLKLDElqasdvsVKYREKRLEQEKELLHSQNtwlntELK 202
Cdd:TIGR02169 154 ERRKII---DEIAGVAEFDRKKEKALEE-LEEVEENIERLDLIIDE-------KRQQLERLRREREKAERYQ-----ALL 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 203 TKTDELLalGREKGNEILELKCNLENKKEEVSRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKFHNELNAH 282
Cdd:TIGR02169 218 KEKREYE--GYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEK 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 283 I-KLSNLYKSAADDSEAKSNELTRAVEELHKLLKEageankaIQDHLLEVEQSKDQMEKEMLEKIgRLEKELENANDLLS 361
Cdd:TIGR02169 296 IgELEAEIASLERSIAEKERELEDAEERLAKLEAE-------IDKLLAEIEELEREIEEERKRRD-KLTEEYAELKEELE 367
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 362 ATKRKgailSEEELAAMSPTAAAVAKIVKPGMKLTELYNAYVETQDQLLLEKLEnkrinkyLDEIVKEVEAKAPILKRQR 441
Cdd:TIGR02169 368 DLRAE----LEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQR-------LSEELADLNAAIAGIEAKI 436
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 442 EEYERAQKAVASlsvKLEQAMKEIQRLQEDTDKANKQSSVLERDNRRMEIQVKDLSQQIrvllmeleeargnhvirdEEV 521
Cdd:TIGR02169 437 NELEEEKEDKAL---EIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQREL------------------AEA 495
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 522 SSADISSSSEVISqhlvSYRNIEELQQQNQRLLVALRELGETREREEQETTSSKITELQ-------LKLESALTELEQLR 594
Cdd:TIGR02169 496 EAQARASEERVRG----GRAVEEVLKASIQGVHGTVAQLGSVGERYATAIEVAAGNRLNnvvveddAVAKEAIELLKRRK 571
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 595 KSRQHQMQLVDSIVRQRDMYRILLSQTTGVAIPLhasslddvsLASTPK-RPSTSQTVSTPAPVPVIESTEAIEAKAALK 673
Cdd:TIGR02169 572 AGRATFLPLNKMRDERRDLSILSEDGVIGFAVDL---------VEFDPKyEPAFKYVFGDTLVVEDIEAARRLMGKYRMV 642
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 674 QLQ-EIFE---------NYKKEKAENEKIQNEQLEKLQEQVTDLRSQNTKISTQLDFASKRYEMLQDNVEGYRREITSLH 743
Cdd:TIGR02169 643 TLEgELFEksgamtggsRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIE 722
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 744 ERNQKLTATTQKQEQIINTMTQDLRGANEKLAVAEVRAENLKKEKEMLKLSEVRLSQQRESLLAEQRGQnllltNLQTIQ 823
Cdd:TIGR02169 723 KEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHS-----RIPEIQ 797
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 824 GILERSEtETKQRLSSQIEKLEHEIshlkKKLENEVEQRHTLTRNLDVQLLDTKRQLDTEtnlhlntKELLKNAQKEIAT 903
Cdd:TIGR02169 798 AELSKLE-EEVSRIEARLREIEQKL----NRLTLEKEYLEKEIQELQEQRIDLKEQIKSI-------EKEIENLNGKKEE 865
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 904 LKQHLSNMEVQVASQSSQRTGKgqpsnKEDVDDLVSQLRQTEEQVNDLKERLKTSTSNVEQYQAMVTSLEESLnkeKQVT 983
Cdd:TIGR02169 866 LEEELEELEAALRDLESRLGDL-----KKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEEL---SEIE 937
|
890 900 910 920 930 940 950
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 633226 984 EEVRKNIEVRLKESAEfqTQLEKKLMEVEKEKQELQDDKRRAI---ESMEQQLSELKKTLSSVQNEVQEALQR 1053
Cdd:TIGR02169 938 DPKGEDEEIPEEELSL--EDVQAELQRVEEEIRALEPVNMLAIqeyEEVLKRLDELKEKRAKLEEERKAILER 1008
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1187-1638 |
3.53e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 62.39 E-value: 3.53e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1187 SEEGKSQEQILEILRFIRREKEIAEtRFEVAQVESLRYRQRVELLERELQELEDSLNAEREKVQVTAKTMAQHEELMKKT 1266
Cdd:PRK03918 214 SELPELREELEKLEKEVKELEELKE-EIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKA 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1267 ETMNVVMETNKMLREEKERLEQDLQQMQAKVRKLELDILPLQEANAELSEKSGMLQAEKKLLE---------EDVKRWKA 1337
Cdd:PRK03918 293 EEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEeleerhelyEEAKAKKE 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1338 RNQHLVSQQKDPDTEEYRKLLSE----KEVHTKRIQQLTEEIGRLKAEIARSNASLT-------------------NNQN 1394
Cdd:PRK03918 373 ELERLKKRLTGLTPEKLEKELEElekaKEEIEEEISKITARIGELKKEIKELKKAIEelkkakgkcpvcgrelteeHRKE 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1395 LIQSLKEDLNKVRTEKETIqKDLDAKIIDIQEKVKTITQVKKIGRRYKTQYEELKAQQDKVmetsaqSSGDHQEQHVSVQ 1474
Cdd:PRK03918 453 LLEEYTAELKRIEKELKEI-EEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKL------KKYNLEELEKKAE 525
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1475 EMQELKETLNQAETKSKSLESQVENLQKTLSEKETEARNLQEqtvqLQSELSRLRQDLQDRT-TQEEQLRQQITEKEEKT 1553
Cdd:PRK03918 526 EYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDE----LEEELAELLKELEELGfESVEELEERLKELEPFY 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1554 RKAIvaakskiaHLAGVKDQLTKENEELKQRNGALDQQKDELDVRITALKSqYEGRISRLERELREhqERHLEQRDEPQE 1633
Cdd:PRK03918 602 NEYL--------ELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEE-LRKELEELEKKYSE--EEYEELREEYLE 670
|
....*
gi 633226 1634 PSNKV 1638
Cdd:PRK03918 671 LSREL 675
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
54-1122 |
5.50e-09 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 61.99 E-value: 5.50e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 54 YFEIEKRLSHSQERLVNETRECQSLRLELEKLNNQLKALTEK-----NKELEIaQDRNIAIQSQFTRTKEELE--AEKRD 126
Cdd:TIGR01612 539 YKEIEAGLKESYELAKNWKKLIHEIKKELEEENEDSIHLEKEikdlfDKYLEI-DDEIIYINKLKLELKEKIKniSDKNE 617
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 127 LIRTNERLSQELE----YLTEDVK----RLNEKLKESNTTKGELQLKLDELQASDVSVKYRE-KRLEQEKELLHSQNTWL 197
Cdd:TIGR01612 618 YIKKAIDLKKIIEnnnaYIDELAKispyQVPEHLKNKDKIYSTIKSELSKIYEDDIDALYNElSSIVKENAIDNTEDKAK 697
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 198 NTELKTKTDELLALGREKGNEILELK-CNLENKKEEVSRLEEQMNGLKTS--NEHLQKHVEDLLTKLKE--------AKE 266
Cdd:TIGR01612 698 LDDLKSKIDKEYDKIQNMETATVELHlSNIENKKNELLDIIVEIKKHIHGeiNKDLNKILEDFKNKEKElsnkindyAKE 777
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 267 QQ-----ASMEEKFHNELNAHIKLSNLYKSAADDSEAKSNELTRAV----EELHKLLKEAgeanKAIQDHLLEVEQSKDQ 337
Cdd:TIGR01612 778 KDelnkyKSKISEIKNHYNDQINIDNIKDEDAKQNYDKSKEYIKTIsikeDEIFKIINEM----KFMKDDFLNKVDKFIN 853
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 338 MEKEMLEKIgrlEKELENANDLLSATKRKgaiLSEEELA----AMSPTAAAVAKIVKPGMKLTELYNAYVETQDQL---- 409
Cdd:TIGR01612 854 FENNCKEKI---DSEHEQFAELTNKIKAE---ISDDKLNdyekKFNDSKSLINEINKSIEEEYQNINTLKKVDEYIkice 927
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 410 ----LLEKLENKR--INKYLDEIVKEVEAKAPILKRQREEYERA--------QKAVASLSV-----KLEQAMKEIQRLQE 470
Cdd:TIGR01612 928 ntkeSIEKFHNKQniLKEILNKNIDTIKESNLIEKSYKDKFDNTlidkinelDKAFKDASLndyeaKNNELIKYFNDLKA 1007
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 471 D--TDKAN---KQSSVLERDNRRMEIQVKDLSQQIRVLLMELEEARGNhvIRDE---EVSSADISSSSEVISQHLVSYRN 542
Cdd:TIGR01612 1008 NlgKNKENmlyHQFDEKEKATNDIEQKIEDANKNIPNIEIAIHTSIYN--IIDEiekEIGKNIELLNKEILEEAEINITN 1085
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 543 IEELQQQNQRL-LVALRELGETREREEQETTSSKITELQLKLESALTELEQLRKSRQHqmqLVDSIVRQrdmyrillsqt 621
Cdd:TIGR01612 1086 FNEIKEKLKHYnFDDFGKEENIKYADEINKIKDDIKNLDQKIDHHIKALEEIKKKSEN---YIDEIKAQ----------- 1151
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 622 tgvaiplhASSLDDVslastpkrpsTSQTVSTPAPVPVIESTEAIEAKAALKqlQEIFENYKKEKAENEKIQNEQ--LEK 699
Cdd:TIGR01612 1152 --------INDLEDV----------ADKAISNDDPEEIEKKIENIVTKIDKK--KNIYDEIKKLLNEIAEIEKDKtsLEE 1211
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 700 LQE-QVTDLRSQNTKISTQLDFASKRYEMLQDNVEGYRREITSLHERNQK------LTATTQKQEQIINTMTQDLR---- 768
Cdd:TIGR01612 1212 VKGiNLSYGKNLGKLFLEKIDEEKKKSEHMIKAMEAYIEDLDEIKEKSPEienemgIEMDIKAEMETFNISHDDDKdhhi 1291
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 769 -GANEKLAVAEVRAENLKKEK---EMLKLSEVRLSQQRESLLAEQRGQ--NLLLTNLQTIQGILERSETetkQRLSSQIE 842
Cdd:TIGR01612 1292 iSKKHDENISDIREKSLKIIEdfsEESDINDIKKELQKNLLDAQKHNSdiNLYLNEIANIYNILKLNKI---KKIIDEVK 1368
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 843 KLEHEISHLKKKLENEVEQRHTLTRNL--DVQLLDTKRQLD---------------TETNLHL-----NTKELLKNAQKE 900
Cdd:TIGR01612 1369 EYTKEIEENNKNIKDELDKSEKLIKKIkdDINLEECKSKIEstlddkdidecikkiKELKNHIlseesNIDTYFKNADEN 1448
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 901 IATLKQHLSNMEvqVASQSSQRTGKGQPSN-KEDVDDLVSQLRQTEEQVNDLKERLKTSTSNVE-------QYQAMVTSL 972
Cdd:TIGR01612 1449 NENVLLLFKNIE--MADNKSQHILKIKKDNaTNDHDFNINELKEHIDKSKGCKDEADKNAKAIEknkelfeQYKKDVTEL 1526
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 973 eesLNKEKQVT-----EEVRKNIEVRLKESAEFQTQL-------EKKLMEVEKEKQELQDDKRRAIESmeqqlselKKTL 1040
Cdd:TIGR01612 1527 ---LNKYSALAiknkfAKTKKDSEIIIKEIKDAHKKFileaeksEQKIKEIKKEKFRIEDDAAKNDKS--------NKAA 1595
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1041 SSVQNEVqEALQRASTALSNEQQARRDCQEQA-----KIAVEAQNKYERELMLHAADVEALQ----AAKEQVSKMASVRQ 1111
Cdd:TIGR01612 1596 IDIQLSL-ENFENKFLKISDIKKKINDCLKETesiekKISSFSIDSQDTELKENGDNLNSLQefleSLKDQKKNIEDKKK 1674
|
1210
....*....|.
gi 633226 1112 HLEETTQKAES 1122
Cdd:TIGR01612 1675 ELDELDSEIEK 1685
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
872-1556 |
1.20e-08 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 60.75 E-value: 1.20e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 872 QLLDTKRQLDTETNLHLNTKELLKNAQKEIATLKQHLSNMEVQVASQSSQRTGKGQPSNKE--DVDDLVSQLRQTEEQVN 949
Cdd:TIGR00618 167 ELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKElkHLREALQQTQQSHAYLT 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 950 DLKERLKTSTSNVEQYQAMVTSLEESLNKEKQVtEEVRKNIE-----VRLKESAEFQTQLEKKLMEVEKEKQELQDD--- 1021
Cdd:TIGR00618 247 QKREAQEEQLKKQQLLKQLRARIEELRAQEAVL-EETQERINrarkaAPLAAHIKAVTQIEQQAQRIHTELQSKMRSrak 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1022 ---KRRAIESMEQQLSELKKTLSSVQNEVQEALQRASTALSNEQQARRDCQEQAKIAVEAQNKYERELMLHAADVEALQA 1098
Cdd:TIGR00618 326 llmKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDIL 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1099 AKEQVSKMAsvrQHLEETTQKAESQLLECKASWEERERMLKDEVSKCVCRCEDLEK--QNRL---LHDQIEKLSDKVVAS 1173
Cdd:TIGR00618 406 QREQATIDT---RTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKihLQESaqsLKEREQQLQTKEQIH 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1174 VKEGVQGPLNVSLSEEGKSQEQILEILRFIRREKEIAETRFEVAQVESLRYRQRVELLERELQELEDSLNAEREKVQV-T 1252
Cdd:TIGR00618 483 LQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASlK 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1253 AKTMAQHEELMKKTETMNVVMETNKMLREEKERLeQDLQQMQAKVRKLELDILPLQEANAELS-EKSGMLQAEKKLLEED 1331
Cdd:TIGR00618 563 EQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRL-QDLTEKLSEAEDMLACEQHALLRKLQPEqDLQDVRLHLQQCSQEL 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1332 VKRWKARNQHLVSQQKDPDTEEYRKLLSEKEVHTKRIQQLTEEIGRLKAEIARSNASLTNNQNLIQSLKEDLNKVRTEKE 1411
Cdd:TIGR00618 642 ALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFN 721
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1412 TIQKDLDAKIIDIQEKVKTITQV-KKIGRRYKTQYEELK-AQQDKVMETSAQSSGDHQEQHVS----------VQEMQEL 1479
Cdd:TIGR00618 722 EIENASSSLGSDLAAREDALNQSlKELMHQARTVLKARTeAHFNNNEEVTAALQTGAELSHLAaeiqffnrlrEEDTHLL 801
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 633226 1480 KETLNQAETKSKSLESQVENLQKTLSEKETEARNLQEQTVQLQSELSRLRQDLQDRTTQEEQLRQQITEKEEKTRKA 1556
Cdd:TIGR00618 802 KTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDKL 878
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
423-1170 |
1.97e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 60.13 E-value: 1.97e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 423 LDEIVKEVEAKAPILKRQREEYERAQKAVASLSVKLEQAMKEIQRLQEDTDKANKQSsvlerdnRRMEIQVKDLSQQIRV 502
Cdd:pfam15921 119 LQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQIEQL-------RKMMLSHEGVLQEIRS 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 503 LLMELEEARGNHVIRDEEVSSADISSSSEVISQhlvsyrnieelqqqnqrllvALRELgetrereeqettSSKITELQLK 582
Cdd:pfam15921 192 ILVDFEEASGKKIYEHDSMSTMHFRSLGSAISK--------------------ILREL------------DTEISYLKGR 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 583 LESALTELEQLRKSRQHQMQLVdsIVRQRDMYRILLSQttgvaiplHASSLDDVSLASTPKRpstSQTVSTPAPVPVIES 662
Cdd:pfam15921 240 IFPVEDQLEALKSESQNKIELL--LQQHQDRIEQLISE--------HEVEITGLTEKASSAR---SQANSIQSQLEIIQE 306
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 663 TEAIEAKAALKQLQEI---FENYKKEKAENEKIQNEQLEKLQEQVTDLRSQNTKISTQLDFASKRYEMLQDNVEgyrREI 739
Cdd:pfam15921 307 QARNQNSMYMRQLSDLestVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQ---KLL 383
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 740 TSLHERNQKLTATTQKQEQIINTMTQDLRGANEKLAVAEVRAENLKKEKEMLKLSEVRLSQQRESLLAEQRGQNLLLTNL 819
Cdd:pfam15921 384 ADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKV 463
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 820 QTIQGILErsetETKQRLSSQIEKL----------EHEISHLKKKLENevEQRHTLTRNLDVQLLDTKRQLDTETNLHL- 888
Cdd:pfam15921 464 SSLTAQLE----STKEMLRKVVEELtakkmtlessERTVSDLTASLQE--KERAIEATNAEITKLRSRVDLKLQELQHLk 537
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 889 NTKELLKNAQKEIATLKQHLSNME--VQVASQSSQRTGKGQPSNKEDVDDLVSQLRQTEEQVNDLKERLKTSTSNVEQYQ 966
Cdd:pfam15921 538 NEGDHLRNVQTECEALKLQMAEKDkvIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKD 617
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 967 AMVTSLEESLNKEKQVTEEVRKNIEVRLKESAEFQTQLEKKLMEVEKEKQELQD----------DKRRAIESMEQQLSEL 1036
Cdd:pfam15921 618 AKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSlsedyevlkrNFRNKSEEMETTTNKL 697
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1037 KKTLSSVQNEVQEALQRASTALSNEQQArrdcqeqAKIAVEAQNKyerelmlhaadveaLQAAKEQVSKMASVRQHLEET 1116
Cdd:pfam15921 698 KMQLKSAQSELEQTRNTLKSMEGSDGHA-------MKVAMGMQKQ--------------ITAKRGQIDALQSKIQFLEEA 756
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....
gi 633226 1117 TQKAESQllecKASWEERERMLKDEVSKCVCRCEDLEKQNRLLHDQIEKLSDKV 1170
Cdd:pfam15921 757 MTNANKE----KHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKV 806
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1368-1646 |
2.26e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 59.70 E-value: 2.26e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1368 IQQLTEEIGRLKAEIARSNASLTNNQNLIQSLKEDLNKVRTEKETIQK--DLDAKIIDIQ------EKVKTITQVKKIGR 1439
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERyqALLKEKREYEgyellkEKEALERQKEAIER 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1440 RYKTQYEEL---KAQQDKVMETSAQSSGDHQEQHVSVQEMQElkETLNQAETKSKSLESQVENLQKTLSEKETEARNLQE 1516
Cdd:TIGR02169 245 QLASLEEELeklTEEISELEKRLEEIEQLLEELNKKIKDLGE--EEQLRVKEKIGELEAEIASLERSIAEKERELEDAEE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1517 QTVQLQSELSRLRQDLqdrttqeEQLRQQITEKeektrkaivaakskiahlAGVKDQLTKENEELKQRNGALDQQKDELD 1596
Cdd:TIGR02169 323 RLAKLEAEIDKLLAEI-------EELEREIEEE------------------RKRRDKLTEEYAELKEELEDLRAELEEVD 377
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 633226 1597 VRITALK---SQYEGRISRLERELREHQERHLEQRDEPQEPSNKVPEQQRQIT 1646
Cdd:TIGR02169 378 KEFAETRdelKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIA 430
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1359-1565 |
2.32e-08 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 58.69 E-value: 2.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1359 SEKEVHTKRIQQLTEEIGRLKAEIARSNASLTNNQNLIQSLKEDLNKVRTEKETIQKDLDAKIIDIQEkvktitQVKKIG 1438
Cdd:COG3883 16 PQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEE------RREELG 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1439 RRYKTQYEELKAQQDKVMETSAQSSGDHQEQHVSV--------QEMQELKETLNQAETKSKSLESQVENLQKTLSEKETE 1510
Cdd:COG3883 90 ERARALYRSGGSVSYLDVLLGSESFSDFLDRLSALskiadadaDLLEELKADKAELEAKKAELEAKLAELEALKAELEAA 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 633226 1511 ARNLQEQTVQLQSELSRLRQDLQDRTTQEEQLRQQITEKEEKTRKAIVAAKSKIA 1565
Cdd:COG3883 170 KAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAA 224
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
680-1436 |
2.49e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 59.65 E-value: 2.49e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 680 ENYKKEKAENEKIQNEQLEKLQEQVTDLRSQNTKISTQLDFASKRYEMLQDNVEGYRREITSLHERNQKLTATTQKQEQI 759
Cdd:TIGR04523 60 DKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKN 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 760 INTMTQDLRGANEKLAVAEVRAENLKKEKEMLKLSEVRLSQQRESLLAEQRGQNLLLTNLQTIQGILERSETETKQrLSS 839
Cdd:TIGR04523 140 IDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKS-LES 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 840 QIEKLEHEishlKKKLENEVEQRHTLTRNLDVQLLDTKRQLDTETNLHLNTKELLKNAQKEIATLKQHLSNMEVQVASQS 919
Cdd:TIGR04523 219 QISELKKQ----NNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLK 294
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 920 SQrtgkgqpsnkedvddlVSQLRQTEEQV--NDLKERLKTSTSNVEQYQAMVTSLEESLNKEKQVTEEVRKNIEVRLKES 997
Cdd:TIGR04523 295 SE----------------ISDLNNQKEQDwnKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESEN 358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 998 AEFQTQLEKKLMEVEKEKQElQDDKRRAIESMEQQLSELKKTLSSVQNEVQEALQRASTALSNEQQARRDcQEQAKIAVE 1077
Cdd:TIGR04523 359 SEKQRELEEKQNEIEKLKKE-NQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKE-IERLKETII 436
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1078 AQNKYERELmlhaadVEALQAAKEQVSKMASVRQHLEETTQKAESQLLECKASWEERERMLKDEVSKCvcrcEDLEKQNR 1157
Cdd:TIGR04523 437 KNNSEIKDL------TNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKEL----KKLNEEKK 506
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1158 LLHDQIEKLSDKVvasvkegvqgplnvslsEEGKSQEQILEilrfirreKEIAETRFEVAQVESlryrqrvellerelqe 1237
Cdd:TIGR04523 507 ELEEKVKDLTKKI-----------------SSLKEKIEKLE--------SEKKEKESKISDLED---------------- 545
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1238 ledslnaerekvqvtaktmaqheELMKKTETMNvvmetnkmlreeKERLEQDLQQMQAKVRKLELDILPLQEANAELSEK 1317
Cdd:TIGR04523 546 -----------------------ELNKDDFELK------------KENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQEL 590
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1318 SGMLQAEKKlleedvkrwkarnqhlvsqqkdpdteeyrKLLSEKEVHTKRIQQLTEEIGRLKAEIARSNASLTNNQNLIQ 1397
Cdd:TIGR04523 591 IDQKEKEKK-----------------------------DLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKN 641
|
730 740 750 760
....*....|....*....|....*....|....*....|..
gi 633226 1398 SLKEDLNKVRTE-KETIQK--DLDAKIIDIQEKVKTITQVKK 1436
Cdd:TIGR04523 642 KLKQEVKQIKETiKEIRNKwpEIIKKIKESKTKIDDIIELMK 683
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
53-354 |
3.30e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 59.31 E-value: 3.30e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 53 QYFEIEKRLSHSQERLVNETRECQSLRLELEKLNNQLK-ALTEKNKELEIAQDRNIAIQSQFTRTKEELEAEKRDLirtn 131
Cdd:TIGR02169 671 SEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSqELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDL---- 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 132 ERLSQELEYLTEDVKRLNEKLKESNTTKGELQLKLDELQASDVSVKYREKRLEQEK-ELLHSQNTWLNTELKTKTDELLA 210
Cdd:TIGR02169 747 SSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKlEEEVSRIEARLREIEQKLNRLTL 826
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 211 LgrekgNEILELKcnLENKKEEVSRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKfHNELNAHIKLSNLYK 290
Cdd:TIGR02169 827 E-----KEYLEKE--IQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESR-LGDLKKERDELEAQL 898
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 633226 291 SAAddsEAKSNELTRAVEELHKLLKEAGEANKAIQDHLLEVEQSKDQMEKEMLEK--IGRLEKELE 354
Cdd:TIGR02169 899 REL---ERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEElsLEDVQAELQ 961
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1344-1563 |
3.88e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 57.85 E-value: 3.88e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1344 SQQKDPDTEEYRKLLSEKEVHTKRIQQLTEEIGRLKAEIARSNASLTNNQNLIQSLKEDLNKVRTEKETIQKDLDAKIID 1423
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1424 IQEKVKTI-TQVKKIGRRYKTQYEELKAQQDKVMETSAQSSGDHQEQHVSVQEMQELKETLNQAETKSKSLESQVENLQK 1502
Cdd:COG4942 99 LEAQKEELaELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEA 178
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 633226 1503 TLSEKETEARNLQEQTVQ-------LQSELSRLRQDLQDRTTQEEQLRQQITEKEEKTRKAIVAAKSK 1563
Cdd:COG4942 179 LLAELEEERAALEALKAErqkllarLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1411-1661 |
4.41e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.91 E-value: 4.41e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1411 ETIQKDLDaKIIDIQEKVKTitQVKKIGRRYKtQYEELKAQQDKVMETSAQSSGDHQEQHVsvQEMQELKETLNQAETKS 1490
Cdd:TIGR02168 182 ERTRENLD-RLEDILNELER--QLKSLERQAE-KAERYKELKAELRELELALLVLRLEELR--EELEELQEELKEAEEEL 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1491 KSLESQVENLQKTLSEKETEARNLQEQTVQLQSELSRLRQDLQDRTTQEEQLRQQITE-----------------KEEKT 1553
Cdd:TIGR02168 256 EELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANlerqleeleaqleelesKLDEL 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1554 RKAIVAAKSKIAHLAGVKDQLTKENEELKQRNGALDQQKDELDVRITALKSQY----------EGRISRLERELrEHQER 1623
Cdd:TIGR02168 336 AEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVaqlelqiaslNNEIERLEARL-ERLED 414
|
250 260 270
....*....|....*....|....*....|....*...
gi 633226 1624 HLEQRDEPQEPSNKVPEQQRQITLKTTPASGERGIAST 1661
Cdd:TIGR02168 415 RRERLQQEIEELLKKLEEAELKELQAELEELEEELEEL 452
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
575-1513 |
4.47e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.93 E-value: 4.47e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 575 KITELQLKLESALTELEQLRKSRQHQMQlvdsivrqrdmYRILLSQTTGVAIPLHASSLddvslastpkrpstsqtvstp 654
Cdd:TIGR02169 185 NIERLDLIIDEKRQQLERLRREREKAER-----------YQALLKEKREYEGYELLKEK--------------------- 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 655 apvpviesteaieaKAALKQLQEIfenyKKEKAENEkiqnEQLEKLQEQVTDLRSQNTKISTQLDFASKRYEMLQDNveg 734
Cdd:TIGR02169 233 --------------EALERQKEAI----ERQLASLE----EELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEE--- 287
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 735 yrrEITSLHERNQKLTATTQKQEQIINTMTQDLRGANEKLAVAEVRAENLKKEKEMLKLSEVRLSQQRESLLAE----QR 810
Cdd:TIGR02169 288 ---EQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEyaelKE 364
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 811 GQNLLLTNLQTIQGILERSETETKQRlSSQIEKLEHEISHLKKKLENEVEqrhtLTRNLDVQLLDTKRQLDTETNLHLNT 890
Cdd:TIGR02169 365 ELEDLRAELEEVDKEFAETRDELKDY-REKLEKLKREINELKRELDRLQE----ELQRLSEELADLNAAIAGIEAKINEL 439
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 891 KELLKNAQKEIATLKQHLSnmevqvasqssqrtgkgqpSNKEDVDDLVSQLRQTEEQVNDLKERLKTSTSNVEQYQAMVT 970
Cdd:TIGR02169 440 EEEKEDKALEIKKQEWKLE-------------------QLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQAR 500
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 971 SLEESLNKEKQVTEEVRKNIE---------VRLKEsaEFQTQLEK------KLMEVEKEkqelqDDKRRAIESMEqqlse 1035
Cdd:TIGR02169 501 ASEERVRGGRAVEEVLKASIQgvhgtvaqlGSVGE--RYATAIEVaagnrlNNVVVEDD-----AVAKEAIELLK----- 568
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1036 lkktlssvqnevQEALQRAS-TALSNEQQARRD--------CQEQAKIAVEAQNKYERELMLHAAD---VEALQAAKEQV 1103
Cdd:TIGR02169 569 ------------RRKAGRATfLPLNKMRDERRDlsilsedgVIGFAVDLVEFDPKYEPAFKYVFGDtlvVEDIEAARRLM 636
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1104 SK--MASVRQHLEETT------QKAESQLLECKASWEERERMLKDEVskcvcrcEDLEKQ-NRLLHDQ--IEKLSDKVVA 1172
Cdd:TIGR02169 637 GKyrMVTLEGELFEKSgamtggSRAPRGGILFSRSEPAELQRLRERL-------EGLKRElSSLQSELrrIENRLDELSQ 709
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1173 SVKEGVQgplnvSLSEEGKSQEQILEILRFIRREKEIAETRFEVAQVESLRYRQRVELLERELQELEDSLNAEREKVQvT 1252
Cdd:TIGR02169 710 ELSDASR-----KIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALN-D 783
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1253 AKTMAQHEELMKKTETMNVVMETNKMLREEKERLEQDLQQMQAKVRKLELDILPLQEANAELSEKSGMLQAEKKLLEEDV 1332
Cdd:TIGR02169 784 LEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKK 863
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1333 krwkarnqhlvsqqkdpdteeyRKLLSEKEVHTKRIQQLTEEIGRLKAEIARSNASLTNNQNLIQSLKEDLNKvrteKET 1412
Cdd:TIGR02169 864 ----------------------EELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEK----KRK 917
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1413 IQKDLDAKIIDIQEKVKTITQVKKIGRRYKTQ---YEELKAQQDKvMETSAQSSGDhqEQHVSVQEMQELKETLNQAETK 1489
Cdd:TIGR02169 918 RLSELKAKLEALEEELSEIEDPKGEDEEIPEEelsLEDVQAELQR-VEEEIRALEP--VNMLAIQEYEEVLKRLDELKEK 994
|
970 980
....*....|....*....|....
gi 633226 1490 SKSLESQVENLQKTLSEKETEARN 1513
Cdd:TIGR02169 995 RAKLEEERKAILERIEEYEKKKRE 1018
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
543-1119 |
6.01e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.41 E-value: 6.01e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 543 IEELQQQNQRLLVALREL--GETREREEQETTSSKITELQLKLESALTELEQLRKSRQHQMQLVDSIVRQRDMYRILLSQ 620
Cdd:COG1196 248 LEELEAELEELEAELAELeaELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAE 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 621 TTGVAIplhasslddvslastpkrpstsqtvstpapvpvIESTEAIEAKAALKQLQEIFENYKKEKAENEKIQNEQLEKL 700
Cdd:COG1196 328 LEEELE---------------------------------ELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAEL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 701 QEQVTDLRSQNtkiSTQLDFASKRYEMLQDNVEGYRREITSLHERNQKLTATTQKQEQIINTMTQDLRganEKLAVAEVR 780
Cdd:COG1196 375 AEAEEELEELA---EELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEE---EEEALEEAA 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 781 AENLKKEKEMLKLSEVRLSQQRESLLAEQRGQNLLLTNLQtiqgilERSETETKQRLSSQIEKLEHEISHLKKKLENEVE 860
Cdd:COG1196 449 EEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAE------AAARLLLLLEAEADYEGFLEGVKAALLLAGLRGL 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 861 QRHTLTRNLDVQLLDTKRQLDTETNLHLNTKELLKNAQKEIATLKQHLSNMEVQVASQSSQRTGKGQPSNKEDVDDLVSQ 940
Cdd:COG1196 523 AGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVD 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 941 LRQTEEQVNDLKERLktstsnVEQYQAMVTSLEESLNKEKQVTEEVRKNIEVRLKESAEFQTQLEKKLMEVEKEKQELQD 1020
Cdd:COG1196 603 LVASDLREADARYYV------LGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLE 676
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1021 DKRRAIESMEQQLSELKKTLSSVQNEVQEALQRASTALSNEQQARRDCQEQAKIAVEAQNKYERELMLHAADVEALQAAK 1100
Cdd:COG1196 677 AEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEEL 756
|
570
....*....|....*....
gi 633226 1101 EQVSKMASVRQHLEETTQK 1119
Cdd:COG1196 757 PEPPDLEELERELERLERE 775
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
992-1628 |
6.64e-08 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 58.44 E-value: 6.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 992 VRLKESAEFQTQLEKKLMEVEKEKQELQDDKRRAIESMEQQLSELKKTLSSVQNEVQEALQRASTAlsneQQARRDCQE- 1070
Cdd:TIGR00618 197 ELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLL----KQLRARIEEl 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1071 QAKIAVEAQNKYERELMLHAADVEALQAAKEQVskmasvRQHLEETTQKAESQLLECKASWEERERMLKDEVSKCVCRce 1150
Cdd:TIGR00618 273 RAQEAVLEETQERINRARKAAPLAAHIKAVTQI------EQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQR-- 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1151 DLEKQNRLLHDQIEKLSDKVVASVKEGVQgplNVSLSEEGKSQEQILEILRFIRR--EKEIAETRFEVAQVESLRYRQRV 1228
Cdd:TIGR00618 345 RLLQTLHSQEIHIRDAHEVATSIREISCQ---QHTLTQHIHTLQQQKTTLTQKLQslCKELDILQREQATIDTRTSAFRD 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1229 ELLERELQELEDSLNAEREKVQVTAKTMAQHEELMKKTEtmnvVMETNKMLREEKERLE--QDLQQMQAKVRKLELDILP 1306
Cdd:TIGR00618 422 LQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIH----LQESAQSLKEREQQLQtkEQIHLQETRKKAVVLARLL 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1307 LQEANAELSEKSgmlqaekkLLEEDVKRWKARNQHLVSQQKDPDTEEYRKLLSEKEVHTKRIQQLTEEIGRLKAEIARSN 1386
Cdd:TIGR00618 498 ELQEEPCPLCGS--------CIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQ 569
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1387 ASLTNNQNLIQSLKEDLNKVRTEKETIQKDLDAKI---------IDIQEKVKTITQVKKIGRRYKTQYEELKAQQDKVME 1457
Cdd:TIGR00618 570 QSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSeaedmlaceQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALH 649
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1458 TSAQSSGDHQEQHVSVQEMQELKETLNQAETKSKSLESQVENL----------QKTLSEKETEARNLQEQTVQLQSELSR 1527
Cdd:TIGR00618 650 ALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLtywkemlaqcQTLLRELETHIEEYDREFNEIENASSS 729
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1528 LRQDLQDRTTQEEQLRQQITEKEEKTRKAIVAAKSKIAHLAGVKDQLTKENEELKQRNGALDQQKDELDVRITALKSQYE 1607
Cdd:TIGR00618 730 LGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIG 809
|
650 660
....*....|....*....|.
gi 633226 1608 GRISRLERELREHQERHLEQR 1628
Cdd:TIGR00618 810 QEIPSDEDILNLQCETLVQEE 830
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
994-1633 |
7.09e-08 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 58.43 E-value: 7.09e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 994 LKESAEFQTQLEKKLMEVEKEKQELQDDKRRAIE------SMEQQLSELKKTLSSVQNEV--QEALQRASTALsNEQQAR 1065
Cdd:PRK04863 285 LEEALELRRELYTSRRQLAAEQYRLVEMARELAElneaesDLEQDYQAASDHLNLVQTALrqQEKIERYQADL-EELEER 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1066 rdcQEQAKIAVEAQNkyERELMLHAADVEALQAAKEQVSKMASVRQHLEETtQKAESQLLECKASWEErermlkdevSKC 1145
Cdd:PRK04863 364 ---LEEQNEVVEEAD--EQQEENEARAEAAEEEVDELKSQLADYQQALDVQ-QTRAIQYQQAVQALER---------AKQ 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1146 VCRCEDLEKQNrlLHDQIEKLSDKVVASVKEGVQGPLNVSLSEEGKSQ-EQILEILR--------------FIRREKEIA 1210
Cdd:PRK04863 429 LCGLPDLTADN--AEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQfEQAYQLVRkiagevsrseawdvARELLRRLR 506
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1211 ETRFEVAQVESLRYRQRVELLERELQELEDSLNAEREKV---QVTAKTMAQ--HEELMKKTETMNVVMETnkmLREEKER 1285
Cdd:PRK04863 507 EQRHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRlgkNLDDEDELEqlQEELEARLESLSESVSE---ARERRMA 583
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1286 LEQDLQQMQAKVRKLE---LDILPLQEANAELSEKSG--------MLQAEKKLLEEDVKRWKARNQhlVSQQKDPDTEEY 1354
Cdd:PRK04863 584 LRQQLEQLQARIQRLAaraPAWLAAQDALARLREQSGeefedsqdVTEYMQQLLERERELTVERDE--LAARKQALDEEI 661
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1355 RKLLSEKEVHTKRIQQLTEEI-GRLKAEI------------------ARsNASLTNNQNLIQS-------LKEDLNKV-- 1406
Cdd:PRK04863 662 ERLSQPGGSEDPRLNALAERFgGVLLSEIyddvsledapyfsalygpAR-HAIVVPDLSDAAEqlagledCPEDLYLIeg 740
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1407 --------RTEKETIQKDLDAKIIDIQEKVKTITQVKKIGRRYKTQY-EELKAQQDKVMETSAQSSGDhqeqhvsVQEMQ 1477
Cdd:PRK04863 741 dpdsfddsVFSVEELEKAVVVKIADRQWRYSRFPEVPLFGRAAREKRiEQLRAEREELAERYATLSFD-------VQKLQ 813
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1478 ELKETLNQAETKSKSL------ESQVENLQKTLSEKETEARNLQEQTVQLQSELSRLRQDLQ-------------DRTTQ 1538
Cdd:PRK04863 814 RLHQAFSRFIGSHLAVafeadpEAELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSalnrllprlnllaDETLA 893
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1539 E--EQLRQQITEKEEKTR--KAIVAAKSKIAHLAGVKDQLTKENEELKQRNGALDQQKDELDVRITALKS--------QY 1606
Cdd:PRK04863 894 DrvEEIREQLDEAEEAKRfvQQHGNALAQLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQAFALTEvvqrrahfSY 973
|
730 740 750
....*....|....*....|....*....|...
gi 633226 1607 EGRISRLERE------LREHQERHLEQRDEPQE 1633
Cdd:PRK04863 974 EDAAEMLAKNsdlnekLRQRLEQAEQERTRARE 1006
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
117-612 |
7.42e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 58.23 E-value: 7.42e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 117 KEELEAEKRDLIRTNERLSQELEYLTEDVKRLN------EKLKESNTTKGELQLKLDELQASDVSVKYREKRLEQEKELL 190
Cdd:PTZ00121 1237 KDAEEAKKAEEERNNEEIRKFEEARMAHFARRQaaikaeEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKK 1316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 191 HSQNTWLNTELKTKTDELLALGREKGNEILELKCNLENKKEEVSRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQAS 270
Cdd:PTZ00121 1317 ADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEA 1396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 271 MEEKFHNELNA-HIKLSNLYKSAADDSEAKSNELTRAvEELHKLLKE---AGEANKAIQDHLLEVEQSKDQMEKEMLEKI 346
Cdd:PTZ00121 1397 KKKAEEDKKKAdELKKAAAAKKKADEAKKKAEEKKKA-DEAKKKAEEakkADEAKKKAEEAKKAEEAKKKAEEAKKADEA 1475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 347 GRLEKELENANDLLSATKRKGAILSEEELAAMSPTAAAVAKIVKPGMKLTELYNAYvETQDQLLLEKLENKRinkYLDEI 426
Cdd:PTZ00121 1476 KKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAE-EAKKADEAKKAEEKK---KADEL 1551
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 427 VKEVEAKAPILKRQREEYERAQKAVASLSVKLEQAMKEIQRLQEDTDKANKQSSVLERDNRRMEIQVKDLSQQIRVLLME 506
Cdd:PTZ00121 1552 KKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEE 1631
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 507 LEEARGNHVIRDEEVSSADISSSSEviSQHLVSYRNIEELQQQNQRLLVALR-----ELGETREREEQETTSSKITELQL 581
Cdd:PTZ00121 1632 KKKVEQLKKKEAEEKKKAEELKKAE--EENKIKAAEEAKKAEEDKKKAEEAKkaeedEKKAAEALKKEAEEAKKAEELKK 1709
|
490 500 510
....*....|....*....|....*....|.
gi 633226 582 KLESALTELEQLRKSRQHQMQLVDSIVRQRD 612
Cdd:PTZ00121 1710 KEAEEKKKAEELKKAEEENKIKAEEAKKEAE 1740
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1421-1620 |
1.19e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 57.62 E-value: 1.19e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1421 IIDIQEKVKTITQVKKIGRRYKTQYEELKAQQDkvMETSAQSSGDHQEQHVSVQEMQELKETLNQAETKSKSLESQVENL 1500
Cdd:COG4913 244 LEDAREQIELLEPIRELAERYAAARERLAELEY--LRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDAL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1501 QKTLSEKETEARN--------LQEQTVQLQSELSRLRqdlQDRTTQEEQLRqQITEKEEKTRKAIVAAKSKIAHLAGVKD 1572
Cdd:COG4913 322 REELDELEAQIRGnggdrleqLEREIERLERELEERE---RRRARLEALLA-ALGLPLPASAEEFAALRAEAAALLEALE 397
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 633226 1573 QLTKENE----ELKQRNGALDQQKDELDVRITAL---KSQYEGRISRLERELREH 1620
Cdd:COG4913 398 EELEALEealaEAEAALRDLRRELRELEAEIASLerrKSNIPARLLALRDALAEA 452
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1052-1619 |
1.28e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 57.36 E-value: 1.28e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1052 QRASTALSNEQQARRDCQEQ-AKIAVEAQNKYERELmlhaadVEALQAAKEQVSKMASVRQHLEETTQKAESQLLECKAS 1130
Cdd:PRK02224 169 ERASDARLGVERVLSDQRGSlDQLKAQIEEKEEKDL------HERLNGLESELAELDEEIERYEEQREQARETRDEADEV 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1131 WEERERmlkdevskcvcRCEDLEKqnrlLHDQIEKLSDKVVASVKEgvqgplNVSLSEEGKSQEQILEILRfIRREKEIA 1210
Cdd:PRK02224 243 LEEHEE-----------RREELET----LEAEIEDLRETIAETERE------REELAEEVRDLRERLEELE-EERDDLLA 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1211 ETRFEVAQVESLRyrQRVELLERELQELEDSLNAEREKVQVTAKTMAQHEELMKKTEtmnvvmETNKMLREEKERLEQDL 1290
Cdd:PRK02224 301 EAGLDDADAEAVE--ARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLE------ERAEELREEAAELESEL 372
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1291 QQMQAKVRKLELDILPLQEANAELSEK-------SGMLQAEKKLLEEDVKRWKARNQHLVS--QQKDPDTEEYRKLLSEK 1361
Cdd:PRK02224 373 EEAREAVEDRREEIEELEEEIEELRERfgdapvdLGNAEDFLEELREERDELREREAELEAtlRTARERVEEAEALLEAG 452
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1362 EVHT------------------KRIQQLTEEIGRLKAEIARSNASLTNNQNLIQSLKEdLNKVRTEKETIQKDLDAKIID 1423
Cdd:PRK02224 453 KCPEcgqpvegsphvetieedrERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDR-IERLEERREDLEELIAERRET 531
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1424 IQEKVKTITQVKKIGRRYKTQYEELKAQQDKVMETSAQSSgdhQEQHVSVQEMQELKETLNQAETKSKSL------ESQV 1497
Cdd:PRK02224 532 IEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAR---EEVAELNSKLAELKERIESLERIRTLLaaiadaEDEI 608
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1498 ENLQ---KTLSEKETEARN----LQEQTVQLQSEL--SRLRQDLQDRTTQEEQLRQ------QITEKEEKTRKAIVAAKS 1562
Cdd:PRK02224 609 ERLRekrEALAELNDERRErlaeKRERKRELEAEFdeARIEEAREDKERAEEYLEQveekldELREERDDLQAEIGAVEN 688
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*...
gi 633226 1563 KIAHLAGVKDQLtKENEELKQRNGALDQQKDELDVRITALKSQYEGR-ISRLERELRE 1619
Cdd:PRK02224 689 ELEELEELRERR-EALENRVEALEALYDEAEELESMYGDLRAELRQRnVETLERMLNE 745
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
667-1046 |
2.24e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 56.18 E-value: 2.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 667 EAKAALKQLQEIFENYKKEKAENEKI---QNEQLEKLQEQVTDLRSQNTKISTQLDFASKRYEMLQDNVEGYRREITSLH 743
Cdd:TIGR04523 311 ELKSELKNQEKKLEEIQNQISQNNKIisqLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLE 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 744 ERNQKLTATTQKQEQIintmtqdlrgaNEKLavaEVRAENLKKEKEMLklsevrlsqqresllaEQRGQNLLLTNLQtiq 823
Cdd:TIGR04523 391 SQINDLESKIQNQEKL-----------NQQK---DEQIKKLQQEKELL----------------EKEIERLKETIIK--- 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 824 gilersetetkqrLSSQIEKLEHEISHLKKKLENEVEQRHTLTRNLDVQLLDTKRqldTETNLHLNTKElLKNAQKEIAT 903
Cdd:TIGR04523 438 -------------NNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINK---IKQNLEQKQKE-LKSKEKELKK 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 904 LKQHLSNMEVQVASQSSQrtgkgQPSNKEDVDDLVSQLRQTEEQVNDLKERLKTSTSNVEQYQamvtsLEESLNKEKQVT 983
Cdd:TIGR04523 501 LNEEKKELEEKVKDLTKK-----ISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKEN-----LEKEIDEKNKEI 570
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 633226 984 EEVRKNIEVRLKEsaefQTQLEKKLMEVEKEKQELqddkRRAIESMEQQLSELKKTLSSVQNE 1046
Cdd:TIGR04523 571 EELKQTQKSLKKK----QEEKQELIDQKEKEKKDL----IKEIEEKEKKISSLEKELEKAKKE 625
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
671-1220 |
2.55e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 56.23 E-value: 2.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 671 ALKQLQEIFENYKKEKAENEKIQnEQLEKLQEQVTDLRSQNTKISTQLDFASKRYEMLQDNVEGYRREITSLHERNQKLT 750
Cdd:PRK03918 163 AYKNLGEVIKEIKRRIERLEKFI-KRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIE 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 751 AT---TQKQEQIINTMTQDLRGANEKLAVAEVRAENLK-KEKEMLKLSE-----VRLSQQRESLLAEQRGQNLLLTNL-Q 820
Cdd:PRK03918 242 ELekeLESLEGSKRKLEEKIRELEERIEELKKEIEELEeKVKELKELKEkaeeyIKLSEFYEEYLDELREIEKRLSRLeE 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 821 TIQGILER-SETETKqrlSSQIEKLEHEISHLKKKLEnEVEQRHTL---TRNLDVQLLDTKRQLDTETNLHLNTK-ELLK 895
Cdd:PRK03918 322 EINGIEERiKELEEK---EERLEELKKKLKELEKRLE-ELEERHELyeeAKAKKEELERLKKRLTGLTPEKLEKElEELE 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 896 NAQKEIATLKQHLSNMEVQVASQSSQRTGKGQPSNKEDVDDLVSQLRQTEEQVNDLKERLKTSTSNVEQYQAMVTSLEES 975
Cdd:PRK03918 398 KAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERK 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 976 LNKEKQVTEEVRKNIE--VRLKESAEFQTQLEKKLMEVEKEKQElqdDKRRAIESMEQQLSELKKTLSSVQNEVQ--EAL 1051
Cdd:PRK03918 478 LRKELRELEKVLKKESelIKLKELAEQLKELEEKLKKYNLEELE---KKAEEYEKLKEKLIKLKGEIKSLKKELEklEEL 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1052 QRASTALSNE-QQARRDCQEQAKIAVEAQNKYERELmlhAADVEALQAAKEQVSKMASVRQHLEETTQKAESQLLECKAS 1130
Cdd:PRK03918 555 KKKLAELEKKlDELEEELAELLKELEELGFESVEEL---EERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKA 631
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1131 WEERERMLKDeVSKCVCRCEDLEKqnRLLHDQIEKLSDKVVASVKEgvQGPLNVSLSEEGKSQEQILEILRFIRREK-EI 1209
Cdd:PRK03918 632 FEELAETEKR-LEELRKELEELEK--KYSEEEYEELREEYLELSRE--LAGLRAELEELEKRREEIKKTLEKLKEELeER 706
|
570
....*....|.
gi 633226 1210 AETRFEVAQVE 1220
Cdd:PRK03918 707 EKAKKELEKLE 717
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
816-1529 |
2.72e-07 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 56.39 E-value: 2.72e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 816 LTNLQTIQGIL-ERSETETKQRLSSQIEKLEHEISHLKKKLENEVEQRHTLTRNLDVQLLDTKRQLDTETNlhlNTKELL 894
Cdd:pfam12128 227 IRDIQAIAGIMkIRPEFTKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDD---QWKEKR 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 895 KNAQKEIATLKQHLSNMEVQVASQSSQRtGKGQPSNKEDVDDLVSQLRQTEEQVNDLKERLKtstsnveqyqamvtSLEE 974
Cdd:pfam12128 304 DELNGELSAADAAVAKDRSELEALEDQH-GAFLDADIETAAADQEQLPSWQSELENLEERLK--------------ALTG 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 975 SLNKEKQVTEEVRKNIEVRLK-ESAEFQTQLEKKLMEVEKEKQELQDDkrraiesMEQQLSELKKTLSSVQNEVQEALQR 1053
Cdd:pfam12128 369 KHQDVTAKYNRRRSKIKEQNNrDIAGIKDKLAKIREARDRQLAVAEDD-------LQALESELREQLEAGKLEFNEEEYR 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1054 ASTALSNEQ------QARRDCQEQAKIAVEAQNKYERELMLHAADVEALQAAKEQVSKMasvRQHLEETTQKAESQLLEC 1127
Cdd:pfam12128 442 LKSRLGELKlrlnqaTATPELLLQLENFDERIERAREEQEAANAEVERLQSELRQARKR---RDQASEALRQASRRLEER 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1128 KASWEERERMLKDEVSKCVcrcEDLEKQNRLLHDQIEKlsdkvVASVKEGVQGPLNVSLSEEGKSQEQILEILrfirrek 1207
Cdd:pfam12128 519 QSALDELELQLFPQAGTLL---HFLRKEAPDWEQSIGK-----VISPELLHRTDLDPEVWDGSVGGELNLYGV------- 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1208 eiaetRFEVAQVESLRYRQRVELLERELQELEDSLNAEREKVQVTAKTMAQ-HEELMKKTETMNVVMETNKMLREEKERL 1286
Cdd:pfam12128 584 -----KLDLKRIDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQaNGELEKASREETFARTALKNARLDLRRL 658
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1287 EQDLQQMQAKVRKleldilPLQEANAELSEKSGMLQAEKKLLEEDVKRWKARNQHLVSQQKDPDTEEYRKLLSEKEVhtk 1366
Cdd:pfam12128 659 FDEKQSEKDKKNK------ALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDA--- 729
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1367 riqqlteEIGRLKAEIARSNASLTNNQNLIQS-LKEDLNKVRTEKETIQKdLDAKIIDIQEKVKTITQVKKIGRRYKTQY 1445
Cdd:pfam12128 730 -------QLALLKAAIAARRSGAKAELKALETwYKRDLASLGVDPDVIAK-LKREIRTLERKIERIAVRRQEVLRYFDWY 801
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1446 eelkaqqdkvmetsaqssgdhqeQHVSVQEMQELKETLNQAETKSKSLESQVENLQKT----LSEKETEARNLQEQTVQL 1521
Cdd:pfam12128 802 -----------------------QETWLQRRPRLATQLSNIERAISELQQQLARLIADtklrRAKLEMERKASEKQQVRL 858
|
....*...
gi 633226 1522 QSELSRLR 1529
Cdd:pfam12128 859 SENLRGLR 866
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
423-1036 |
2.92e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.10 E-value: 2.92e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 423 LDEIVKEVEAKAPILKRQREEYERAQ--------KAVASLSVKLEQAMKEIQRLQEDTDKANKQSSVLERDNRRMEIQVK 494
Cdd:COG1196 191 LEDILGELERQLEPLERQAEKAERYRelkeelkeLEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELE 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 495 DLSQQIRVLLMELEEARGNHVIRDEEVSSADissssevisqhlvsyRNIEELQQQNQRLLVALRELGETrereeqettss 574
Cdd:COG1196 271 ELRLELEELELELEEAQAEEYELLAELARLE---------------QDIARLEERRRELEERLEELEEE----------- 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 575 kITELQLKLESALTELEQLRKSRQHQMQLVDSIVRQRDMYRILLSQTTGVAIPLHASSLDDVSLASTPKRPSTSQTvstp 654
Cdd:COG1196 325 -LAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELA---- 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 655 apvpvIESTEAIEAKAALKQLQEIFENYKKEKAENEKIQNEQLEKLQEQVTDLRSQNTKISTQLDFASKRYEMLQDNVEG 734
Cdd:COG1196 400 -----AQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAAL 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 735 YRREITSLHERNQKLTATTQKQEQIINTMTQDLRGANEKLAVAEVR------AENLKKEKEMLKLSEVRLS-----QQRE 803
Cdd:COG1196 475 LEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRglagavAVLIGVEAAYEAALEAALAaalqnIVVE 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 804 SLLAEQRGQNLLLTNLQTIQGILErsetETKQRLSSQIEKLEHEISHLKKKLENEVEQRHTLTRNLDVQLLDTKRQLDTE 883
Cdd:COG1196 555 DDEVAAAAIEYLKAAKAGRATFLP----LDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAA 630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 884 TNLHLNTKELLKNAQKEIATLKQHLSNMEVQVASQSSQRTGKGQPSNKEDVDDLVSQLRQTEEQVNDLKERLKTSTSNVE 963
Cdd:COG1196 631 RLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELA 710
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 633226 964 QYQAMVTSLEESLNKEKQVTEEVRKNIEVRLKESAEFQTQLEKKLMEVEKEKQELQddkrRAIESMEQQLSEL 1036
Cdd:COG1196 711 EAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELE----RELERLEREIEAL 779
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1474-1623 |
2.94e-07 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 53.78 E-value: 2.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1474 QEMQELKETLNQAETKSKSLESQVENLQKTLSEKETEARNLQEQTVQLQSELSRLR--QDLQDRTTQEEQLRQQITEKEE 1551
Cdd:COG1579 31 AELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRnnKEYEALQKEIESLKRRISDLED 110
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 633226 1552 KTRKAIVAAKSKIAHLAGVKDQLTKENEELKQRNGALDQQKDELDVRITALKSQYEGRISRLERELREHQER 1623
Cdd:COG1579 111 EILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAKIPPELLALYER 182
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
814-1057 |
3.59e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.77 E-value: 3.59e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 814 LLLTNLQTIQGILERSETETKQRLSSQIEKLEHEISHLKKKLENEVEQRhtltRNLDVQLLDTKRQL-DTETNLHLNTKE 892
Cdd:COG4942 9 LLLALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQL----AALERRIAALARRIrALEQELAALEAE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 893 lLKNAQKEIATLKQHLSNMEVQVASQ--SSQRTGKGQPS----NKEDVDDLVSQLRQTEEQVNDLKERLKTstsnVEQYQ 966
Cdd:COG4942 85 -LAELEKEIAELRAELEAQKEELAELlrALYRLGRQPPLalllSPEDFLDAVRRLQYLKYLAPARREQAEE----LRADL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 967 AMVTSLEESLNKEKQVTEEVRKNIEVRLKESAEFQTQLEKKLMEVEKEKQELQddkrRAIESMEQQLSELKKTLSSVQNE 1046
Cdd:COG4942 160 AELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELA----AELAELQQEAEELEALIARLEAE 235
|
250
....*....|.
gi 633226 1047 VQEALQRASTA 1057
Cdd:COG4942 236 AAAAAERTPAA 246
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
25-273 |
4.55e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.46 E-value: 4.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 25 LEKFLADQQSEIDGLKGRHEKFKVESEQQYFEIEKRLSHSQERLvneTRECQSLRLELEKLNNQLKaltEKNKELEIAQD 104
Cdd:TIGR02169 249 LEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRV---KEKIGELEAEIASLERSIA---EKERELEDAEE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 105 RNIAIQSQFTRTKEE-------LEAEKRDLIRTNERLSQELEYLTEDVKRLNEKLKESNTTKGEL---QLKLDELQASDV 174
Cdd:TIGR02169 323 RLAKLEAEIDKLLAEieelereIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELkdyREKLEKLKREIN 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 175 SVKYREKRLEQEKELLHSQNTWLNTELKTKTDELLALG---REKGNEILELKCNLENKKEEVSRLEEQMNGLKTSNEHLQ 251
Cdd:TIGR02169 403 ELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEeekEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVE 482
|
250 260
....*....|....*....|..
gi 633226 252 KHVEDLLTKLKEAKEQQASMEE 273
Cdd:TIGR02169 483 KELSKLQRELAEAEAQARASEE 504
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
13-352 |
5.57e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.46 E-value: 5.57e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 13 ELNKLpKSVQNKLEKFLADQQSEIDGLKGRHEKFKVESEQqyfeIEKRLSHSQERLVNETRECQSLRLELEKLNNQLKAL 92
Cdd:TIGR02169 689 ELSSL-QSELRRIENRLDELSQELSDASRKIGEIEKEIEQ----LEQEEEKLKERLEELEEDLSSLEQEIENVKSELKEL 763
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 93 TEKNKELEiaqdrniaiqSQFTRTKEELEAEKRDL----IRTNERLSQELE-YLTEDVKRLNE---KLKESNTTKGELQL 164
Cdd:TIGR02169 764 EARIEELE----------EDLHKLEEALNDLEARLshsrIPEIQAELSKLEeEVSRIEARLREieqKLNRLTLEKEYLEK 833
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 165 KLDELQASDVSVKYREKRLEQEKELLHSQNTWLNTELKTKTDELLALGREKGNeileLKCNLENKKEEVSRLEEQMNGLK 244
Cdd:TIGR02169 834 EIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGD----LKKERDELEAQLRELERKIEELE 909
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 245 TSNEHLQKHVEDLLTKLKEAKEQQASMEEKFHNELNAHIKLSNLyksaaDDSEAKSNELTRAVEELHKLLKEAGEANKAI 324
Cdd:TIGR02169 910 AQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSL-----EDVQAELQRVEEEIRALEPVNMLAIQEYEEV 984
|
330 340 350
....*....|....*....|....*....|.
gi 633226 325 QDHLLEVEQSKDQMEKE---MLEKIGRLEKE 352
Cdd:TIGR02169 985 LKRLDELKEKRAKLEEErkaILERIEEYEKK 1015
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1365-1601 |
5.65e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.38 E-value: 5.65e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1365 TKRIQQLTEEIGRLKAEIARSNASLTNNQNLIQSLKEDLNKVRTEKETIQKDLDAKIIDIQEKVKTITQVKKIGRRYKTQ 1444
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1445 YEELKAQQDKVMETSAQSSGDHQEQHVSVQEmqelkeTLNQAETKSKSLESQVENLQKTLSEKETEARNLQEQTVQLQSE 1524
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLALLLSPE------DFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAE 172
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 633226 1525 LSRLRQDLQDRTTQEEQLRQQITEKEektrKAIVAAKSKIAHLAGVKDQLTKENEELKQRNGALDQQKDELDVRITA 1601
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQ----KLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1069-1646 |
6.13e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.06 E-value: 6.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1069 QEQAKIAVEAQNKYER----ELMLHAADVEALQAAKEQVSKMASVRQHLEEttqKAESQLLECKASWEE-RERMLKDEVS 1143
Cdd:TIGR02168 206 ERQAEKAERYKELKAElrelELALLVLRLEELREELEELQEELKEAEEELE---ELTAELQELEEKLEElRLEVSELEEE 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1144 KCVCRCEDLEKQNRL--LHDQIEKLSDKVVASVKEGVQgpLNVSLSEEGKSQEQILEILRFIRREKEIAETRFEVAQVES 1221
Cdd:TIGR02168 283 IEELQKELYALANEIsrLEQQKQILRERLANLERQLEE--LEAQLEELESKLDELAEELAELEEKLEELKEELESLEAEL 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1222 LRYRQRVELLERELQELEDSLNAEREKV----QVTAKTMAQHEELMKKTETMNVVMETNKMLREE--KERLEQDLQQMQA 1295
Cdd:TIGR02168 361 EELEAELEELESRLEELEEQLETLRSKVaqleLQIASLNNEIERLEARLERLEDRRERLQQEIEEllKKLEEAELKELQA 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1296 KVRKLELDILPLQEANAELSEKSGMLQAEKKLLEEDVKRWKARNQHLVSQQKDPDT--EEYRKLLSEKEVHTKRIQQLTE 1373
Cdd:TIGR02168 441 ELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERlqENLEGFSEGVKALLKNQSGLSG 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1374 EIGRLKAEI---------------ARSNASLTNNQN----LIQSLKE-----------------DLNKVRTEKETIQKDL 1417
Cdd:TIGR02168 521 ILGVLSELIsvdegyeaaieaalgGRLQAVVVENLNaakkAIAFLKQnelgrvtflpldsikgtEIQGNDREILKNIEGF 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1418 DAKIIDIQEK-----------------VKTITQVKKIGRRYKTQYEELKAQQDKVMETSAQSSGDHQEQHVSVQEMQELK 1480
Cdd:TIGR02168 601 LGVAKDLVKFdpklrkalsyllggvlvVDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREIE 680
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1481 EtlnqAETKSKSLESQVENLQKTLSEKETEARNLQEQTVQLQSELSRLRQDLQDRTTQEEQLRQQITEKEEKTRKAIVAA 1560
Cdd:TIGR02168 681 E----LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKEL 756
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1561 KSKIAHLAGVKDQLTKENEELKQRNGALDQQKDELDVRITALKSQYEgRISRLERELREHQERHLEQRDEPQEPSNKVPE 1640
Cdd:TIGR02168 757 TELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALRE-ALDELRAELTLLNEEAANLRERLESLERRIAA 835
|
....*.
gi 633226 1641 QQRQIT 1646
Cdd:TIGR02168 836 TERRLE 841
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1368-1644 |
8.15e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 54.64 E-value: 8.15e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1368 IQQLTEEIGRLKAEIARSNASLTNNQNLIQSLKEDLNKVRTEKETIQKDLDAKIIDIQEKVKTITQVKKIGRRYKTQYEE 1447
Cdd:TIGR04523 126 LNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSN 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1448 LKAQqdkvmetsaqssgdhqeqhvsVQEMQELKETLNQAETKSKSLESQVENLQKTLSEKETEARNLQEQTVQLQSELSR 1527
Cdd:TIGR04523 206 LKKK---------------------IQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNK 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1528 LRQDLQDRTTQEEQLRQQITEKEEKTRKaivaAKSKIAHLAGVKDQ-LTKE-NEELKQRNGALDQQKDELDvRITALKSQ 1605
Cdd:TIGR04523 265 IKKQLSEKQKELEQNNKKIKELEKQLNQ----LKSEISDLNNQKEQdWNKElKSELKNQEKKLEEIQNQIS-QNNKIISQ 339
|
250 260 270
....*....|....*....|....*....|....*....
gi 633226 1606 YEGRISRLERELREHQERHLEQRDEPQEPSNKVPEQQRQ 1644
Cdd:TIGR04523 340 LNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKE 378
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
666-1621 |
9.40e-07 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 54.41 E-value: 9.40e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 666 IEAKAALKQLQEIFENYKKEKAENEKIQNEQ------LEKLQEQVTDLRSQNTKI--------------STQLDFASKRY 725
Cdd:pfam01576 96 NEKKKMQQHIQDLEEQLDEEEAARQKLQLEKvtteakIKKLEEDILLLEDQNSKLskerklleerisefTSNLAEEEEKA 175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 726 EMLQDNVEGYRREITSLHERNQKLTATTQKQEQIINTMTQDLRGANEKLA-----VAEVRAENLKKEKEmlklsevrlsq 800
Cdd:pfam01576 176 KSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAelqaqIAELRAQLAKKEEE----------- 244
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 801 qresllaeqrgqnllltnlqtIQGILERSETETKQRLSSQ--IEKLEHEISHLKKKLENEVEQRHTLT---RNLDVQLLD 875
Cdd:pfam01576 245 ---------------------LQAALARLEEETAQKNNALkkIRELEAQISELQEDLESERAARNKAEkqrRDLGEELEA 303
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 876 TKRQLDTETNLHLNTKELLKNAQKEIATLKQHLS----NMEVQVASQSSQRTgkgqpsnkEDVDDLVSQLrqteEQVNDL 951
Cdd:pfam01576 304 LKTELEDTLDTTAAQQELRSKREQEVTELKKALEeetrSHEAQLQEMRQKHT--------QALEELTEQL----EQAKRN 371
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 952 KERLKTSTSNVEQYQAMVTSLEESLNKEKQVTEEVRKNIEVRLKEsaefqtqLEKKLMEVEKEKQELQDDKRR------- 1024
Cdd:pfam01576 372 KANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQE-------LQARLSESERQRAELAEKLSKlqseles 444
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1025 ---AIESMEQQLSELKKTLSSVQNE---VQEALQRA-------STALSNEQQARRDCQEQAKIAVEAQNKYERELMLHAA 1091
Cdd:pfam01576 445 vssLLNEAEGKNIKLSKDVSSLESQlqdTQELLQEEtrqklnlSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQA 524
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1092 dveALQAAKEQVSKMASVRQHLEETTQKAESQLLECKASWEERERmlkdevskcvcRCEDLEKQNRLLHDQIEKLsdkvv 1171
Cdd:pfam01576 525 ---QLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAA-----------AYDKLEKTKNRLQQELDDL----- 585
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1172 aSVKEGVQGPLNVSLSEEGKSQEQILeilrfirrekeiAETRFEVAQVESLRYRqrvellerelqeledslnAEREKVQV 1251
Cdd:pfam01576 586 -LVDLDHQRQLVSNLEKKQKKFDQML------------AEEKAISARYAEERDR------------------AEAEAREK 634
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1252 TAKTMAQHEELMKKTETMNVVMETNKMLREEKERLEQDLQQMQAKVRKLELDILPLQEANAELSEKSGMLQAEKKLLEED 1331
Cdd:pfam01576 635 ETRALSLARALEEALEAKEELERTNKQLRAEMEDLVSSKDDVGKNVHELERSKRALEQQVEEMKTQLEELEDELQATEDA 714
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1332 VKRWKARNQHLVSQQKdpdteeyRKLLSEKEVHTKRIQQLTEEIGRLKAEIARSNASLTNNQNLIQSLKEDLNKVRTEKE 1411
Cdd:pfam01576 715 KLRLEVNMQALKAQFE-------RDLQARDEQGEEKRRQLVKQVRELEAELEDERKQRAQAVAAKKKLELDLKELEAQID 787
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1412 TIQKDLDakiidiqEKVKTITQVKKIGRRYKTQYEELKAQQDKVMETSAQSSGDHQEQHVsvqEMQELKETLNQAETKSK 1491
Cdd:pfam01576 788 AANKGRE-------EAVKQLKKLQAQMKDLQRELEEARASRDEILAQSKESEKKLKNLEA---ELLQLQEDLAASERARR 857
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1492 SLESQVENLQKTLSEKETEARNLQEQTVQLQSELSRLRQDLQDRTTQEEQLR---QQITEKEEKTRKAIVAAKSKIAHLA 1568
Cdd:pfam01576 858 QAQQERDELADEIASGASGKSALQDEKRRLEARIAQLEEELEEEQSNTELLNdrlRKSTLQVEQLTTELAAERSTSQKSE 937
|
970 980 990 1000 1010
....*....|....*....|....*....|....*....|....*....|....
gi 633226 1569 GVKDQLTKENEELKQRNGALDQQ-KDELDVRITALKSQYEGRISRLERELREHQ 1621
Cdd:pfam01576 938 SARQQLERQNKELKAKLQEMEGTvKSKFKSSIAALEAKIAQLEEQLEQESRERQ 991
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
278-1119 |
1.45e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.99 E-value: 1.45e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 278 ELNAHIKLSNLYKSAADDSEAKSNELTRAVEELHKLLKEAGEANKAIQDHLLEVEQSKDQMekemlekigrleKELENAN 357
Cdd:PTZ00121 1061 EAKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAK------------KKAEDAR 1128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 358 DLLSATKRKGAILSEEELAAMSPTAAAVAKIVKPGMKLTELYNAYVETQDQLLLEKLENKRInkylDEIVKEVEAKAPIL 437
Cdd:PTZ00121 1129 KAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKA----EELRKAEDARKAEA 1204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 438 KRQREEYERAQKAVASLSVKLEQAMKEIQRLQEDTDKANKQSSVLERDNRRMEIQVKDLSQQIRVLLMELEEAR-GNHVI 516
Cdd:PTZ00121 1205 ARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARkADELK 1284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 517 RDEEVSSADISSSSEVIsqhlvsyRNIEELQQQNQrllvalrelgetrereeqetTSSKITELQLKLESALTELEQLRKS 596
Cdd:PTZ00121 1285 KAEEKKKADEAKKAEEK-------KKADEAKKKAE--------------------EAKKADEAKKKAEEAKKKADAAKKK 1337
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 597 RQHqmqlvdsivrqrdmyrillsqttgvaiplhASSLDDVSLASTPKRPSTSQTVSTPAPVPVIESTEAIEAKAALKQLQ 676
Cdd:PTZ00121 1338 AEE------------------------------AKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKA 1387
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 677 EIFENYK--KEKAENEKIQNEQLEKLQE--QVTDLRSQNTKISTQLDFASKRYEMLQDNVEGYRREITSLHERNQKLTAT 752
Cdd:PTZ00121 1388 EEKKKADeaKKKAEEDKKKADELKKAAAakKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAE 1467
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 753 TQKQEQIINTMTQDLRGANEklavAEVRAENLKKEKEMLKLSEVRLSQQRESLLAEQRGQnllltnlqtiqgiLERSETE 832
Cdd:PTZ00121 1468 EAKKADEAKKKAEEAKKADE----AKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKK-------------ADEAKKA 1530
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 833 TKQRLSSQIEKLEheishlKKKLENEVEQRHTLTRNLDVQLLDTKRQLDTETNLHLNTKELLKNAQKeiatlkqhlSNME 912
Cdd:PTZ00121 1531 EEAKKADEAKKAE------EKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEE---------ARIE 1595
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 913 VQVASQSSQRTGKGQPSNKEDVDDLVSQLRQTEEQVNDLKERLKTSTSNvEQYQAMVTSLEESLNKEKQVTEEVRKNIEV 992
Cdd:PTZ00121 1596 EVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAE-EKKKAEELKKAEEENKIKAAEEAKKAEEDK 1674
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 993 RLKESAEFQTQLEKKLMEVEKEKQElqddKRRAIESMEQQLSELKKTLSSVQNEVQEALQRAstalsneQQARRDCQEQA 1072
Cdd:PTZ00121 1675 KKAEEAKKAEEDEKKAAEALKKEAE----EAKKAEELKKKEAEEKKKAEELKKAEEENKIKA-------EEAKKEAEEDK 1743
|
810 820 830 840
....*....|....*....|....*....|....*....|....*...
gi 633226 1073 KIAVEAQ-NKYERELMLHAADVEALQAAKEQVSKMASVRQHLEETTQK 1119
Cdd:PTZ00121 1744 KKAEEAKkDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEK 1791
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
680-1427 |
1.51e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 53.57 E-value: 1.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 680 ENYKKEKAENEKIQNEQLEKLQEQVTDLRSQNTKISTQLDFASKRYEMLQDNVEGYRREITSLHERNQKLTAttqKQEQI 759
Cdd:pfam05483 63 EGLKDSDFENSEGLSRLYSKLYKEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQELQFENEKVSL---KLEEE 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 760 INTMTQDLRGANEKLAVAEVRAENLKKEKEMLKLSEVRLSQQRESLLAEQRGQNLLLTNLQTIQGILERSETETKQRLSS 839
Cdd:pfam05483 140 IQENKDLIKENNATRHLCNLLKETCARSAEKTKKYEYEREETRQVYMDLNNNIEKMILAFEELRVQAENARLEMHFKLKE 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 840 QIEKleheISHLKKKLENEVEQRHTLTRNLDVQLLDTKRQLDTETNL---------HLNTKELLKNAQKEIATLKQHLSN 910
Cdd:pfam05483 220 DHEK----IQHLEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLleesrdkanQLEEKTKLQDENLKELIEKKDHLT 295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 911 MEVQVASQSSQRTGKGQPSNKEDVDDLVSQLRQ-TEEQVNDLKERLKTSTSN---VEQYQAMVTSLEESLNKEKQVTEEV 986
Cdd:pfam05483 296 KELEDIKMSLQRSMSTQKALEEDLQIATKTICQlTEEKEAQMEELNKAKAAHsfvVTEFEATTCSLEELLRTEQQRLEKN 375
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 987 RKNIEVRLKESAEFQTQLEKklMEVEKEKQELQDDKRRAIESMEQQLSELKKTLSSVQNEVQEALQRASTALSNEQQARR 1066
Cdd:pfam05483 376 EDQLKIITMELQKKSSELEE--MTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIH 453
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1067 DCQEQAKIAVEAQNKYERELmlhaadvealqaaKEQVSKMASVRQHLEETTQKAESQLLECKASWEERERMLKdEVSKCV 1146
Cdd:pfam05483 454 DLEIQLTAIKTSEEHYLKEV-------------EDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTL-ELKKHQ 519
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1147 CRCEDLEKQNRLLHDQIEKLSDKvvasvkegvqgplnvslseEGKSQEQILEILRFIRREKEIAETRFEVAQVESLRYRQ 1226
Cdd:pfam05483 520 EDIINCKKQEERMLKQIENLEEK-------------------EMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEY 580
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1227 RVELLERELQELEDSLNAEREKVQvtaktmaqheelmKKTETMNVVMETNKMLREEKERLEQDLQQMQAKVRKLELDILP 1306
Cdd:pfam05483 581 EVLKKEKQMKILENKCNNLKKQIE-------------NKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELAS 647
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1307 LQEANAELSEKSGMLQAEKKLLEE----DVKRWKARNQHLVSQQKDPDTEEYRKL-----LSEKEVHT--KRIQQLTEEI 1375
Cdd:pfam05483 648 AKQKFEEIIDNYQKEIEDKKISEEklleEVEKAKAIADEAVKLQKEIDKRCQHKIaemvaLMEKHKHQydKIIEERDSEL 727
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*....
gi 633226 1376 GRLKAEIARSNA-------SLTNNQNLIQSLKEDLNKVRTEKETIQKDLDAKIIDIQEK 1427
Cdd:pfam05483 728 GLYKNKEQEQSSakaaleiELSNIKAELLSLKKQLEIEKEEKEKLKMEAKENTAILKDK 786
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
780-1621 |
1.86e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 53.64 E-value: 1.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 780 RAENLKKEKEMLKLSEVRLS--QQRESLLAEQRgqNLLLTNLQTIQGILERSEtETKQRLSSQIEKLEHEISHLKKKLEN 857
Cdd:pfam01576 10 KEEELQKVKERQQKAESELKelEKKHQQLCEEK--NALQEQLQAETELCAEAE-EMRARLAARKQELEEILHELESRLEE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 858 EVE---QRHTLTRNLDVQLLDTKRQLDTETNLHlntkellKNAQKEIATLKQHLSNMEVQVASQSSQRT--GKGQPSNKE 932
Cdd:pfam01576 87 EEErsqQLQNEKKKMQQHIQDLEEQLDEEEAAR-------QKLQLEKVTTEAKIKKLEEDILLLEDQNSklSKERKLLEE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 933 DVDDLVSQLRQTEEQVNDLkERLKTstsnveQYQAMVTSLEESLNKEKQVTEEVRKNIEVRLKES-------AEFQTQLE 1005
Cdd:pfam01576 160 RISEFTSNLAEEEEKAKSL-SKLKN------KHEAMISDLEERLKKEEKGRQELEKAKRKLEGEStdlqeqiAELQAQIA 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1006 KKLMEVEKEKQELQDDKRRAIESMEQQLSELKKT--LSSVQNEVQEALQRASTALSNEQQARRDCQEQ------------ 1071
Cdd:pfam01576 233 ELRAQLAKKEEELQAALARLEEETAQKNNALKKIreLEAQISELQEDLESERAARNKAEKQRRDLGEElealkteledtl 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1072 --AKIAVEAQNKYERELML-----------HAADV--------EALQAAKEQVSKMASVRQHLEETTQKAESQLLE---- 1126
Cdd:pfam01576 313 dtTAAQQELRSKREQEVTElkkaleeetrsHEAQLqemrqkhtQALEELTEQLEQAKRNKANLEKAKQALESENAElqae 392
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1127 ------CKASWEERERMLKDEVSKCVCRCEDLEKQNRLLHDQIEKLSDKVvasvkEGVQGPLNVSLSEEGKSQEQILEIL 1200
Cdd:pfam01576 393 lrtlqqAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSEL-----ESVSSLLNEAEGKNIKLSKDVSSLE 467
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1201 RFIRREKEIAETRFEVAQVESLRYRQRVELLERELQELEDSLNAEREKVQVTAKTMAQHEELMKKTETMNVVM----ETN 1276
Cdd:pfam01576 468 SQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLealeEGK 547
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1277 KMLREEKERLEQDLQQMQAKVRKLELDILPLQEanaELSEKSGMLQAEKKLLEEDVKRWKARNQHL-----VSQQKDPDT 1351
Cdd:pfam01576 548 KRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQ---ELDDLLVDLDHQRQLVSNLEKKQKKFDQMLaeekaISARYAEER 624
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1352 EEYRKLLSEKEVHTKRIQQLTEEIGRLKAEIARSNASLTNNQNLIQSLKEDLNKVRTEKETIQKDLDAKIIDIQEKVKTI 1431
Cdd:pfam01576 625 DRAEAEAREKETRALSLARALEEALEAKEELERTNKQLRAEMEDLVSSKDDVGKNVHELERSKRALEQQVEEMKTQLEEL 704
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1432 T---QVKKIGR-RYKTQYEELKAQQDKVMETSAQSSGDHQEQHV-SVQEMQ-ELKETLNQA----------ETKSKSLES 1495
Cdd:pfam01576 705 EdelQATEDAKlRLEVNMQALKAQFERDLQARDEQGEEKRRQLVkQVRELEaELEDERKQRaqavaakkklELDLKELEA 784
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1496 QVENLQKTLSEKETEARNLQEQTVQLQSELSRLRQDLQDRTTQEEQlrqqiTEKEEKTRKA-IVAAKSKIAHLAGVKDQL 1574
Cdd:pfam01576 785 QIDAANKGREEAVKQLKKLQAQMKDLQRELEEARASRDEILAQSKE-----SEKKLKNLEAeLLQLQEDLAASERARRQA 859
|
890 900 910 920
....*....|....*....|....*....|....*....|....*....
gi 633226 1575 TKENEELKQR--NGALDQQKDELDvritalKSQYEGRISRLERELREHQ 1621
Cdd:pfam01576 860 QQERDELADEiaSGASGKSALQDE------KRRLEARIAQLEEELEEEQ 902
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1401-1591 |
2.04e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.38 E-value: 2.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1401 EDLNKVRTEKETIQKDLDAkiIDIQEKVKTITQVKKIGRRY---KTQYEELKAQQDKVMETSAQSSGDHQEQHvsvQEMQ 1477
Cdd:COG4913 252 ELLEPIRELAERYAAARER--LAELEYLRAALRLWFAQRRLellEAELEELRAELARLEAELERLEARLDALR---EELD 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1478 ELKETLNQAETKSK-SLESQVENLQKTLSEKETEARNLQEQTVQLQSELSRLRQDLQDRTTQEEQLRQQITEKEEKTRKA 1556
Cdd:COG4913 327 ELEAQIRGNGGDRLeQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEA 406
|
170 180 190
....*....|....*....|....*....|....*
gi 633226 1557 IVAAKSKIAHLAGVKDQLTKENEELKQRNGALDQQ 1591
Cdd:COG4913 407 LAEAEAALRDLRRELRELEAEIASLERRKSNIPAR 441
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1193-1630 |
2.63e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.85 E-value: 2.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1193 QEQILEILRFIRREKEIAETRFEVAQVEsLRYRQRVELLERELQELEDSLNAEREKVQVTAKTMAQHEELMKKtetmnvv 1272
Cdd:COG4717 52 EKEADELFKPQGRKPELNLKELKELEEE-LKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEK------- 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1273 METNKMLREEKERLEQDLQQMQAKVRKLELDILPLQEanaelseksgmLQAEKKLLEEDVKRWKARNQHLVSQQKDPDTE 1352
Cdd:COG4717 124 LLQLLPLYQELEALEAELAELPERLEELEERLEELRE-----------LEEELEELEAELAELQEELEELLEQLSLATEE 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1353 EYRKLLSEKEVHTKRIQQLTEEIGRLKAEIARSNASLTNNQNLIQSLKEdlnkvrtEKETIQKDLDAKIIDIqekvkTIT 1432
Cdd:COG4717 193 ELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAAL-------EERLKEARLLLLIAAA-----LLA 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1433 QVKKIGRRYKTQYEELKAQQDKVMETSAQSSGDHQEQHVSVQEMQELKETLNQAETKSKSLESQVENLQKTLSEKETEAR 1512
Cdd:COG4717 261 LLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELL 340
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1513 NLQEQTVQLQSELSRLRQDlqdrtTQEEQLRQQITEKEEKTRKAIVAAKSKIAHLAGVKDQLTKENEELKQRNGALDQQK 1592
Cdd:COG4717 341 ELLDRIEELQELLREAEEL-----EEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELL 415
|
410 420 430
....*....|....*....|....*....|....*....
gi 633226 1593 DELDVRITAL-KSQYEGRISRLERELREHQERHLEQRDE 1630
Cdd:COG4717 416 GELEELLEALdEEELEEELEELEEELEELEEELEELREE 454
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
926-1537 |
2.67e-06 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 52.98 E-value: 2.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 926 GQPSNKEDVDDLVSQLRQTEEQVNDLKERLKTSTSNVEQYQamvtSLEESLNKEKQVTEEVRKNIEvrlkESAEFQTQLE 1005
Cdd:PRK01156 146 GDPAQRKKILDEILEINSLERNYDKLKDVIDMLRAEISNID----YLEEKLKSSNLELENIKKQIA----DDEKSHSITL 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1006 KKLMEVEKEKQELQDDKRRAIESMeQQLSELKKTLSSVQNEVQEALQRASTALSNEQQARRDCQEQAKIAVEAQNKYERE 1085
Cdd:PRK01156 218 KEIERLSIEYNNAMDDYNNLKSAL-NELSSLEDMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNY 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1086 LMLHAADVEALQAAKEQVSKMASVRQHLEETTQKAEsqllECKASWEERERMLKdevskcvcRCEDLEKQnrllHDQIEK 1165
Cdd:PRK01156 297 INDYFKYKNDIENKKQILSNIDAEINKYHAIIKKLS----VLQKDYNDYIKKKS--------RYDDLNNQ----ILELEG 360
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1166 LSDKVVASVKEGVQgpLNVSLSEEGKSQEQILEILRFIRREKEIAETRFEVAQVESLRYRQRVELLERELQELEDSLNAE 1245
Cdd:PRK01156 361 YEMDYNSYLKSIES--LKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALREN 438
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1246 REKVqvtaktmaqhEELMKKTETMNVVMETNKMLREEKER-----LEQDLQQMQAKVRKLELDILPLQEanaelsEKSGM 1320
Cdd:PRK01156 439 LDEL----------SRNMEMLNGQSVCPVCGTTLGEEKSNhiinhYNEKKSRLEEKIREIEIEVKDIDE------KIVDL 502
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1321 LQAEKKLLEEDVKRWKARNQHLVSQQKDPdTEEYRKLLSEKEVHTKrIQQLTEEIGRLKAEIARSNASLTNNQNLIQSLK 1400
Cdd:PRK01156 503 KKRKEYLESEEINKSINEYNKIESARADL-EDIKIKINELKDKHDK-YEEIKNRYKSLKLEDLDSKRTSWLNALAVISLI 580
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1401 eDLNKVRTEKETIQKDL---------------------DAKIIDIQEKVKTITQVKKIGRRYKTQYEELKAQQDKVMETS 1459
Cdd:PRK01156 581 -DIETNRSRSNEIKKQLndlesrlqeieigfpddksyiDKSIREIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQI 659
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 633226 1460 AQSSGDHQEQhvsvqemQELKETLNQAETKSKSLESQVENLQKTLSEKETEARNLQEQTVQLQSELSRLRQDLQDRTT 1537
Cdd:PRK01156 660 AEIDSIIPDL-------KEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLESMKK 730
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
744-1063 |
2.76e-06 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 52.99 E-value: 2.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 744 ERNQKLTATTQKQEQIINTMTQDLRGANEKLAVAEVRAENLKKE------KEMLKLSEVRLSQQRESLLAEQ-------- 809
Cdd:PRK11281 66 EQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDndeetrETLSTLSLRQLESRLAQTLDQLqnaqndla 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 810 --------------RGQNLLLTNLQTIQGI---LERSETETKQRLSSQIEKLEHEISHLKKKLENeveQRHTLTRNLDVQ 872
Cdd:PRK11281 146 eynsqlvslqtqpeRAQAALYANSQRLQQIrnlLKGGKVGGKALRPSQRVLLQAEQALLNAQNDL---QRKSLEGNTQLQ 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 873 LLDTKrQLDtETNLHLNtkellkNAQKEIATLKQHLSNMEVQVASQSSQRTGKGQPSNKEDVDDLVSQ------------ 940
Cdd:PRK11281 223 DLLQK-QRD-YLTARIQ------RLEHQLQLLQEAINSKRLTLSEKTVQEAQSQDEAARIQANPLVAQeleinlqlsqrl 294
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 941 LRQTEE---------QVNDLKERLKTSTSNV-EQYQAMVTSLEES--LNKEKQ------VTEEVRKNI-EVRLK------ 995
Cdd:PRK11281 295 LKATEKlntltqqnlRVKNWLDRLTQSERNIkEQISVLKGSLLLSriLYQQQQalpsadLIEGLADRIaDLRLEqfeinq 374
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 996 ------ESAEFQTQLEkklmevEKEKQELQDDKRRAIESM----EQQLSELKKTLSSVQNEV------QEALQRASTALS 1059
Cdd:PRK11281 375 qrdalfQPDAYIDKLE------AGHKSEVTDEVRDALLQLlderRELLDQLNKQLNNQLNLAinlqlnQQQLLSVSDSLQ 448
|
....*.
gi 633226 1060 N--EQQ 1063
Cdd:PRK11281 449 StlTQQ 454
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1467-1614 |
2.93e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 52.71 E-value: 2.93e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1467 QEQHVSVQEMQELKETLNQAETKSKSLESQVENLQKTLSEKETEA---------RNLQEQTVQLQSELSRLRQDLQDRTT 1537
Cdd:COG3206 212 EEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALpellqspviQQLRAQLAELEAELAELSARYTPNHP 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1538 QEEQLRQQI----TEKEEKTRKAIVAAKSKIAHLAGVKDQLTKENEELKQRNGALDQQKDELDV---RITALKSQYEGRI 1610
Cdd:COG3206 292 DVIALRAQIaalrAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRlerEVEVARELYESLL 371
|
....
gi 633226 1611 SRLE 1614
Cdd:COG3206 372 QRLE 375
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
662-1139 |
3.21e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 52.76 E-value: 3.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 662 STEAIEAKaaLKQLQEIFENYKKEKAENEKIQNE--QLEKLQEQVTDLRSQNTKISTQLDFASKRYEMLQDNVEGYRREI 739
Cdd:PRK03918 253 SKRKLEEK--IRELEERIEELKKEIEELEEKVKElkELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERI 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 740 TSLHERNQKLTATTQKQEQI---INTMTQDLRgANEKLAVAEVRAENLKKEKEMLKLSEVrlsqQRESLLAEQRGQNLLl 816
Cdd:PRK03918 331 KELEEKEERLEELKKKLKELekrLEELEERHE-LYEEAKAKKEELERLKKRLTGLTPEKL----EKELEELEKAKEEIE- 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 817 tnlqtiqgiLERSE-TETKQRLSSQIEKLEHEISHLKK--------KLENEVEQRHTLTRNLDVQLLDTKRQLDTETNLH 887
Cdd:PRK03918 405 ---------EEISKiTARIGELKKEIKELKKAIEELKKakgkcpvcGRELTEEHRKELLEEYTAELKRIEKELKEIEEKE 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 888 LNTKELLKNAQKEIATLKQHLSNMEvqVASQSSQRTGKGQPSNKEDVDDLVSQLRQTEEQVNDLKERLKTSTSNVEQYQA 967
Cdd:PRK03918 476 RKLRKELRELEKVLKKESELIKLKE--LAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEE 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 968 MVTSLEEsLNKEKQVTEEVRKNIEVRLKESAefqtqlEKKLMEVEKEKQELQDDKRRAIE--SMEQQLSELKKTLSSVQN 1045
Cdd:PRK03918 554 LKKKLAE-LEKKLDELEEELAELLKELEELG------FESVEELEERLKELEPFYNEYLElkDAEKELEREEKELKKLEE 626
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1046 EVQEALQRASTALSNEQQARRDCQEQAKIAVEAQNKYERELMLHAAdvEALQAAKEQVSKMASVRQHLEETTQKAESQLL 1125
Cdd:PRK03918 627 ELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELS--RELAGLRAELEELEKRREEIKKTLEKLKEELE 704
|
490
....*....|....
gi 633226 1126 ECKASWEERERMLK 1139
Cdd:PRK03918 705 EREKAKKELEKLEK 718
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
29-372 |
3.58e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.46 E-value: 3.58e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 29 LADQQSEIDGLKGRHEKF------KVESEQQYFEIEKRLSHSQERL---------VNETRECQSLRLELEKLNNQLKALT 93
Cdd:COG4717 73 LKELEEELKEAEEKEEEYaelqeeLEELEEELEELEAELEELREELeklekllqlLPLYQELEALEAELAELPERLEELE 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 94 EKNKELEIAQDRNIAIQSQFTRTKEELEAEKRdliRTNERLSQELEYLTEDVKRLNEKLKESNTTKGELQLKLDELQA-- 171
Cdd:COG4717 153 ERLEELRELEEELEELEAELAELQEELEELLE---QLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEel 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 172 ----SDVSVKYREKRLEQEKELL--------HSQNTWLNTELKTKTDELLALG---------------REKGNEILELKC 224
Cdd:COG4717 230 eqleNELEAAALEERLKEARLLLliaaallaLLGLGGSLLSLILTIAGVLFLVlgllallflllarekASLGKEAEELQA 309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 225 NLENKKEEVSRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKFH--NELNAHIKLSNLYKSAADDSEAKSNE 302
Cdd:COG4717 310 LPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEelQLEELEQEIAALLAEAGVEDEEELRA 389
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 633226 303 LTRAVEELHKLLKEAGEANKAIQDHLLEVEQSKDQMEKEML-EKIGRLEKEL-ENANDLLSATKRKGAILSE 372
Cdd:COG4717 390 ALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELeEELEELEEELeELEEELEELREELAELEAE 461
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1243-1645 |
4.22e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 52.48 E-value: 4.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1243 NAEREKVQVTAKTMAQHEEL-----MKKTETMNVVMETNKMLREEKERLeqdlQQMQAKVRKLELDILPLQEANAELSEK 1317
Cdd:pfam01576 43 NALQEQLQAETELCAEAEEMrarlaARKQELEEILHELESRLEEEEERS----QQLQNEKKKMQQHIQDLEEQLDEEEAA 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1318 SGMLQAEKKLLEEDVKRWKARNQHLVSQQKdpdteeyrKLLSEKEVHTKRIQQLTEEIGRLKAEIARSNASLTNNQNLIQ 1397
Cdd:pfam01576 119 RQKLQLEKVTTEAKIKKLEEDILLLEDQNS--------KLSKERKLLEERISEFTSNLAEEEEKAKSLSKLKNKHEAMIS 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1398 SLKEDLN---KVRTEKETIQKDLDAKIIDIQEKVKTI-TQVKKIGRRYKTQYEELKAQQDKVMETSAQSSG---DHQEQH 1470
Cdd:pfam01576 191 DLEERLKkeeKGRQELEKAKRKLEGESTDLQEQIAELqAQIAELRAQLAKKEEELQAALARLEEETAQKNNalkKIRELE 270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1471 VSVQEMQELKET----LNQAETKSKSLESQVENLQKTLSEKETEARNLQEQTVQLQSELSRLRQDLQDRT----TQEEQL 1542
Cdd:pfam01576 271 AQISELQEDLESeraaRNKAEKQRRDLGEELEALKTELEDTLDTTAAQQELRSKREQEVTELKKALEEETrsheAQLQEM 350
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1543 RQQITEKEEKTRKAIVAAKSKIAHLAGVKDQLTKENEELKQRNGALDQQKDELdvritalksqyEGRISRLERELREHQE 1622
Cdd:pfam01576 351 RQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDS-----------EHKRKKLEGQLQELQA 419
|
410 420
....*....|....*....|...
gi 633226 1623 RHLEQRDEPQEPSNKVPEQQRQI 1645
Cdd:pfam01576 420 RLSESERQRAELAEKLSKLQSEL 442
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
978-1630 |
4.33e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 52.28 E-value: 4.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 978 KEKQVTEEVRKNIEVRLKESAEFQTQL------EKKLMEVEKEKQE---LQDDKRRAIESM-----EQQLSELKKTLSSV 1043
Cdd:pfam02463 166 RLKRKKKEALKKLIEETENLAELIIDLeelklqELKLKEQAKKALEyyqLKEKLELEEEYLlyldyLKLNEERIDLLQEL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1044 QNEVQEALQRASTALSNEQQARRDCQEQAKIAVEAQNKYERELMLHAADVEALQAAKEQVSKMAS----VRQHLEETTQK 1119
Cdd:pfam02463 246 LRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVddeeKLKESEKEKKK 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1120 AESQLLECKASWEERERMLKdEVSKCVCRCEDLEKQNRLLHDQIEKLSDKVVASVKEGVQGPLNvSLSEEGKSQEQILEI 1199
Cdd:pfam02463 326 AEKELKKEKEEIEELEKELK-ELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSS-AAKLKEEELELKSEE 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1200 LRFIRREKEIAETRFEVAQVESLRYRQRVELLEREL--QELEDSLNAEREKVQVTAKTMAQHEELMKKTETMNVVMETNK 1277
Cdd:pfam02463 404 EKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIelKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQ 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1278 MLREE--KERLEQDLQQMQAKVRKLELDILPLQEANAELSEKSGMLQAEKKLLEEDVKRWKARNQHLVSQQKDPDTEEYR 1355
Cdd:pfam02463 484 EQLELllSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEER 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1356 KLLSEKEVHTKRIQQLTEEIGRLKAEIARSNASLTNNQNLIQSLKEDLNKVRTEKETIQKdLDAKIIDIQEKVKTITQVK 1435
Cdd:pfam02463 564 QKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAK-VVEGILKDTELTKLKESAK 642
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1436 KIGRRYKTQYEELKAQQDKVmETSAQSSGDHQEQHvsvqEMQELKETLNQAETKSKSLESQVENLQKTLSEKETEARNLQ 1515
Cdd:pfam02463 643 AKESGLRKGVSLEEGLAEKS-EVKASLSELTKELL----EIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKL 717
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1516 EQTVQLQSELSRL-------RQDLQDRTTQEEQLRQQITEKEEKTRKAIVAAKSKIAHLAGVKDQLTKENEELKQRNGAL 1588
Cdd:pfam02463 718 EAEELLADRVQEAqdkineeLKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLK 797
|
650 660 670 680
....*....|....*....|....*....|....*....|..
gi 633226 1589 DQQKDELDVRITALKSQYEGRISRLERELREHQERHLEQRDE 1630
Cdd:pfam02463 798 AQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELA 839
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
33-1049 |
5.07e-06 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 52.36 E-value: 5.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 33 QSEIDGLKGRHEKFKVESEQQYFEIEKRLSHSQERLVNETRECQSLRLELEKLNnqLKALTEKNKEL------------- 99
Cdd:TIGR01612 670 EDDIDALYNELSSIVKENAIDNTEDKAKLDDLKSKIDKEYDKIQNMETATVELH--LSNIENKKNELldiiveikkhihg 747
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 100 EIAQDRNIAIQSqFTRTKEELEAEKRDLIRTNERLSQELEYLTEDVKRLNEKLKESNTTKGELQlkldelQASDVSVKYR 179
Cdd:TIGR01612 748 EINKDLNKILED-FKNKEKELSNKINDYAKEKDELNKYKSKISEIKNHYNDQINIDNIKDEDAK------QNYDKSKEYI 820
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 180 EKRLEQEKELLHSQNtwlntELKTKTDELLAlgreKGNEILelkcNLENK-KEEVSRLEEQMNGL--KTSNEHLQKHVED 256
Cdd:TIGR01612 821 KTISIKEDEIFKIIN-----EMKFMKDDFLN----KVDKFI----NFENNcKEKIDSEHEQFAELtnKIKAEISDDKLND 887
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 257 LLTKLKEAK----EQQASMEEKFHN-----ELNAHIKLSnlyKSAADDSEAKSNELTRAVEELHKLLKEAGEANKaiqdh 327
Cdd:TIGR01612 888 YEKKFNDSKslinEINKSIEEEYQNintlkKVDEYIKIC---ENTKESIEKFHNKQNILKEILNKNIDTIKESNL----- 959
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 328 lleVEQS-KDQMEKEMLEKIGRLEKELENA---------NDLL--------SATKRKGAILSEEELAAMSPTAAAVAKIV 389
Cdd:TIGR01612 960 ---IEKSyKDKFDNTLIDKINELDKAFKDAslndyeaknNELIkyfndlkaNLGKNKENMLYHQFDEKEKATNDIEQKIE 1036
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 390 K-----PGMKL---TELYNAYVEtqdqllLEKLENKRINKYLDEIVKEVEakapilkrqreeyeraqkavasLSVKLEQA 461
Cdd:TIGR01612 1037 DankniPNIEIaihTSIYNIIDE------IEKEIGKNIELLNKEILEEAE----------------------INITNFNE 1088
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 462 MKEIQRLQEDTDKANKQSSVLERDNRRMEIQVKDLSQQIRVLLMELEEARGNHVIRDEEVSSADISSssEVISQHLVSYR 541
Cdd:TIGR01612 1089 IKEKLKHYNFDDFGKEENIKYADEINKIKDDIKNLDQKIDHHIKALEEIKKKSENYIDEIKAQINDL--EDVADKAISND 1166
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 542 NIEELQQQNQRLLVALrelgetREREEQETTSSKITELQLKLESALTELEQLRKSRQHQMQLVDSIVRQRDMYRILLSQT 621
Cdd:TIGR01612 1167 DPEEIEKKIENIVTKI------DKKKNIYDEIKKLLNEIAEIEKDKTSLEEVKGINLSYGKNLGKLFLEKIDEEKKKSEH 1240
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 622 TGVAIPLHASSLDDVSLASTPKRPSTSQTVSTPAPVPVIESTEA------IEAKAALKQLQEIFENYKK--EKAENEKIQ 693
Cdd:TIGR01612 1241 MIKAMEAYIEDLDEIKEKSPEIENEMGIEMDIKAEMETFNISHDddkdhhIISKKHDENISDIREKSLKiiEDFSEESDI 1320
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 694 NEQLEKLQEQVTDLRSQNTKISTQLDFASKRYEMLQ--------DNVEGYRREItslHERNQKLTATTQKQEQIINTMTQ 765
Cdd:TIGR01612 1321 NDIKKELQKNLLDAQKHNSDINLYLNEIANIYNILKlnkikkiiDEVKEYTKEI---EENNKNIKDELDKSEKLIKKIKD 1397
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 766 DLrganeKLAVAEVRAENLKKEKEMLKLSEvRLSQQRESLLAEQRGQNLLLTNlqtiqgilERSETETKQRLSSQIEKLE 845
Cdd:TIGR01612 1398 DI-----NLEECKSKIESTLDDKDIDECIK-KIKELKNHILSEESNIDTYFKN--------ADENNENVLLLFKNIEMAD 1463
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 846 HEISHLKKKLENEVEQRHTLTRNLDVQLLDTKRQLDTETNLHLN----TKELLKNAQKEIATLKQHLSNMEVQVA-SQSS 920
Cdd:TIGR01612 1464 NKSQHILKIKKDNATNDHDFNINELKEHIDKSKGCKDEADKNAKaiekNKELFEQYKKDVTELLNKYSALAIKNKfAKTK 1543
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 921 QRTGKGQPSNKEDVDDLVSQLRQTEEQVNDLKERLKT----STSNVEQYQAMV---TSLEESLNKEKQVTEeVRKNIEVR 993
Cdd:TIGR01612 1544 KDSEIIIKEIKDAHKKFILEAEKSEQKIKEIKKEKFRieddAAKNDKSNKAAIdiqLSLENFENKFLKISD-IKKKINDC 1622
|
1050 1060 1070 1080 1090 1100 1110
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 994 LKESAEFQTQL--------EKKLMEVEKEKQELQD------DKRRAIESMEQQLSELKKTLSSVQNEVQE 1049
Cdd:TIGR01612 1623 LKETESIEKKIssfsidsqDTELKENGDNLNSLQEfleslkDQKKNIEDKKKELDELDSEIEKIEIDVDQ 1692
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1-474 |
6.26e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.86 E-value: 6.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1 MAAVLQQVLERTELNKLPKSVQNKLEKFLADQQSEIDGLKGRHEKFkvesEQQYFEIEKRLSHSQERLVNETRECQSLRL 80
Cdd:COG1196 339 LEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEEL----AEELLEALRAAAELAAQLEELEEAEEALLE 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 81 ELEKLNNQLKALTEKNKELEIAQDRNIAIQSQFTRTKEELEAEKRDLIRTNERLSQELEYLTEDVKRLNEKLKESNTTKG 160
Cdd:COG1196 415 RLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLL 494
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 161 ELQLKLDELQASDVSVKYREKRLEQEK--ELLHSQNTWLNTELKTKTDELLALGREKGNEILE--LKCNLENKKEEVSRL 236
Cdd:COG1196 495 LLLEAEADYEGFLEGVKAALLLAGLRGlaGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEvaAAAIEYLKAAKAGRA 574
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 237 E----EQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKFHNELNAHIKLSNLYKSAADDSEAKSNELTRAVEELHK 312
Cdd:COG1196 575 TflplDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGE 654
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 313 LLKEAGEANKAIQDHLLEVEQSKDQMEKEMLEKIGRLEKELENANDLLSATKRKGAILSEEELAAMSPTAAAVAKIVKPG 392
Cdd:COG1196 655 GGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAER 734
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 393 MKLTELYNAYVETQDQLLLEKLEnkrinkyLDEIVKEVEAKAPILKRQR-----------EEYERAQKAVASLSVK---L 458
Cdd:COG1196 735 EELLEELLEEEELLEEEALEELP-------EPPDLEELERELERLEREIealgpvnllaiEEYEELEERYDFLSEQredL 807
|
490
....*....|....*.
gi 633226 459 EQAMKEIQRLQEDTDK 474
Cdd:COG1196 808 EEARETLEEAIEEIDR 823
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
408-865 |
6.66e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 51.31 E-value: 6.66e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 408 QLLLEKLENK---------RINKYLDEIVKEVEAKAPILKRQREEYERAQKAVASLSVKLEQAMKEIQRLQEDTDKANKQ 478
Cdd:COG4717 45 AMLLERLEKEadelfkpqgRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKL 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 479 SSVLERDNRRMEI--QVKDLSQQIRVLLMELEEargnhvirdeevssadissssevISQHLVSYRNIEELQQQNQRLLVA 556
Cdd:COG4717 125 LQLLPLYQELEALeaELAELPERLEELEERLEE-----------------------LRELEEELEELEAELAELQEELEE 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 557 LRELGETREREEQETTSSKITELQLKLESALTELEQLRKSRQHQMQLVDSIVRQ----------RDMYRILLSQTTGVAI 626
Cdd:COG4717 182 LLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENEleaaaleerlKEARLLLLIAAALLAL 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 627 PLHASSLDDVSLASTPKR------PSTSQTVSTPAPVPVIESTEAIEAKAALKQL-QEIFENYKKEKAENEKIQNEQLEK 699
Cdd:COG4717 262 LGLGGSLLSLILTIAGVLflvlglLALLFLLLAREKASLGKEAEELQALPALEELeEEELEELLAALGLPPDLSPEELLE 341
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 700 LQEQVTDLRSQNTKIST------QLDFASKRYEMLQDNVEGYRREITSLHERNQKLTATTQKQEQIINTMTQDLRGANEK 773
Cdd:COG4717 342 LLDRIEELQELLREAEEleeelqLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEEL 421
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 774 LAVAEvrAENLKKEKEMLKLSEVRLSQQRESLLAEqrgqnllltnLQTIQGILERSETETkqrlssQIEKLEHEISHLKK 853
Cdd:COG4717 422 LEALD--EEELEEELEELEEELEELEEELEELREE----------LAELEAELEQLEEDG------ELAELLQELEELKA 483
|
490
....*....|..
gi 633226 854 KLENEVEQRHTL 865
Cdd:COG4717 484 ELRELAEEWAAL 495
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
32-495 |
6.96e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 51.65 E-value: 6.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 32 QQSEIDGLKGRHEKFKVESEQQYFEIEKRLSHSQERLVNETRECQSLRLELEKLNNQLKALTE--KNKELEIAQDRNIAI 109
Cdd:pfam05483 336 QMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKfkNNKEVELEELKKILA 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 110 QsqftrtKEELEAEKRDLirtnERLSQELEYLTEDVKRLNEKlKESNTTKGELQLKLDELQASDVSVKYREKRLEQEKEL 189
Cdd:pfam05483 416 E------DEKLLDEKKQF----EKIAEELKGKEQELIFLLQA-REKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEK 484
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 190 LHsqntwlNTELKTKTDELL----ALGREKGNEILELKCNLE---NKKEEVSRLEEQMNGLKTSNEHLQKHVEDLLTKLK 262
Cdd:pfam05483 485 LK------NIELTAHCDKLLlenkELTQEASDMTLELKKHQEdiiNCKKQEERMLKQIENLEEKEMNLRDELESVREEFI 558
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 263 EAKEQQASMEEKFHNELNAHIKLSNLYKSAADDSEAKSNELTRAVEELHKLLKEAGEANKAIQDHllEVEQSKDQMEKEM 342
Cdd:pfam05483 559 QKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKK--GSAENKQLNAYEI 636
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 343 leKIGRLEKELENAN----DLLSATKRKGAI--LSEEELAAMSPTAAAVAKIVKPGMKLTELYNAYVETQDQLLLEKLEN 416
Cdd:pfam05483 637 --KVNKLELELASAKqkfeEIIDNYQKEIEDkkISEEKLLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEMVALMEKHKH 714
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 633226 417 KrinkyLDEIVKEVEAKAPILKRQREEYERAQkavASLSVKLEQAMKEIQRLQEDTDKANKQSSVLERDNRRMEIQVKD 495
Cdd:pfam05483 715 Q-----YDKIIEERDSELGLYKNKEQEQSSAK---AALEIELSNIKAELLSLKKQLEIEKEEKEKLKMEAKENTAILKD 785
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1475-1641 |
7.15e-06 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 49.54 E-value: 7.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1475 EMQELKETLNQAETKSKSLESQVENLQKTLSEKETEARNLQEQTVQLQSELSRLRQDLQDRTTQEEQLRQQITEKeeKTR 1554
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNV--RNN 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1555 KAIVAAKSKIAHLAGVKDQLTKENEELKQRNGALDQQKDELDVRITALKSQYEGRISRLERELREHQERHLEQRDEPQEP 1634
Cdd:COG1579 89 KEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREEL 168
|
....*..
gi 633226 1635 SNKVPEQ 1641
Cdd:COG1579 169 AAKIPPE 175
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
618-1426 |
7.17e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 51.66 E-value: 7.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 618 LSQTTGVAIPLHASSLDDVSLASTPKRPSTSQTVSTPAPVPVIESTEAIEAKAALKQLQEIFENYKKEKAENEKIQNEQL 697
Cdd:pfam15921 19 ITSNRGSSSPFFVSSIRGTIIENTSSTGTFTQIPIFPKYEVELDSPRKIIAYPGKEHIERVLEEYSHQVKDLQRRLNESN 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 698 EKLQEQVTDLRSQNTKISTQLdfasKRYEMLQDNVEGYRREitslhernqkltaTTQKQEQIINTMTQdlrganeklAVA 777
Cdd:pfam15921 99 ELHEKQKFYLRQSVIDLQTKL----QEMQMERDAMADIRRR-------------ESQSQEDLRNQLQN---------TVH 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 778 EVRAENLKKEkEMLKLSEVRLSQQRESLLAEQrgqnlllTNLQTIQGILERSETETKQRL------------------SS 839
Cdd:pfam15921 153 ELEAAKCLKE-DMLEDSNTQIEQLRKMMLSHE-------GVLQEIRSILVDFEEASGKKIyehdsmstmhfrslgsaiSK 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 840 QIEKLEHEISHLKKKL---ENEVEQRHTLTRNlDVQLLDTKRQLDTEtnlhlntkELLKNAQKEIATLKQHLSNMEVQVA 916
Cdd:pfam15921 225 ILRELDTEISYLKGRIfpvEDQLEALKSESQN-KIELLLQQHQDRIE--------QLISEHEVEITGLTEKASSARSQAN 295
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 917 S-QSSQRTGKGQPSNKEDVddLVSQLRQTEEQVNDLKERLKTSTsnvEQYQAMVTSLEESLNKEKQVTEEVRKNIEVRLK 995
Cdd:pfam15921 296 SiQSQLEIIQEQARNQNSM--YMRQLSDLESTVSQLRSELREAK---RMYEDKIEELEKQLVLANSELTEARTERDQFSQ 370
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 996 ESAEFQTQLEKKLMEVEKEKQELQDDKRRAIESMEQQ------LSELKKTLSSVQNEVQ--EALQRAstalsneqqARRD 1067
Cdd:pfam15921 371 ESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDtgnsitIDHLRRELDDRNMEVQrlEALLKA---------MKSE 441
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1068 CQEQAKIAVEAQNKYERELMLHAADVEALQAAKEQVSKMASVRQHLEETTQKAESQLLECKASWEERERMLK---DEVSK 1144
Cdd:pfam15921 442 CQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEatnAEITK 521
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1145 CVCRCeDLEKQ---------NRLLHDQIE----KLS----DKVVASVKEGVQGPLNVsLSEEGKSQEQILeiLRFIRREK 1207
Cdd:pfam15921 522 LRSRV-DLKLQelqhlknegDHLRNVQTEcealKLQmaekDKVIEILRQQIENMTQL-VGQHGRTAGAMQ--VEKAQLEK 597
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1208 EIAETRFEVAQVESLR------YRQRVELLERELQELEDSLNAEREKVQVTAKTMAQHEELMKKTET----MNVVMETNK 1277
Cdd:pfam15921 598 EINDRRLELQEFKILKdkkdakIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTsrneLNSLSEDYE 677
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1278 MLR-------EEKE----RLEQDLQQMQAKVRKLELDILPLQEANA-----------ELSEKSGM---LQAEKKLLEEDV 1332
Cdd:pfam15921 678 VLKrnfrnksEEMEtttnKLKMQLKSAQSELEQTRNTLKSMEGSDGhamkvamgmqkQITAKRGQidaLQSKIQFLEEAM 757
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1333 ------KRWKARNQHLVSQQKDPDTEEYRKLLSEKEVHTKRIQQLTEEIGRLKAEIARSNASLTNNQNLIQslkedlnkv 1406
Cdd:pfam15921 758 tnankeKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQ--------- 828
|
890 900
....*....|....*....|
gi 633226 1407 RTEKETIQKDLDaKIIDIQE 1426
Cdd:pfam15921 829 RQEQESVRLKLQ-HTLDVKE 847
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
110-511 |
7.72e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 51.58 E-value: 7.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 110 QSQFTRTKEELEA-EKRDLIRTNERLSQELEYLTEDVKRLNEKLKESNTTKGELQL----------KLDELQA------S 172
Cdd:PRK02224 186 RGSLDQLKAQIEEkEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEvleeheerreELETLEAeiedlrE 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 173 DVSVKYREKrlEQEKELLHSQNTWLNtELKTKTDELLA---LGREKGNEILELKCNLENKKEEV-SRLEEQMNGLKTSN- 247
Cdd:PRK02224 266 TIAETERER--EELAEEVRDLRERLE-ELEEERDDLLAeagLDDADAEAVEARREELEDRDEELrDRLEECRVAAQAHNe 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 248 --EHLQKHVEDLLTKLKEAKEQQASMEEKFHNElnahiklsnlyKSAADDSEAKSNELTRAVEELHKLLKEAGEANKAIQ 325
Cdd:PRK02224 343 eaESLREDADDLEERAEELREEAAELESELEEA-----------REAVEDRREEIEELEEEIEELRERFGDAPVDLGNAE 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 326 DHLLEVEQSKD---QMEKEMLEKIGRLEKELENANDLLSATK--------------------RKGAILSEEELAAMSPTA 382
Cdd:PRK02224 412 DFLEELREERDelrEREAELEATLRTARERVEEAEALLEAGKcpecgqpvegsphvetieedRERVEELEAELEDLEEEV 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 383 AAVAKIVKPGMKLtelynayVETQDQllLEKLENKRinkylDEIVKEVEAKAPILKRQREEYERAQKAVASLSVKLEQAM 462
Cdd:PRK02224 492 EEVEERLERAEDL-------VEAEDR--IERLEERR-----EDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKR 557
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 633226 463 KEIQRLQEDTDKANKQSSVLERDNRRMEIQVKDLsQQIRVLLMELEEAR 511
Cdd:PRK02224 558 EAAAEAEEEAEEAREEVAELNSKLAELKERIESL-ERIRTLLAAIADAE 605
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
70-370 |
7.94e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.61 E-value: 7.94e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 70 NETRECQSLRLELEKLnnqlkALTEKNKELEIAQDRNIAIQSQFtrtkEELEAEKRDLIRTNERLSQELEYLTEDVKRLN 149
Cdd:TIGR02169 208 EKAERYQALLKEKREY-----EGYELLKEKEALERQKEAIERQL----ASLEEELEKLTEEISELEKRLEEIEQLLEELN 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 150 EKLKE-SNTTKGELQLKLDELQASDVSVKYREKRLEQEKEllhsqntwlntELKTKTDELLALGREKGNEILELKCNLEN 228
Cdd:TIGR02169 279 KKIKDlGEEEQLRVKEKIGELEAEIASLERSIAEKERELE-----------DAEERLAKLEAEIDKLLAEIEELEREIEE 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 229 KKEEVSRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKF------HNELNAHI-KLSNLYKSAADDSEAKSN 301
Cdd:TIGR02169 348 ERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLeklkreINELKRELdRLQEELQRLSEELADLNA 427
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 633226 302 ELTRAVEELHKLLKEAGEANKAIQDHLLEVEQSKDQMEKEMlEKIGRLEKELENANDLLSATKRKGAIL 370
Cdd:TIGR02169 428 AIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYE-QELYDLKEEYDRVEKELSKLQRELAEA 495
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
70-509 |
7.98e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 51.17 E-value: 7.98e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 70 NETREcQSLRLELEKLNNQLKALTEKNKELEIAQDRNIAIQSQFTRTKEELEAEKRDLIRTNERLSQELEYLTEDVKRLN 149
Cdd:TIGR04523 31 QDTEE-KQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKIN 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 150 EKLKESNTTKGELQLKLDELqasdvsvkyrEKRLEQEKELLhsqnTWLNTELKTKTDELLALGrEKGNEILELKCNLENK 229
Cdd:TIGR04523 110 SEIKNDKEQKNKLEVELNKL----------EKQKKENKKNI----DKFLTEIKKKEKELEKLN-NKYNDLKKQKEELENE 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 230 KEEVSR--LEEQMNGLKTSNEHLQKHVedLLTKLKEAKEQQASMEEKFHNELNAHIKLSNLYKSAADDSEAKSNELTRAV 307
Cdd:TIGR04523 175 LNLLEKekLNIQKNIDKIKNKLLKLEL--LLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQ 252
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 308 EELHKLLKEAGEANKAIQDHLLEVEQSKDQMeKEMLEKIGRLEKELENAN-------------DLLSATKRKGAILSE-- 372
Cdd:TIGR04523 253 TQLNQLKDEQNKIKKQLSEKQKELEQNNKKI-KELEKQLNQLKSEISDLNnqkeqdwnkelksELKNQEKKLEEIQNQis 331
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 373 EELAAMSPTAAAVAKIVKpgmKLTELYNAYVETQDQL-----LLEKLeNKRINKYLDEIvKEVEAKAPILKRQREEYERA 447
Cdd:TIGR04523 332 QNNKIISQLNEQISQLKK---ELTNSESENSEKQRELeekqnEIEKL-KKENQSYKQEI-KNLESQINDLESKIQNQEKL 406
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 633226 448 ----QKAVASLSVKLEQAMKEIQRLQEDTDKANKQSSVLERDNRRMEIQVKDLSQQIRVLLMELEE 509
Cdd:TIGR04523 407 nqqkDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKV 472
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
167-501 |
8.16e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.60 E-value: 8.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 167 DELQASDVSVKYREKRLEQEKELLHSQNTWLNTEL---KTKTDELLALGREKGNEILELKCNLENKKEEVSRLEEQMNGL 243
Cdd:TIGR02168 666 AKTNSSILERRREIEELEEKIEELEEKIAELEKALaelRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQL 745
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 244 KTSNEHLQKHVEDLLTKLKEAKEQQASMEEKFH------NELNAHI-KLSNLYKSAADDSEAKSNELTRAVEELHKL--- 313
Cdd:TIGR02168 746 EERIAQLSKELTELEAEIEELEERLEEAEEELAeaeaeiEELEAQIeQLKEELKALREALDELRAELTLLNEEAANLrer 825
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 314 LKEAGEANKAIQDHLLEVEQSKDQMEKEMLEKIGRLEKELENANDLLSATKRKGAILSEEELAAMSPTAA---AVAKIVK 390
Cdd:TIGR02168 826 LESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSEleeLSEELRE 905
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 391 PGMKLTELYNAYVETQD-----QLLLEKLENKRINKY----------LDEIVKEVEAKAPILKRQREEYERAQKAVASLS 455
Cdd:TIGR02168 906 LESKRSELRRELEELREklaqlELRLEGLEVRIDNLQerlseeysltLEEAEALENKIEDDEEEARRRLKRLENKIKELG 985
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 633226 456 VKLEQAMKEIQRLQEDTDKANKQS-----------SVLERDNRRMEIQVKDLSQQIR 501
Cdd:TIGR02168 986 PVNLAAIEEYEELKERYDFLTAQKedlteaketleEAIEEIDREARERFKDTFDQVN 1042
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
1274-1565 |
8.62e-06 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 49.91 E-value: 8.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1274 ETNKMLREEKERLEQDLQQMQAKVRKLELDilpLQEANAELSEksgmLQAEKKLLEEDVKRWKARNQHLVsQQKDPDTEE 1353
Cdd:COG1340 1 SKTDELSSSLEELEEKIEELREEIEELKEK---RDELNEELKE----LAEKRDELNAQVKELREEAQELR-EKRDELNEK 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1354 YRKLLSEKEVHTKRIQQLTEEIGRLKAEIARSNASltnnqnliqslKEDLNKVRTEKETIQKDLDAKIIDIQEKVKTITQ 1433
Cdd:COG1340 73 VKELKEERDELNEKLNELREELDELRKELAELNKA-----------GGSIDKLRKEIERLEWRQQTEVLSPEEEKELVEK 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1434 VKKIGRRYKTQYEELKaQQDKVMETSAQSSGDHQEQHVSVQEMQELKETLNQAETKSKSLESQVENLQKtlseketEARN 1513
Cdd:COG1340 142 IKELEKELEKAKKALE-KNEKLKELRAELKELRKEAEEIHKKIKELAEEAQELHEEMIELYKEADELRK-------EADE 213
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 633226 1514 LQEQTVQLQSELSRLRQDLQDRTTQEEQLRQQITEKEEKTRKAIVAAKSKIA 1565
Cdd:COG1340 214 LHKEIVEAQEKADELHEEIIELQKELRELRKELKKLRKKQRALKREKEKEEL 265
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
662-870 |
1.05e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.15 E-value: 1.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 662 STEAIEAKAALKQLQEIFENYKKEKAENEKIQNE---QLEKLQEQVTDLRSQNTKISTQLDFASKRYEMLQDNVEGYRRE 738
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKAllkQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 739 ITSLHERNQKLTATTQKQEQIINTM----TQDLRGANEKLAVAEVRAENLKKEKEMLKLSEVRLSQQRESLLAEQRGQNL 814
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLAlllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEA 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 633226 815 LLTNLQTIQGILERSETETKQRLSsqieKLEHEISHLKKKLENEVEQRHTLTRNLD 870
Cdd:COG4942 179 LLAELEEERAALEALKAERQKLLA----RLEKELAELAAELAELQQEAEELEALIA 230
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
145-595 |
1.22e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.54 E-value: 1.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 145 VKRLNEKLKESNTTKGEL-QLKLDELQASDVSVKYREKRLEQEKELLHSQNTwLNTELKTKTDELLALGREKGNeiLELK 223
Cdd:COG4717 48 LERLEKEADELFKPQGRKpELNLKELKELEEELKEAEEKEEEYAELQEELEE-LEEELEELEAELEELREELEK--LEKL 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 224 CNLENKKEEVSRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKfHNELNAHIKLSNLYKsaaddsEAKSNEL 303
Cdd:COG4717 125 LQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAEL-QEELEELLEQLSLAT------EEELQDL 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 304 TRAVEELHKLLKEAGEANKAIQDHLLEVEQSKDQMEKEMlEKIGRLEKELENANDLLSATKRKGAILSEEELAAMSPTAA 383
Cdd:COG4717 198 AEELEELQQRLAELEEELEEAQEELEELEEELEQLENEL-EAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIA 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 384 AVAKIV---------KPGMKLTELYNAYVETQDQLLLEKLENKRINKYLDEIVKEVEAKAPILKRQREEYERAQKAVASL 454
Cdd:COG4717 277 GVLFLVlgllallflLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREA 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 455 SVKLEQAmkEIQRLQEDTDKANKQSSVLERDNRRMEIQVKDLSQQIRVLLMELEEARGNHvirDEEVSSADISSSSEVIS 534
Cdd:COG4717 357 EELEEEL--QLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEEL---LGELEELLEALDEEELE 431
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 633226 535 QHLVSYRniEELQQQNQRLLVALRELGETREREEQETTSSKITELQLKLESALTELEQLRK 595
Cdd:COG4717 432 EELEELE--EELEELEEELEELREELAELEAELEQLEEDGELAELLQELEELKAELRELAE 490
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1240-1633 |
1.36e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 50.49 E-value: 1.36e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1240 DSLNAEREKVQVTAKTMAQHEELMKktETMNVVMETNKMLREEKErleqdlQQMQAKVRKLELDILPLQEANAELSEKSG 1319
Cdd:pfam05483 292 DHLTKELEDIKMSLQRSMSTQKALE--EDLQIATKTICQLTEEKE------AQMEELNKAKAAHSFVVTEFEATTCSLEE 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1320 MLQAEKKLLEEDVKRWKARNQHLvsQQKDPDTEEYRKLLSEKEVHTKRIQQLTEEIGRLKAEIARSNASLTNNQNLIQSL 1399
Cdd:pfam05483 364 LLRTEQQRLEKNEDQLKIITMEL--QKKSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQEL 441
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1400 KEDLNKVRTEKETIQKDLDAKIIDIQEKVKTITQVKKIGRRYKTQYEELKAQQDKVMETSAQSSgdhQEQHVSVQEMQEL 1479
Cdd:pfam05483 442 IFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELT---QEASDMTLELKKH 518
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1480 KETLNQAETKSKSLESQVENLQktlsEKETEARNLQEQtvqLQSELSRLRQDLQDRTTQEEQLRQQITEKEEKTRKAIVA 1559
Cdd:pfam05483 519 QEDIINCKKQEERMLKQIENLE----EKEMNLRDELES---VREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKI 591
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 633226 1560 AKSKIAHLAGVKDQLTKENEELKQRNGALDQQKDELDVRITAlksqYEGRISRLERELREHQERHLEQRDEPQE 1633
Cdd:pfam05483 592 LENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNA----YEIKVNKLELELASAKQKFEEIIDNYQK 661
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
815-1561 |
1.52e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 50.40 E-value: 1.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 815 LLTNLQTIQGILERSETETKQRLSSQIEKLEHeishlKKKLENEVEQRHTLTRNLDVQLLDTKRQLDTETNLHLNTKELL 894
Cdd:TIGR04523 38 LEKKLKTIKNELKNKEKELKNLDKNLNKDEEK-----INNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEI 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 895 KNAQKEIATLKQHLSNMEVQVAsqssqrtgkgqpSNKEDVDDLVSQLRQTEEQVNDLKERLKTSTSNVEQYQAMVTSLEE 974
Cdd:TIGR04523 113 KNDKEQKNKLEVELNKLEKQKK------------ENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEK 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 975 SLNKEKQVTEEVRKNIEVR------LKESAEFQTQLEKKLMEVEKEKQELQDDkrraIESMEQQLSELKKTLSSVQNEVQ 1048
Cdd:TIGR04523 181 EKLNIQKNIDKIKNKLLKLelllsnLKKKIQKNKSLESQISELKKQNNQLKDN----IEKKQQEINEKTTEISNTQTQLN 256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1049 EalqrastaLSNEQQARRDCQEQAKIAVEAQNKYERELMlhaadvEALQAAKEQVSKMASVRQhlEETTQKAESQLleck 1128
Cdd:TIGR04523 257 Q--------LKDEQNKIKKQLSEKQKELEQNNKKIKELE------KQLNQLKSEISDLNNQKE--QDWNKELKSEL---- 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1129 ASWEERERMLKDEVSKCvcrcedlEKQNRLLHDQIEKLSDKVVASVKEgvqgplNVSLSEEGKSQEQILEILrfirrEKE 1208
Cdd:TIGR04523 317 KNQEKKLEEIQNQISQN-------NKIISQLNEQISQLKKELTNSESE------NSEKQRELEEKQNEIEKL-----KKE 378
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1209 IAETRFEVAQVESlryrqrvellerelqeledSLNAEREKVQVTAKTMAQHEELMKKtetmnvvmetnkmLREEKERLEQ 1288
Cdd:TIGR04523 379 NQSYKQEIKNLES-------------------QINDLESKIQNQEKLNQQKDEQIKK-------------LQQEKELLEK 426
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1289 DLQQMQAKVRKLELDILPLQEANAELSEKSGMLQAEKKLLEEDVKRWKArnqhlvsqqkdpdteEYRKLLSEKEVHTKRI 1368
Cdd:TIGR04523 427 EIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSR---------------SINKIKQNLEQKQKEL 491
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1369 QQLTEEIGRLKAEIARSNASLTNNQNLIQSLKEDLNKVRTEKETIQKdldaKIIDIQEKVKTITQVKKigrryKTQYEEL 1448
Cdd:TIGR04523 492 KSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKES----KISDLEDELNKDDFELK-----KENLEKE 562
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1449 KAQQDKVMETSaqssgdHQEQHVSVQEMQELKETLNQAETKSKSLESQVENLQKTLSEKETEARNLQEQTVQLQSELSRL 1528
Cdd:TIGR04523 563 IDEKNKEIEEL------KQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNI 636
|
730 740 750
....*....|....*....|....*....|...
gi 633226 1529 RQDLQDRTTQEEQLRQQITEKEEKTRKAIVAAK 1561
Cdd:TIGR04523 637 KSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIK 669
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
819-1299 |
1.68e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.42 E-value: 1.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 819 LQTIQGILERSET--ETKQRLSSQIEKLEHEISHLKKKLENEVEQRHTLTRNLDvQLLDTKRQLDTETNLHLNTKELLKN 896
Cdd:PRK02224 236 RDEADEVLEEHEErrEELETLEAEIEDLRETIAETEREREELAEEVRDLRERLE-ELEEERDDLLAEAGLDDADAEAVEA 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 897 AQKEIATLKQHLSNmEVQVASQSSQRTGKGQPSNKEDVDDLVSQLRQTEEQVNDLKERLKTSTSNVEQYQAMVTSLE--- 973
Cdd:PRK02224 315 RREELEDRDEELRD-RLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEeei 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 974 ESLNKEKQVTEEVRKNIEVRLKESAEFQTQLEKKLMEVEKEKQELQDDKRRA------------------------IESM 1029
Cdd:PRK02224 394 EELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAealleagkcpecgqpvegsphvetIEED 473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1030 EQQLSELKKTLSSV---QNEVQEALQRASTALSNEQQARRdCQEQAKIAVEAQNKYERELmlhAADVEALQAAKEQVSKM 1106
Cdd:PRK02224 474 RERVEELEAELEDLeeeVEEVEERLERAEDLVEAEDRIER-LEERREDLEELIAERRETI---EEKRERAEELRERAAEL 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1107 ASVRQHLEETTQKAESQLLECKasweERERMLKDEVSKCVCRCEDLEKQNRLLhDQIEKLSDKVvasvkegvqGPLNVSL 1186
Cdd:PRK02224 550 EAEAEEKREAAAEAEEEAEEAR----EEVAELNSKLAELKERIESLERIRTLL-AAIADAEDEI---------ERLREKR 615
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1187 SEEGKSQEQILEILRFIRREKEIAETRFEVAQVESLRY-RQRVELLERELQELEDSLNAEREKVQVTA----KTMAQHEE 1261
Cdd:PRK02224 616 EALAELNDERRERLAEKRERKRELEAEFDEARIEEAREdKERAEEYLEQVEEKLDELREERDDLQAEIgaveNELEELEE 695
|
490 500 510
....*....|....*....|....*....|....*...
gi 633226 1262 LMKKTETMNVVMETNKMLREEKERLEQDLQQMQAKVRK 1299
Cdd:PRK02224 696 LRERREALENRVEALEALYDEAEELESMYGDLRAELRQ 733
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
1313-1535 |
2.01e-05 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 49.63 E-value: 2.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1313 ELSEKSGMLQAEKKLLEEDVKrwkARNQHLVSQQKDPDTEEYRKllsekevhTKRIQQLTEEIGRLKAEIARSNASLTNN 1392
Cdd:PHA02562 178 ELNQQIQTLDMKIDHIQQQIK---TYNKNIEEQRKKNGENIARK--------QNKYDELVEEAKTIKAEIEELTDELLNL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1393 QNLIQSLKEDLNKVRTEKETIQKDLD--AKII--------------DIQEKVKTITQVKKIGRRYKTQYEELKAQQDKVM 1456
Cdd:PHA02562 247 VMDIEDPSAALNKLNTAAAKIKSKIEqfQKVIkmyekggvcptctqQISEGPDRITKIKDKLKELQHSLEKLDTAIDELE 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1457 ETSAQssgdHQEQHVSVQEMQELKETLNQA----ETKSKSLESQVENLQKTLSEKETEARNLQEQTVQLQSELSRLRQDL 1532
Cdd:PHA02562 327 EIMDE----FNEQSKKLLELKNKISTNKQSlitlVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEK 402
|
...
gi 633226 1533 QDR 1535
Cdd:PHA02562 403 YHR 405
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
143-596 |
2.08e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.06 E-value: 2.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 143 EDVKRLNEKLKESNTTKGELQLKLDELQASDVSVKYREKRLEQEKELLHSQNTWLNTELKTKTDELLALGREK------G 216
Cdd:PRK03918 158 DDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVkeleelK 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 217 NEILELKCNLENKKEEVSRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEE-----KFHNELNAHI-------- 283
Cdd:PRK03918 238 EEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEyiklsEFYEEYLDELreiekrls 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 284 KLSNLYK------SAADDSEAKSNELTRAVEELHKLLKEAGEANKAIQDHLLEVEQSKDQMEKEMLEKIGRLEKELENAN 357
Cdd:PRK03918 318 RLEEEINgieeriKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELE 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 358 --------DLLSATKRKGAILSEEE--LAAMSPTAAAVAKIVKPGMKLTE-----LYNAYVETQDQLLLEKLENKRINKY 422
Cdd:PRK03918 398 kakeeieeEISKITARIGELKKEIKelKKAIEELKKAKGKCPVCGRELTEehrkeLLEEYTAELKRIEKELKEIEEKERK 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 423 LDEIVKEVE---AKAPILKRQREEYERAQKAVASLSV----KLEQAMKEIQRLQEDTDKANKQSSVLERDNRRMEiQVKD 495
Cdd:PRK03918 478 LRKELRELEkvlKKESELIKLKELAEQLKELEEKLKKynleELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLE-ELKK 556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 496 LSQQIRVLLMELEEARGNHVIRDEEVSSADISSSSEVISQHLVSYRNIEELQQQNQRLLVALRELgeTREREEQETTSSK 575
Cdd:PRK03918 557 KLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKEL--KKLEEELDKAFEE 634
|
490 500
....*....|....*....|.
gi 633226 576 ITELQLKLESALTELEQLRKS 596
Cdd:PRK03918 635 LAETEKRLEELRKELEELEKK 655
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
825-1059 |
2.09e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.91 E-value: 2.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 825 ILERSETETK-QRLSSQIEKLE--HEIshlkkkLENEVEQRHTLTR--------NLDVQLLDTKRQLDTETNLHLNTKEL 893
Cdd:COG4913 217 MLEEPDTFEAaDALVEHFDDLEraHEA------LEDAREQIELLEPirelaeryAAARERLAELEYLRAALRLWFAQRRL 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 894 LKnAQKEIATLKQHLSNMEVQVASQSSQRTgkgqpSNKEDVDDLVSQLRQT--------EEQVNDLKERLKTSTSNVEQY 965
Cdd:COG4913 291 EL-LEAELEELRAELARLEAELERLEARLD-----ALREELDELEAQIRGNggdrleqlEREIERLERELEERERRRARL 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 966 QAMVTSLEESLNKEKQVTEEVRKNIEVRLKESAEFQTQLEKKLMEVEKEKQELQDDKRRAiesmEQQLSELKKTLSSVQN 1045
Cdd:COG4913 365 EALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELREL----EAEIASLERRKSNIPA 440
|
250
....*....|....
gi 633226 1046 EVQEALQRASTALS 1059
Cdd:COG4913 441 RLLALRDALAEALG 454
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
724-1337 |
2.19e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.06 E-value: 2.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 724 RYEMLQDNVEGYRREITSLHERNQKLTATTQKQEQIINTMTQDLRGANEKLAVAEVRAENLKKEKEMLKLSEVRLSQQRE 803
Cdd:PRK03918 159 DYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKE 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 804 SLLAEQRGQNLLLTNLqtiqgileRSETETKQRLSSQIEKLEHEISHLKKKLE--NEVEQRHTLTRNLdvqlldtkrqld 881
Cdd:PRK03918 239 EIEELEKELESLEGSK--------RKLEEKIRELEERIEELKKEIEELEEKVKelKELKEKAEEYIKL------------ 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 882 teTNLHLNTKELLKNAQKEIATLKQHLSNMEVQVasqssqrtgkgqpsnkEDVDDLVSQLRQTEEQVNDLKERLKTSTSN 961
Cdd:PRK03918 299 --SEFYEEYLDELREIEKRLSRLEEEINGIEERI----------------KELEEKEERLEELKKKLKELEKRLEELEER 360
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 962 VEQYQAMVTSLEESLNKEKQVTEEVRKNIEVRLKESAEFQTQLEKKLMEVEKEKQELQD---DKRRAIESMEQQ------ 1032
Cdd:PRK03918 361 HELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKeikELKKAIEELKKAkgkcpv 440
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1033 -------------LSELKKTLSSVQNEVQEALQRASTALSNEQQARRDCQEQAKIAVE---AQNKYERELMLHAADVEAL 1096
Cdd:PRK03918 441 cgrelteehrkelLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLkelAEQLKELEEKLKKYNLEEL 520
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1097 QAAKEQVSKmasvrqhLEETTQKAESQLLECKASWeERERMLKDEVSKCVCRCEDLEKQNRLLHDQIEKLSDKVVASVKE 1176
Cdd:PRK03918 521 EKKAEEYEK-------LKEKLIKLKGEIKSLKKEL-EKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEE 592
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1177 gvqgplnvSLSEEGKSQEQILEiLRFIRREKEIAETRFEVAQVESLRYRQRVELLERELQELEDSLNAEREKVQVtaktm 1256
Cdd:PRK03918 593 --------RLKELEPFYNEYLE-LKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSE----- 658
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1257 aqhEELMKKTETMNVVMETNKMLREEKERLEQDLQQMQAKVRKLELDILPLQEANAELsEKSGMLQAEKKLLEEDVKRWK 1336
Cdd:PRK03918 659 ---EEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKEL-EKLEKALERVEELREKVKKYK 734
|
.
gi 633226 1337 A 1337
Cdd:PRK03918 735 A 735
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1365-1630 |
2.58e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.91 E-value: 2.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1365 TKRIQQLTEEIGRLKAEIARSNASltnnqnlIQSLKEDLNKVRTEKETIQK--DLDAKIIDIQEKVKTITQVKKigrryk 1442
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEER-------LEALEAELDALQERREALQRlaEYSWDEIDVASAEREIAELEA------ 675
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1443 tQYEELKAQQDKVMETSAQSSGdhqeqhvSVQEMQELKETLNQAETKSKSLESQVENLQKTLSEKETEARNLQEQTVQLQ 1522
Cdd:COG4913 676 -ELERLDASSDDLAALEEQLEE-------LEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLEL 747
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1523 SEL--SRLRQDLQDRttQEEQLRQQITEKEEKTRKAIVAAKSKIAhlagvkDQLTKENEELKQRNGALDQQKDELDvrit 1600
Cdd:COG4913 748 RALleERFAAALGDA--VERELRENLEERIDALRARLNRAEEELE------RAMRAFNREWPAETADLDADLESLP---- 815
|
250 260 270
....*....|....*....|....*....|.
gi 633226 1601 alksQYEGRISRLERE-LREHQERHLEQRDE 1630
Cdd:COG4913 816 ----EYLALLDRLEEDgLPEYEERFKELLNE 842
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
929-1124 |
2.65e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.91 E-value: 2.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 929 SNKEDVDDLVSQLRQTEEQVNDLKERLktstsnvEQYQAMVTSLEESLNKEKQVTEEVRKNIEVRlkesaefqtQLEKKL 1008
Cdd:COG4913 607 DNRAKLAALEAELAELEEELAEAEERL-------EALEAELDALQERREALQRLAEYSWDEIDVA---------SAEREI 670
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1009 MEVEKEKQELQDDKRrAIESMEQQLSELKKTLSSVQNEVqEALQRASTALSNEQQARRDCQEQAKIAVEAQNKYERELML 1088
Cdd:COG4913 671 AELEAELERLDASSD-DLAALEEQLEELEAELEELEEEL-DELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELR 748
|
170 180 190
....*....|....*....|....*....|....*.
gi 633226 1089 HAADVEALQAAKEQVSKmaSVRQHLEETTQKAESQL 1124
Cdd:COG4913 749 ALLEERFAAALGDAVER--ELRENLEERIDALRARL 782
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
787-1046 |
3.17e-05 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 49.52 E-value: 3.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 787 EKEMLKLSEVRLS--QQRESLLAE----QRGQNLLLTNLqtiqgilerSETETKQRLSSQ-----------IEKLEHEIS 849
Cdd:PLN02939 141 EKNILLLNQARLQalEDLEKILTEkealQGKINILEMRL---------SETDARIKLAAQekihveileeqLEKLRNELL 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 850 HlkkKLENEVEQRHTLTRNLD------VQLLDTKRQLDTETNLHLNTKELLKNAQKEIATLKQHLSNMEVQ-VASQssqr 922
Cdd:PLN02939 212 I---RGATEGLCVHSLSKELDvlkeenMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKfIVAQ---- 284
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 923 tgkgqpsnkEDVDDLVS-QLRQTEEQVNDLKERLKTSTSNVEQYqAMVTSLEESLNKEKQVTEEVRKNIEVRlKESAEFQ 1001
Cdd:PLN02939 285 ---------EDVSKLSPlQYDCWWEKVENLQDLLDRATNQVEKA-ALVLDQNQDLRDKVDKLEASLKEANVS-KFSSYKV 353
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 633226 1002 TQLEKKLMEVEKEKQELQDDKRRAIESMEQQLSELKKTLSSVQNE 1046
Cdd:PLN02939 354 ELLQQKLKLLEERLQASDHEIHSYIQLYQESIKEFQDTLSKLKEE 398
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
84-373 |
3.40e-05 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 49.12 E-value: 3.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 84 KLNNQLKALTEKNKELEIAQDRNIAIQSQFTRTKEELEAEKRDLIRTNERLSQELEYLTEDVKRLNEKLKESNTTKGELQ 163
Cdd:pfam07888 35 RLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELS 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 164 LKLDELQASDVSVKYREKRLEQEKELLHSQNTWLNTELKTKTDELLALGREKGNEILE---LKCNLENKKEEVSRLEEQM 240
Cdd:pfam07888 115 EEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAErkqLQAKLQQTEEELRSLSKEF 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 241 NGLK-------TSNEHLQKHVEDLLTKLKEAKEQQASMEEkFHNELNAHIKLSNLYKSAAD----DSEAKSNELTRAVEE 309
Cdd:pfam07888 195 QELRnslaqrdTQVLQLQDTITTLTQKLTTAHRKEAENEA-LLEELRSLQERLNASERKVEglgeELSSMAAQRDRTQAE 273
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 633226 310 LHKLLKEAGEANKAIQDHLLEVEQSKDQMEKEMLEKIGRLEKELENANDLLSATKRKGAILSEE 373
Cdd:pfam07888 274 LHQARLQAAQLTLQLADASLALREGRARWAQERETLQQSAEADKDRIEKLSAELQRLEERLQEE 337
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
666-1138 |
3.52e-05 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 49.05 E-value: 3.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 666 IEAKAALKQLQEIFENYKKEkaeNEKIQNEQLEKLQeqVTDLRSQNTKISTQLDFASKRYEMLQDNVEGYRREITSLheR 745
Cdd:pfam10174 188 AEAEMQLGHLEVLLDQKEKE---NIHLREELHRRNQ--LQPDPAKTKALQTVIEMKDTKISSLERNIRDLEDEVQML--K 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 746 NQKLTATTQKQEQIINTMTQDLRGANEKLAVAEVRAENLKKEKEMLKLS---EVRLSQQ----------RESLLAEQRGQ 812
Cdd:pfam10174 261 TNGLLHTEDREEEIKQMEVYKSHSKFMKNKIDQLKQELSKKESELLALQtklETLTNQNsdckqhievlKESLTAKEQRA 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 813 NLLLTNLQTIQGILERSE------TETKQRLSSQIEKLEHEISHLKKKL---ENEVEQRHTLTRNLDVQLLDTKRQLDTE 883
Cdd:pfam10174 341 AILQTEVDALRLRLEEKEsflnkkTKQLQDLTEEKSTLAGEIRDLKDMLdvkERKINVLQKKIENLQEQLRDKDKQLAGL 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 884 TNLHLNTKELLKNAQKEIATLKQHLSNMEVQVASQSSQRTGKGQpSNKEDVDDLVSQLRQTEEQVNDLKERLKTSTSNVE 963
Cdd:pfam10174 421 KERVKSLQTDSSNTDTALTTLEEALSEKERIIERLKEQREREDR-ERLEELESLKKENKDLKEKVSALQPELTEKESSLI 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 964 QYQAMVTSLEESLNKEKQVTEEVRKNIEVRLKESAEFQTQLEK--KLMEVEKEKQELQDdkrrAIESMEQQLSELKKTLS 1041
Cdd:pfam10174 500 DLKEHASSLASSGLKKDSKLKSLEIAVEQKKEECSKLENQLKKahNAEEAVRTNPEIND----RIRLLEQEVARYKEESG 575
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1042 SVQNEVQ---EALQRASTALSN--------EQQARRDCQEQAKIAV-------EAQNKYERELMLH------AADVEALQ 1097
Cdd:pfam10174 576 KAQAEVErllGILREVENEKNDkdkkiaelESLTLRQMKEQNKKVAnikhgqqEMKKKGAQLLEEArrrednLADNSQQL 655
|
490 500 510 520
....*....|....*....|....*....|....*....|.
gi 633226 1098 AAKEQVSKMASVRQHLEETTQKAESQllecKASWEERERML 1138
Cdd:pfam10174 656 QLEELMGALEKTRQELDATKARLSST----QQSLAEKDGHL 692
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
12-274 |
3.61e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 49.25 E-value: 3.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 12 TELNKLPKSVQNkLEKFLADQQSEIDGLKGR----------HEKFKVESEQQYFEIEKRLSHSQERLVNETRECQSLRLE 81
Cdd:TIGR04523 419 QEKELLEKEIER-LKETIIKNNSEIKDLTNQdsvkeliiknLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKE 497
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 82 LEKLNNQLKALTEKNKELEiaqdrniAIQSQFTRTKEELEAEKRdlirtneRLSQELEYLTEDVKRLNEKLKESNtTKGE 161
Cdd:TIGR04523 498 LKKLNEEKKELEEKVKDLT-------KKISSLKEKIEKLESEKK-------EKESKISDLEDELNKDDFELKKEN-LEKE 562
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 162 LQLKLDELqasdvsvkyreKRLEQEKELLHSQNTWLNTELKTKTDELLALGRE---KGNEILELKCNLENKKEEVSRLEE 238
Cdd:TIGR04523 563 IDEKNKEI-----------EELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEieeKEKKISSLEKELEKAKKENEKLSS 631
|
250 260 270
....*....|....*....|....*....|....*.
gi 633226 239 QMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEK 274
Cdd:TIGR04523 632 IIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKK 667
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
39-521 |
3.92e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 48.95 E-value: 3.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 39 LKGRHEKFKVESEQQYFEI---EKRLSHSQERLVNETRECQSLRLELEKLNNQLKALTEKNKELEIAQDRNIAIQSQFTR 115
Cdd:pfam05483 217 LKEDHEKIQHLEEEYKKEIndkEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTK 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 116 TKEELEAEKRDLIRTNERLSQELEYLTEDVKRLNE----KLKESNTTKGELQLKLDELQASDVSVKYREKRLEQEKELLH 191
Cdd:pfam05483 297 ELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEekeaQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 192 SQNTWLNTELKTKTDELLALGREKGNEILELK----------------------------------CNLENKKEEVSRLE 237
Cdd:pfam05483 377 DQLKIITMELQKKSSELEEMTKFKNNKEVELEelkkilaedeklldekkqfekiaeelkgkeqeliFLLQAREKEIHDLE 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 238 EQMNGLKTSNEHLQKHVEDLLTKLKEAKEQqasmeekfHNELNAHIKLSNLyksaaddseaksneltraveELHKLLKEA 317
Cdd:pfam05483 457 IQLTAIKTSEEHYLKEVEDLKTELEKEKLK--------NIELTAHCDKLLL--------------------ENKELTQEA 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 318 GEANKAIQDHLLEVEQSKDQmEKEMLEKIGRLEKELENANDLLSATkRKGAILSEEELAAMSPTAAAVAKIVKPGMKLTE 397
Cdd:pfam05483 509 SDMTLELKKHQEDIINCKKQ-EERMLKQIENLEEKEMNLRDELESV-REEFIQKGDEVKCKLDKSEENARSIEYEVLKKE 586
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 398 LYNAYVETQDQLLLEKLENKriNKYLDEIVKEVEAKAPILKRQREEYERAQKAVASLSVKLEQAMKEIQRLQedtdkank 477
Cdd:pfam05483 587 KQMKILENKCNNLKKQIENK--NKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEII-------- 656
|
490 500 510 520
....*....|....*....|....*....|....*....|....
gi 633226 478 qssvlerDNRRMEIQVKDLSQQirVLLMELEEARgnhVIRDEEV 521
Cdd:pfam05483 657 -------DNYQKEIEDKKISEE--KLLEEVEKAK---AIADEAV 688
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1280-1419 |
4.19e-05 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 48.70 E-value: 4.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1280 REEKERLEQDLQQMQAKVRKLEldilplqeanaelsEKSGMLQAEKKLLEEDVKRWKARNQHLVSQQKDPDTEEYRKLLS 1359
Cdd:COG2433 398 EREKEHEERELTEEEEEIRRLE--------------EQVERLEAEVEELEAELEEKDERIERLERELSEARSEERREIRK 463
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1360 EKEvhtkrIQQLTEEIGRLKAEIARSNASLTNNQNLIQSLKEDLNKVRTEKETIQKDLDA 1419
Cdd:COG2433 464 DRE-----ISRLDREIERLERELEEERERIEELKRKLERLKELWKLEHSGELVPVKVVEK 518
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2-214 |
4.36e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 4.36e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 2 AAVLQQVLERTELNKLPKSVQNKL---EKFLADQQSEIDGLKGRHEkfkvESEQQYFEIEKRLSHSQERLVNETRECQSL 78
Cdd:COG4942 13 LAAAAQADAAAEAEAELEQLQQEIaelEKELAALKKEEKALLKQLA----ALERRIAALARRIRALEQELAALEAELAEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 79 RLELEKLNNQLKALTEKNKELEIAQDRNiaiqSQFTRTKEELEAEK-RDLIRTNERLSQELEYLTEDVKRLNEKLKESNT 157
Cdd:COG4942 89 EKEIAELRAELEAQKEELAELLRALYRL----GRQPPLALLLSPEDfLDAVRRLQYLKYLAPARREQAEELRADLAELAA 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 633226 158 TKGELQLKLDELQASDVSVKYREKRLEQEKELLHSQNTWLNTELKTKTDELLALGRE 214
Cdd:COG4942 165 LRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQE 221
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1276-1640 |
4.45e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 48.88 E-value: 4.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1276 NKMLREEKERLEQDLQQMQAKVRK--------LELDILPLQEANAELSEKSGMLQAEKKLLEEDVKRWKARNQHL--VSQ 1345
Cdd:PRK02224 179 ERVLSDQRGSLDQLKAQIEEKEEKdlherlngLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELetLEA 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1346 QKDPDTEEYRKLLSEKEVHTKRIQQLTEEIGRLKAEIARSNASLTNNQNLIQSLKEDLNKVRTEKETIQKDLDAKIIDIQ 1425
Cdd:PRK02224 259 EIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQ 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1426 EKVKTITQVKKIGRRYKTQYEELKAQQDKVMEtsaqssgdhqeqhvsvqEMQELKETLNQAETKSKSLESQVENLQKTLS 1505
Cdd:PRK02224 339 AHNEEAESLREDADDLEERAEELREEAAELES-----------------ELEEAREAVEDRREEIEELEEEIEELRERFG 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1506 EKETEARNLQEQTVQLQSELSRLRQDLQDRTTQEEQLRQQITEKEE-------KTRKAIVAAKSKIAHLAGVKDQLTKEN 1578
Cdd:PRK02224 402 DAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEAlleagkcPECGQPVEGSPHVETIEEDRERVEELE 481
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 633226 1579 EELKQrngaLDQQKDELDVRITALKS--QYEGRISRLERELREHQERHLEQRDEPQEPSNKVPE 1640
Cdd:PRK02224 482 AELED----LEEEVEEVEERLERAEDlvEAEDRIERLEERREDLEELIAERRETIEEKRERAEE 541
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
65-499 |
5.28e-05 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 48.74 E-value: 5.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 65 QERLVNETRECQSLRLELEKLNNQLKALTEKNKELEIAQD---RNIAIQSQFTRTKEELEAEKRDLIRTNERLSQELEYL 141
Cdd:PRK01156 151 RKKILDEILEINSLERNYDKLKDVIDMLRAEISNIDYLEEklkSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNA 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 142 TEDVKRLNEKLKESNTTKGELQLKLDELQASDVSVKYREKRLEQEKELLHSQNTWLNTELKTKTDELLALGREKgNEILE 221
Cdd:PRK01156 231 MDDYNNLKSALNELSSLEDMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYK-NDIEN 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 222 LKCNLENKKEEVSRLEEQMNGLktsnEHLQKHVEDLLTKLKEAKE--QQASMEEKFHNELNAHIklsNLYKSAADDSEAK 299
Cdd:PRK01156 310 KKQILSNIDAEINKYHAIIKKL----SVLQKDYNDYIKKKSRYDDlnNQILELEGYEMDYNSYL---KSIESLKKKIEEY 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 300 SNELTRAVEELHKLLKEAGEANKAIQDHLLEVEQSKDQMEKemleKIGRLEKELENANDLLSATKRKGAILSEEELAAMS 379
Cdd:PRK01156 383 SKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISS----KVSSLNQRIRALRENLDELSRNMEMLNGQSVCPVC 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 380 PTAAAVAKIvkpgmklTELYNAYVETQDQLLLEKLENKRINKYLDE-IVKEVEAKAPILKRQREEYERAQKAVASLSVKL 458
Cdd:PRK01156 459 GTTLGEEKS-------NHIINHYNEKKSRLEEKIREIEIEVKDIDEkIVDLKKRKEYLESEEINKSINEYNKIESARADL 531
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 633226 459 EQAMKEIQRLQEDTDKANkqssvlERDNRRMEIQVKDLSQQ 499
Cdd:PRK01156 532 EDIKIKINELKDKHDKYE------EIKNRYKSLKLEDLDSK 566
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
29-217 |
5.52e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.76 E-value: 5.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 29 LADQQSEIDGLKGRHEKFK-VESEQQYFEIEKRLSHSQERLVNETRECQSLRLELEKLNNQLKALTEKNKELEiaqdrnI 107
Cdd:COG4913 257 IRELAERYAAARERLAELEyLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELE------A 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 108 AIQSQFTRTKEELEAEKRDLIRTNERLSQELEYLTEDVKRLNEKLkesNTTKGELQLKLDELQASDVSVKYREKRLEQEK 187
Cdd:COG4913 331 QIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPL---PASAEEFAALRAEAAALLEALEEELEALEEAL 407
|
170 180 190
....*....|....*....|....*....|
gi 633226 188 ELLHSQNTWLNTELKTKTDELLALGREKGN 217
Cdd:COG4913 408 AEAEAALRDLRRELRELEAEIASLERRKSN 437
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
6-511 |
6.54e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 48.58 E-value: 6.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 6 QQVLERTELNKLP-KSVQNKLEKFLADQQSEIDGLKGR-------HEKFKVESE--------QQYFEIEKRLSHSQERLV 69
Cdd:pfam15921 202 KKIYEHDSMSTMHfRSLGSAISKILRELDTEISYLKGRifpvedqLEALKSESQnkielllqQHQDRIEQLISEHEVEIT 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 70 NETRECQSLRLELEKLNNQLKALTEKNKELEIAQDRNIaiqSQFTRTKEELEAEKRDLIRTNERLSQELEyltEDVKRLN 149
Cdd:pfam15921 282 GLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQL---SDLESTVSQLRSELREAKRMYEDKIEELE---KQLVLAN 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 150 EKLKESNTTKGELQLKL----DELQASDVSVKYREKRLEQEKEllHSQNTW------------LNTELKTKTDELLAL-- 211
Cdd:pfam15921 356 SELTEARTERDQFSQESgnldDQLQKLLADLHKREKELSLEKE--QNKRLWdrdtgnsitidhLRRELDDRNMEVQRLea 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 212 ------------------GREKGNEILE----LKCNLENKKEEVSRLEEQMNGLKTSNEHLQKHVEDLLTKLKEaKEQQA 269
Cdd:pfam15921 434 llkamksecqgqmerqmaAIQGKNESLEkvssLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQE-KERAI 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 270 SMEEKFHNELNAHIKLSnlyksaaddseaksneltraVEELHKLLKEageankaiQDHLLEVEQSKDQMEKEMLEK---I 346
Cdd:pfam15921 513 EATNAEITKLRSRVDLK--------------------LQELQHLKNE--------GDHLRNVQTECEALKLQMAEKdkvI 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 347 GRLEKELENANDLLSATKRK-GAILSEEelaamsptaaavAKIVKpgmkltELYNAYVETQDqllLEKLENKRinkylDE 425
Cdd:pfam15921 565 EILRQQIENMTQLVGQHGRTaGAMQVEK------------AQLEK------EINDRRLELQE---FKILKDKK-----DA 618
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 426 IVKEVEAKAPILKRQREEYERAQ----KAVASLSVKLEQAMKEIQRLQEDTDKANKQSSVLERDNR----RMEIQVKDLS 497
Cdd:pfam15921 619 KIRELEARVSDLELEKVKLVNAGserlRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRnkseEMETTTNKLK 698
|
570
....*....|....
gi 633226 498 QQIRVLLMELEEAR 511
Cdd:pfam15921 699 MQLKSAQSELEQTR 712
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1491-1630 |
7.23e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.37 E-value: 7.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1491 KSLESQVENLQ---KTLSEKETEARNLQEQTVQLQselsRLRQDLQDRTTQEEQLRQQiteKEEKTRKAIVAAKSKIAHL 1567
Cdd:COG4913 221 PDTFEAADALVehfDDLERAHEALEDAREQIELLE----PIRELAERYAAARERLAEL---EYLRAALRLWFAQRRLELL 293
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 633226 1568 AGVKDQLTKENEELKQRNGALDQQKDELDVRITALKSQYEG----RISRLERELREHQERHLEQRDE 1630
Cdd:COG4913 294 EAELEELRAELARLEAELERLEARLDALREELDELEAQIRGnggdRLEQLEREIERLERELEERERR 360
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
923-1125 |
8.76e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.84 E-value: 8.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 923 TGKGQPSNKEDVDDLVSQLRQTEEQVNDLKERLKTstsnVEQYQAMVTSLEESLNKEKQVTEEVRKniEVRLKESAEFQT 1002
Cdd:COG4717 62 QGRKPELNLKELKELEEELKEAEEKEEEYAELQEE----LEELEEELEELEAELEELREELEKLEK--LLQLLPLYQELE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1003 QLEKKLMEVEKEKQELQdDKRRAIESMEQQLSELKKTLSSVQNEVQEALQRASTAlsnEQQARRDCQEQAKIAVEAQNKY 1082
Cdd:COG4717 136 ALEAELAELPERLEELE-ERLEELRELEEELEELEAELAELQEELEELLEQLSLA---TEEELQDLAEELEELQQRLAEL 211
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 633226 1083 ERELMLHAADVEALQAAKEQVSKMAsVRQHLEETTQKAESQLL 1125
Cdd:COG4717 212 EEELEEAQEELEELEEELEQLENEL-EAAALEERLKEARLLLL 253
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
851-1339 |
9.62e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.84 E-value: 9.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 851 LKKKLENEVEQRHTLTRNLDVQLLDTKRQLDTETNLHLNTKELLKNAQKEIATLKQHLSNMEVQVASQSSQRTGKGQpsn 930
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEK--- 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 931 KEDVDDLVSQLRQTEEQVNDLKERLktstsnveqyqamvtsleESLNKEKQVTEEVRKNIEVRLKESAEFQTQLEKKLME 1010
Cdd:COG4717 124 LLQLLPLYQELEALEAELAELPERL------------------EELEERLEELRELEEELEELEAELAELQEELEELLEQ 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1011 VEKEKQELQDDKRRAIESMEQQLSELKKTLSSVQNEVqEALQRASTALSNEQQARRDCQEQAK-----------IAVEAQ 1079
Cdd:COG4717 186 LSLATEEELQDLAEELEELQQRLAELEEELEEAQEEL-EELEEELEQLENELEAAALEERLKEarlllliaaalLALLGL 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1080 NKYERELMLHAADVEALQAAKEQVSKMASVRQHLEETTQKAESQLLECKASWEERERmlkdevskcvcrcEDLEKQNRLL 1159
Cdd:COG4717 265 GGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEEL-------------EELLAALGLP 331
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1160 HDQIEKLSDKVVASVKEGVQgplnvSLSEEGKSQEQileiLRFIRREKEIAETrFEVAQVESL-RYRQRVELLERELQEL 1238
Cdd:COG4717 332 PDLSPEELLELLDRIEELQE-----LLREAEELEEE----LQLEELEQEIAAL-LAEAGVEDEeELRAALEQAEEYQELK 401
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1239 EDSLNAERekvQVTAKTMAQHEELMKKTETMnvVMETNKMLREEKERLEQDLQQMQAKVRKLELDILPLqEANAELSEKS 1318
Cdd:COG4717 402 EELEELEE---QLEELLGELEELLEALDEEE--LEEELEELEEELEELEEELEELREELAELEAELEQL-EEDGELAELL 475
|
490 500
....*....|....*....|.
gi 633226 1319 GMLQAEKKLLEEDVKRWKARN 1339
Cdd:COG4717 476 QELEELKAELRELAEEWAALK 496
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
673-1564 |
9.81e-05 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 48.12 E-value: 9.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 673 KQLQEIFENYK-KEKAENEKI-----QNEQLEKLQEQVTDLRSQ-NTKIS---TQLDFASKRYEMLQDNVEGYR------ 736
Cdd:TIGR01612 751 KDLNKILEDFKnKEKELSNKIndyakEKDELNKYKSKISEIKNHyNDQINidnIKDEDAKQNYDKSKEYIKTISikedei 830
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 737 -REITSLHERNQKLTATTQKQEQIINTMTQDLRGANEKLA------VAEVRAENLKKEKEMLKLSEVRLSQQRESLlaEQ 809
Cdd:TIGR01612 831 fKIINEMKFMKDDFLNKVDKFINFENNCKEKIDSEHEQFAeltnkiKAEISDDKLNDYEKKFNDSKSLINEINKSI--EE 908
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 810 RGQNLllTNLQTIQGILE--RSETETKQRLSSQIEKLEHEISHLKKKLENEVEQRHTLTRNLDVQLLDTKRQLDTE-TNL 886
Cdd:TIGR01612 909 EYQNI--NTLKKVDEYIKicENTKESIEKFHNKQNILKEILNKNIDTIKESNLIEKSYKDKFDNTLIDKINELDKAfKDA 986
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 887 HLNTKELLKNAqkeiatLKQHLSNMEVQVASQSSQRTGKGQPSNKEDVDDLVSQLRQTEEQVNDLKERLKTSTSNV-EQY 965
Cdd:TIGR01612 987 SLNDYEAKNNE------LIKYFNDLKANLGKNKENMLYHQFDEKEKATNDIEQKIEDANKNIPNIEIAIHTSIYNIiDEI 1060
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 966 QAMVTSLEESLNKEkqVTEEVRKNIEV--RLKESAE---FQTQLEKKLMEVEKEKQELQDDkrraIESMEQQ-------L 1033
Cdd:TIGR01612 1061 EKEIGKNIELLNKE--ILEEAEINITNfnEIKEKLKhynFDDFGKEENIKYADEINKIKDD----IKNLDQKidhhikaL 1134
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1034 SELKKTLSSVQNEVQEALQR----ASTALSNEQQARRDCQEQAKIAVEAQNKY----ERELMLHAADVEALQAAKEQVSK 1105
Cdd:TIGR01612 1135 EEIKKKSENYIDEIKAQINDledvADKAISNDDPEEIEKKIENIVTKIDKKKNiydeIKKLLNEIAEIEKDKTSLEEVKG 1214
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1106 M-ASVRQHL--------EETTQKAESQLLECKASWEERERMLKD--EVSKCVCRCEDLEKQNRLLHDQIEKLSDKVVASV 1174
Cdd:TIGR01612 1215 InLSYGKNLgklflekiDEEKKKSEHMIKAMEAYIEDLDEIKEKspEIENEMGIEMDIKAEMETFNISHDDDKDHHIISK 1294
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1175 KEgvqgplNVSLSEegkSQEQILEILRFIRREKEIAETRFEVAQ--VESLRYRQRVELLERELQELEDSLNAER-----E 1247
Cdd:TIGR01612 1295 KH------DENISD---IREKSLKIIEDFSEESDINDIKKELQKnlLDAQKHNSDINLYLNEIANIYNILKLNKikkiiD 1365
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1248 KVQVTAKTMAQHEELMK----KTETMNVVMETNKMLREEKERLE-----QDLQQMQAKVRKLELDILPLQEANAELSEKS 1318
Cdd:TIGR01612 1366 EVKEYTKEIEENNKNIKdeldKSEKLIKKIKDDINLEECKSKIEstlddKDIDECIKKIKELKNHILSEESNIDTYFKNA 1445
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1319 GMLQAEKKLLEEDVKRWKARNQHLVSQQKDPDTEEYRKLLSE-------------------------KEVHTKRIQQLTE 1373
Cdd:TIGR01612 1446 DENNENVLLLFKNIEMADNKSQHILKIKKDNATNDHDFNINElkehidkskgckdeadknakaieknKELFEQYKKDVTE 1525
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1374 EIGRLKAEIARSNASLTNNQN--LIQSLKEDLNKVRTEKETIQ---KDLDAKIIDIQEKVKTITQVKKIGRRYKTQYEEL 1448
Cdd:TIGR01612 1526 LLNKYSALAIKNKFAKTKKDSeiIIKEIKDAHKKFILEAEKSEqkiKEIKKEKFRIEDDAAKNDKSNKAAIDIQLSLENF 1605
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1449 KAQQDKVMETSAQSSGDHQEQHVSVQEMQELkeTLNQAETKSKSLESQVENLQKTLSEKETEARNLQEQTVQL---QSEL 1525
Cdd:TIGR01612 1606 ENKFLKISDIKKKINDCLKETESIEKKISSF--SIDSQDTELKENGDNLNSLQEFLESLKDQKKNIEDKKKELdelDSEI 1683
|
970 980 990 1000
....*....|....*....|....*....|....*....|
gi 633226 1526 SRLRQDL-QDRTTQEEQLRQQITEKEEKTRKAIVAAKSKI 1564
Cdd:TIGR01612 1684 EKIEIDVdQHKKNYEIGIIEKIKEIAIANKEEIESIKELI 1723
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1-274 |
1.01e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 47.75 E-value: 1.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1 MAAVLQQVLERTELNKLPKSVQNKLEKFLAdQQSEIDGLKGRHEKFKveseqqyfEIEKRLS-HSQERLVNETRECQSLR 79
Cdd:PRK03918 461 LKRIEKELKEIEEKERKLRKELRELEKVLK-KESELIKLKELAEQLK--------ELEEKLKkYNLEELEKKAEEYEKLK 531
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 80 LELEKLNNQLKALTEKNKELEIAQDRNIAIQSQftrtKEELEAEKRDLIRTNERLSQE-LEYLTEDVKRLNEKLKESNTT 158
Cdd:PRK03918 532 EKLIKLKGEIKSLKKELEKLEELKKKLAELEKK----LDELEEELAELLKELEELGFEsVEELEERLKELEPFYNEYLEL 607
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 159 KG---ELQLKLDELQASDVSVKYREKRLEQEKellhsqntwlnTELKTKTDELLALGREKGNEilelkcNLENKKEEVSR 235
Cdd:PRK03918 608 KDaekELEREEKELKKLEEELDKAFEELAETE-----------KRLEELRKELEELEKKYSEE------EYEELREEYLE 670
|
250 260 270
....*....|....*....|....*....|....*....
gi 633226 236 LEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEK 274
Cdd:PRK03918 671 LSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKA 709
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1474-1648 |
1.02e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.45 E-value: 1.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1474 QEMQELKETLNQAETKskslESQVENLQKTLSEKETEARNLQEQTVQLQSELSRLRQ--DLQDRTTQEEQLRQQITEKEE 1551
Cdd:COG4717 71 KELKELEEELKEAEEK----EEEYAELQEELEELEEELEELEAELEELREELEKLEKllQLLPLYQELEALEAELAELPE 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1552 KTRKAivaaKSKIAHLAGVKDQLTKENEELKQRNGALDQQKDELDV----RITALKSQYE---GRISRLERELREHQERH 1624
Cdd:COG4717 147 RLEEL----EERLEELRELEEELEELEAELAELQEELEELLEQLSLateeELQDLAEELEelqQRLAELEEELEEAQEEL 222
|
170 180
....*....|....*....|....
gi 633226 1625 LEQRDEPQEPSNKVPEQQRQITLK 1648
Cdd:COG4717 223 EELEEELEQLENELEAAALEERLK 246
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
1444-1619 |
1.04e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 47.61 E-value: 1.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1444 QYEELKAQQDKVMETSAQSSGDHQEQHVSVQEMQELK-----ETLNQAETKSKSLESQVENLQKTLSEKETEARNLQEQT 1518
Cdd:PRK05771 44 RLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSvksleELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEI 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1519 VQLQ------SELSRLRQ-------------DLQDRTTQEEQLRQQITEKEEKTRKAIVaakskiahLAGVKDQLTKENE 1579
Cdd:PRK05771 124 ERLEpwgnfdLDLSLLLGfkyvsvfvgtvpeDKLEELKLESDVENVEYISTDKGYVYVV--------VVVLKELSDEVEE 195
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 633226 1580 ELKQrngaLDQQKDELDVRITA--LKSQYEGRISRLERELRE 1619
Cdd:PRK05771 196 ELKK----LGFERLELEEEGTPseLIREIKEELEEIEKERES 233
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1346-1565 |
1.06e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 47.13 E-value: 1.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1346 QKDPDTEEYRKLLSEKEVHTKRIQQLTEEIGRLKAEIARSNASLTNNQNLIQSLKEDLNKVRTEKETIQKDLDAKIIDIQ 1425
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALY 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1426 EK-------------------VKTITQVKKIGRRYKTQYEELKAQQDKVmetsaqssgdhqeqhvsVQEMQELKETLNQA 1486
Cdd:COG3883 97 RSggsvsyldvllgsesfsdfLDRLSALSKIADADADLLEELKADKAEL-----------------EAKKAELEAKLAEL 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 633226 1487 ETKSKSLESQVENLQKTLSEKETEARNLQEQTVQLQSELSRLRQDLQDRTTQEEQLRQQITEKEEKTRKAIVAAKSKIA 1565
Cdd:COG3883 160 EALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 238
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
23-511 |
1.12e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 47.73 E-value: 1.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 23 NKLEKFLADQQSEIDglkgRHEKFKVESEQQYFEIEKRLSHSQERlvnetrecqslRLELEKLNNQLKALTEKNKELEia 102
Cdd:PRK02224 209 NGLESELAELDEEIE----RYEEQREQARETRDEADEVLEEHEER-----------REELETLEAEIEDLRETIAETE-- 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 103 qdrniaiqsqftRTKEELEAEKRDLIRTNERLSQELEYLTEDVKRLNEKLKESNTTKGELQLKLDELQASDVSVKYREKR 182
Cdd:PRK02224 272 ------------REREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQA 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 183 LEQEKELLHSQNTWL---NTELKTKTDELLALGREKGNEILELKCNLENKKEEVSRLEEQMNGLKTSNEHLQKHVEDLLT 259
Cdd:PRK02224 340 HNEEAESLREDADDLeerAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELRE 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 260 KLKEAKEQQASMEEKFHNELNAhiklsnLYKSAADDSEAKSNELTRAVEElHKLLKEAGEANKAIQDHLLEVEQSKDQME 339
Cdd:PRK02224 420 ERDELREREAELEATLRTARER------VEEAEALLEAGKCPECGQPVEG-SPHVETIEEDRERVEELEAELEDLEEEVE 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 340 KemlekigrLEKELENANDLLSATKRKGAILSEEELAAmsptaaavakivkpgmKLTELYNAYVETQDqlllEKLENKRI 419
Cdd:PRK02224 493 E--------VEERLERAEDLVEAEDRIERLEERREDLE----------------ELIAERRETIEEKR----ERAEELRE 544
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 420 NKylDEIVKEVEAKAPILKRQREEYERAQKAVASLSVKLEQAMKEIQRLQE----DTDKANKQSSVLERDNRRMEIQ--- 492
Cdd:PRK02224 545 RA--AELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERirtlLAAIADAEDEIERLREKREALAeln 622
|
490 500
....*....|....*....|....*
gi 633226 493 ------VKDLSQQIRVLLMELEEAR 511
Cdd:PRK02224 623 derrerLAEKRERKRELEAEFDEAR 647
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
667-886 |
1.16e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.60 E-value: 1.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 667 EAKAALKQLQEIFENYK--KEKAENEKIQNEQLEKLQEQVTDLRSQNTKISTQ--------LDFASKRYEMLQDNVEGYR 736
Cdd:COG4913 222 DTFEAADALVEHFDDLEraHEALEDAREQIELLEPIRELAERYAAARERLAELeylraalrLWFAQRRLELLEAELEELR 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 737 REITSLHERNQKLTATTQKQEQIINTMTQDLRGANEKlavaevRAENLKKEKEMLKLSEVRLSQQRESLLAEQRGQNL-- 814
Cdd:COG4913 302 AELARLEAELERLEARLDALREELDELEAQIRGNGGD------RLEQLEREIERLERELEERERRRARLEALLAALGLpl 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 815 ------LLTNLQTIQGILERSETETKQ------RLSSQIEKLEHEISHLKKKLEnEVEQRHTltrNLDVQLLDTKRQLDT 882
Cdd:COG4913 376 pasaeeFAALRAEAAALLEALEEELEAleealaEAEAALRDLRRELRELEAEIA-SLERRKS---NIPARLLALRDALAE 451
|
....
gi 633226 883 ETNL 886
Cdd:COG4913 452 ALGL 455
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
1280-1527 |
1.18e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 47.60 E-value: 1.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1280 REEKERLEQDLQQMQAKVRKLELDILPLQEANAELSEKS----GMLQAEKKLLE--EDVKRWKAR----NQHLVSQQKDP 1349
Cdd:PRK11281 79 KEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETlstlSLRQLESRLAQtlDQLQNAQNDlaeyNSQLVSLQTQP 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1350 dtEEYRKLLSEkevHTKRIQQLT---------------EEIGRLKAEIARSNASLTNNQNLIQSlkedlNKVRTEKETIQ 1414
Cdd:PRK11281 159 --ERAQAALYA---NSQRLQQIRnllkggkvggkalrpSQRVLLQAEQALLNAQNDLQRKSLEG-----NTQLQDLLQKQ 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1415 KDL-DAKIIDIQEKVKTITQVkkIGRRYKTQYEELKAQQDkvmetSAQSSGDHQEQHVSVQEMQ---ELKETLNQAETKS 1490
Cdd:PRK11281 229 RDYlTARIQRLEHQLQLLQEA--INSKRLTLSEKTVQEAQ-----SQDEAARIQANPLVAQELEinlQLSQRLLKATEKL 301
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 633226 1491 KSL-------ESQVENLQKTlseketeARNLQEQTVQLQSE--LSR 1527
Cdd:PRK11281 302 NTLtqqnlrvKNWLDRLTQS-------ERNIKEQISVLKGSllLSR 340
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
51-521 |
1.27e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 47.77 E-value: 1.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 51 EQQYFEIEKRLSHSQERlvNETRECQSLRLELEK-LNNQLKALTEKNKELEIaqdRNIAIQSQFTRTkeeLEAEKRDLIR 129
Cdd:COG5022 793 WRLFIKLQPLLSLLGSR--KEYRSYLACIIKLQKtIKREKKLRETEEVEFSL---KAEVLIQKFGRS---LKAKKRFSLL 864
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 130 TNERLSQELEYLTEDVKRLNEKLKESNTTKGELQLKLDELQAsdvsvKYREKRLEQEKELLhsqntwLNTELKTKTDELL 209
Cdd:COG5022 865 KKETIYLQSAQRVELAERQLQELKIDVKSISSLKLVNLELES-----EIIELKKSLSSDLI------ENLEFKTELIARL 933
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 210 ALGREKGNEILELKCNLEnKKEEVSRLEEQMNGLKTSNEHLqkhvEDLLTKLKEAKEQQASMEEKFHN---ELNAHIKLs 286
Cdd:COG5022 934 KKLLNNIDLEEGPSIEYV-KLPELNKLHEVESKLKETSEEY----EDLLKKSTILVREGNKANSELKNfkkELAELSKQ- 1007
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 287 nlyKSAADDSEAKSNELTRAVEELH---KLLKEAGEA-------NKAIQDHLLEVEQSKDQME-----KEMLEKIGRLEK 351
Cdd:COG5022 1008 ---YGALQESTKQLKELPVEVAELQsasKIISSESTElsilkplQKLKGLLLLENNQLQARYKalklrRENSLLDDKQLY 1084
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 352 ELENANDLLSATKRKGAILSEEELAAMSP-TAAAVAKIVKPG-----MKLTELYNAYVETQDQLLLEKLENKRINKYLDE 425
Cdd:COG5022 1085 QLESTENLLKTINVKDLEVTNRNLVKPANvLQFIVAQMIKLNllqeiSKFLSQLVNTLEPVFQKLSVLQLELDGLFWEAN 1164
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 426 IVKEVEAKAPILKRQREEYEraqkaVASLSVKLEQAMKEIQRLQEDTDKANKQssvlERDNRRMEIQVKDLSQQIRVLLM 505
Cdd:COG5022 1165 LEALPSPPPFAALSEKRLYQ-----SALYDEKSKLSSSEVNDLKNELIALFSK----IFSGWPRGDKLKKLISEGWVPTE 1235
|
490
....*....|....*.
gi 633226 506 ELEEARGNHVIRDEEV 521
Cdd:COG5022 1236 YSTSLKGFNNLNKKFD 1251
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
118-996 |
1.30e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.44 E-value: 1.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 118 EELEAEKRDLIRTNERLSQELEYLTEDVKRLNEKLKESNTTKGELQLKLDELQASDVSVKYRE-KRLEQEKELLHSQNTw 196
Cdd:PTZ00121 1112 EEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDaKKAEAARKAEEVRKA- 1190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 197 lnTELKTKTDELLALGREKGNEilelkcnlENKKEEVSRLEEQMNGLKTsnehlqKHVEDLLTKLKEAKEQqasmEEKFH 276
Cdd:PTZ00121 1191 --EELRKAEDARKAEAARKAEE--------ERKAEEARKAEDAKKAEAV------KKAEEAKKDAEEAKKA----EEERN 1250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 277 NELNAHIKLSNLYKSAADDSEAKSNElTRAVEELHKL--LKEAGEANKAiqDHLLEVEQSKDQMEKEmlEKIGRLEKELE 354
Cdd:PTZ00121 1251 NEEIRKFEEARMAHFARRQAAIKAEE-ARKADELKKAeeKKKADEAKKA--EEKKKADEAKKKAEEA--KKADEAKKKAE 1325
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 355 NANDLLSATKRKG--AILSEEELAAMSPTAAAVAKIVKPGMKLTELYNAYVETQDQLLLEKLENKRINKYLDEIVKEVEA 432
Cdd:PTZ00121 1326 EAKKKADAAKKKAeeAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKK 1405
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 433 KAPILKRQREEYERAQ--KAVASLSVKLEQAMKEIQRLQEDTDKANKQSSVLERDNRRMEIQVKDLSQQIRVLLMELEEA 510
Cdd:PTZ00121 1406 KADELKKAAAAKKKADeaKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKA 1485
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 511 RGNHVIRDEEVSSADISSSSEVISQHLVSYRNIEELQQQNQrllvaLRELGETREREEQETTSSKITELQLKLESALTEL 590
Cdd:PTZ00121 1486 DEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADE-----AKKAEEAKKADEAKKAEEKKKADELKKAEELKKA 1560
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 591 EQLRKSRQhqmqlvdsiVRQRDMYRILLSQTTGVAIPLHASSLDDVSLASTPKRPSTSQtvstpapvpviESTEAIEAKA 670
Cdd:PTZ00121 1561 EEKKKAEE---------AKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAE-----------EAKKAEEAKI 1620
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 671 ALKQLQEIFENYK-----KEKAENEKIQNEQLEKLQEQVTDLRSQNTKISTQldfASKRYEMLQDNVEGYRREitslHER 745
Cdd:PTZ00121 1621 KAEELKKAEEEKKkveqlKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEE---DKKKAEEAKKAEEDEKKA----AEA 1693
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 746 NQKLTATTQKQEQIINTMTQDLRGANEKLAVAEVR---AENLKKEKEMLKLSEVRLSQQRESllaEQRGQNLLLTNLQTI 822
Cdd:PTZ00121 1694 LKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENkikAEEAKKEAEEDKKKAEEAKKDEEE---KKKIAHLKKEEEKKA 1770
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 823 QGILERSETETKQRLSSQIEKLEHEISHLKKKLENEVEQRHTLTRNLDVQLLDTKRQLDTETNLHLNTKELLKNAQKEIA 902
Cdd:PTZ00121 1771 EEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFE 1850
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 903 TLKQHLSNMEVQvaSQSSQRTGKGQPSNKEDVDDLVSQLRQTEE-QVNDLKERLKTSTSNVEQYQAMVTSLEESLNKEKQ 981
Cdd:PTZ00121 1851 KHKFNKNNENGE--DGNKEADFNKEKDLKEDDEEEIEEADEIEKiDKDDIEREIPNNNMAGKNNDIIDDKLDKDEYIKRD 1928
|
890
....*....|....*
gi 633226 982 VTEEVRKNIEVRLKE 996
Cdd:PTZ00121 1929 AEETREEIIKISKKD 1943
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1284-1557 |
1.56e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.22 E-value: 1.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1284 ERLEQDLQQMQAKVRKLEldilPLQEANAELSEKSGmLQAEKKLLEEDVKRWKA-RNQHLVSQQKDPDTEEYRKLLSEKE 1362
Cdd:COG4913 238 ERAHEALEDAREQIELLE----PIRELAERYAAARE-RLAELEYLRAALRLWFAqRRLELLEAELEELRAELARLEAELE 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1363 VHTKRIQQLTEEIGRLKAEIARsnasltNNQNLIQSLKEDLNKVRTEKETIQKDLDakiidiqekvKTITQVKKIGRRYK 1442
Cdd:COG4913 313 RLEARLDALREELDELEAQIRG------NGGDRLEQLEREIERLERELEERERRRA----------RLEALLAALGLPLP 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1443 TQYEELKAQQDKVMETsaqssgdhqeqhvsVQEMQELKETLNQAETKsksLESQVENLQKTLSEKETEARNLQEQTVQLQ 1522
Cdd:COG4913 377 ASAEEFAALRAEAAAL--------------LEALEEELEALEEALAE---AEAALRDLRRELRELEAEIASLERRKSNIP 439
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 633226 1523 SELSRLRQDLQDRTTQ-EEQLR-----QQITEKEEKTRKAI 1557
Cdd:COG4913 440 ARLLALRDALAEALGLdEAELPfvgelIEVRPEEERWRGAI 480
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
3-596 |
1.59e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 47.27 E-value: 1.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 3 AVLQQVLERTELNKLPKSVQnKLEKFLADQQSEIDGLKGRHEKFKVESEQQYFEIEKRLSHSQERLVNETRECQSLRLEL 82
Cdd:pfam02463 305 LERRKVDDEEKLKESEKEKK-KAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLES 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 83 EKLNNQLK----ALTEKNKELEIAQDRNIAIQSQFTRTKEELEAEKRDLIRTNERLSQELEYLTEDVKRLNEKLKESNTT 158
Cdd:pfam02463 384 ERLSSAAKlkeeELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKD 463
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 159 KGELQLKLDELQaSDVSVKYREKRLEQEKELLHSQNTWLNTELKTKTDELLALGREKGNEILELKCNLENKKEEVSRLEE 238
Cdd:pfam02463 464 ELELKKSEDLLK-ETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYK 542
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 239 QMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKFHNELNAHIKLS----------------NLYKSAADDSEAKSNE 302
Cdd:pfam02463 543 VAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPlksiavleidpilnlaQLDKATLEADEDDKRA 622
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 303 LTRAVEELHKLLKEAGEANKAIQDHLLE-VEQSKDQMEKEMLEKIGRLEKELENANDLLSATKRKGAILSEEELAAMSPT 381
Cdd:pfam02463 623 KVVEGILKDTELTKLKESAKAKESGLRKgVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIK 702
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 382 AAAVAKIVKPGMKLTELYNayVETQDQLLLEKLENKRINKYLDEIVKEVEAKAPILKRQREEYERAQKAVASLSVKLEQA 461
Cdd:pfam02463 703 KKEQREKEELKKLKLEAEE--LLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEER 780
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 462 MKEIQRLQEDTDKANKQSSVLERDNRRMEIQVKDLSQQIRVLLMELEEARGNHVIRDEEVSSADISSSSEVISQHLVSYR 541
Cdd:pfam02463 781 EKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLE 860
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*
gi 633226 542 NIEELQQQNQRLLVALRELGETREREEQETTSSKITELQLKLESALTELEQLRKS 596
Cdd:pfam02463 861 EEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEK 915
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
832-1160 |
1.60e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 47.25 E-value: 1.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 832 ETKQRLSSQIEKLEHEISHLKKKLENEVEQRHTLTRNLDvQLLDTKRQLDTETNL---HLNtkeLLKNA---QKEIATLK 905
Cdd:COG3096 278 NERRELSERALELRRELFGARRQLAEEQYRLVEMARELE-ELSARESDLEQDYQAasdHLN---LVQTAlrqQEKIERYQ 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 906 QHLSNMEVQVASQSSQRTGKgqpsnKEDVDDLVSQLRQTEEQVNDLKERLKTSTSNVE-------QYQAMVTSLEESLN- 977
Cdd:COG3096 354 EDLEELTERLEEQEEVVEEA-----AEQLAEAEARLEAAEEEVDSLKSQLADYQQALDvqqtraiQYQQAVQALEKARAl 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 978 --------------------KEKQVTEEVRkNIEVRLKESAEFQTQLEKKLMEVEK-----EKQELQDDKRRAI------ 1026
Cdd:COG3096 429 cglpdltpenaedylaafraKEQQATEEVL-ELEQKLSVADAARRQFEKAYELVCKiagevERSQAWQTARELLrryrsq 507
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1027 -------ESMEQQLSELKKTLSSvQNEVQEAL----QRASTALSN---------EQQARR-DCQEQAKIAVEAQNKYERE 1085
Cdd:COG3096 508 qalaqrlQQLRAQLAELEQRLRQ-QQNAERLLeefcQRIGQQLDAaeeleellaELEAQLeELEEQAAEAVEQRSELRQQ 586
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 633226 1086 LMLHAADVEALQAAKEQVSKMASVRQHLEETTQKA---ESQLLECKASWEERERMLKDEVSKCVCRCEDLEKQNRLLH 1160
Cdd:COG3096 587 LEQLRARIKELAARAPAWLAAQDALERLREQSGEAladSQEVTAAMQQLLEREREATVERDELAARKQALESQIERLS 664
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
13-1579 |
1.68e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 47.35 E-value: 1.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 13 ELNKLPKSVQNKLEKFLADQQSEIDGLKGRHEKFKVESEQ----QYF-EIEKRLSHSQERLVNETREcqslrlELEK-LN 86
Cdd:TIGR01612 956 ESNLIEKSYKDKFDNTLIDKINELDKAFKDASLNDYEAKNneliKYFnDLKANLGKNKENMLYHQFD------EKEKaTN 1029
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 87 NQLKALTEKNKELEiaqDRNIAIQSQFTRTKEELEAE-KRDLIRTNERLSQELEYLTEDVKRLNEKLKESNTT---KGEL 162
Cdd:TIGR01612 1030 DIEQKIEDANKNIP---NIEIAIHTSIYNIIDEIEKEiGKNIELLNKEILEEAEINITNFNEIKEKLKHYNFDdfgKEEN 1106
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 163 QLKLDELQASDVSVKYREKRLEQEKELLhsqntwlnTELKTKTDELLALGREKGNEiLELKCNLENKKEEVSRLEEQMNG 242
Cdd:TIGR01612 1107 IKYADEINKIKDDIKNLDQKIDHHIKAL--------EEIKKKSENYIDEIKAQIND-LEDVADKAISNDDPEEIEKKIEN 1177
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 243 LKTS---NEHLQKHVEDLLTKLKEAKEQQASMEEKFHNELNAHIKLSNLYKSAADDSEAKSNELTRAVEELHKLLKEAGE 319
Cdd:TIGR01612 1178 IVTKidkKKNIYDEIKKLLNEIAEIEKDKTSLEEVKGINLSYGKNLGKLFLEKIDEEKKKSEHMIKAMEAYIEDLDEIKE 1257
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 320 ANKAIQdhlleveqskDQMEKEMLEKigrleKELENANdLLSATKRKGAILSEEELAAMSPTAAAVAKIVKPGMKLTELY 399
Cdd:TIGR01612 1258 KSPEIE----------NEMGIEMDIK-----AEMETFN-ISHDDDKDHHIISKKHDENISDIREKSLKIIEDFSEESDIN 1321
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 400 NAYVETQDQLLLEKLENKRINKYLDEI-----------VKEVEAKAPILKRQREEYERAQKAVASLSVKLEQAMKEIQRL 468
Cdd:TIGR01612 1322 DIKKELQKNLLDAQKHNSDINLYLNEIaniynilklnkIKKIIDEVKEYTKEIEENNKNIKDELDKSEKLIKKIKDDINL 1401
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 469 QE------------DTDKANKQSSVL-------ERDNRRMEIQVKDLSQQIRVLLMELEEA--RGNHVIRDE-------- 519
Cdd:TIGR01612 1402 EEckskiestlddkDIDECIKKIKELknhilseESNIDTYFKNADENNENVLLLFKNIEMAdnKSQHILKIKkdnatndh 1481
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 520 --------EVSSADISSSSEVISQHLVSYRNIEELQQQNQRLLVALR---ELGETREREEQETTSSKI------TELQLK 582
Cdd:TIGR01612 1482 dfninelkEHIDKSKGCKDEADKNAKAIEKNKELFEQYKKDVTELLNkysALAIKNKFAKTKKDSEIIikeikdAHKKFI 1561
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 583 LESALTElEQLRKSRQHQMQLVDSIVRQRDmyrillSQTTGVAIPLHASSLDDVSLASTPKRPSTSQTVSTPAPVPVIES 662
Cdd:TIGR01612 1562 LEAEKSE-QKIKEIKKEKFRIEDDAAKNDK------SNKAAIDIQLSLENFENKFLKISDIKKKINDCLKETESIEKKIS 1634
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 663 TEAIEAKAALKQLQEIFENYKKEKAENEKIQNEQLEKLQEQVTDLRSQNTKISTQLDFASKRYEMlqdnveGYRREITSL 742
Cdd:TIGR01612 1635 SFSIDSQDTELKENGDNLNSLQEFLESLKDQKKNIEDKKKELDELDSEIEKIEIDVDQHKKNYEI------GIIEKIKEI 1708
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 743 HERNQ-KLTATTQKQEQIINTM-----TQDLRGANEKLAVAEVRAENLKKEKEMLKLSEVRL----SQQRESLLAEQ--- 809
Cdd:TIGR01612 1709 AIANKeEIESIKELIEPTIENLissfnTNDLEGIDPNEKLEEYNTEIGDIYEEFIELYNIIAgcleTVSKEPITYDEikn 1788
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 810 ---RGQNLLLTNLQtiqgilerSETETKQRLSS-QIEKLEHEISHLKKKLENEVeqrhtltrnldvqlldtkrqlDTETN 885
Cdd:TIGR01612 1789 triNAQNEFLKIIE--------IEKKSKSYLDDiEAKEFDRIINHFKKKLDHVN---------------------DKFTK 1839
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 886 LHLNTKELLKNAQKEIATLKQH-----LSNMEVQVASQSSQRTGKGQPSNKEDVDDLVSQLRQTEEQVNDLKErlktSTS 960
Cdd:TIGR01612 1840 EYSKINEGFDDISKSIENVKNStdenlLFDILNKTKDAYAGIIGKKYYSYKDEAEKIFINISKLANSINIQIQ----NNS 1915
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 961 NVEQYQAMVTSLEESLNKEKQVT------EEVRKNIEVRLKESAEFQTQLEKKLMEVEKEKQE---LQDDKRRAIESMeQ 1031
Cdd:TIGR01612 1916 GIDLFDNINIAILSSLDSEKEDTlkfipsPEKEPEIYTKIRDSYDTLLDIFKKSQDLHKKEQDtlnIIFENQQLYEKI-Q 1994
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1032 QLSELKKTLSSVQ-------NEVQEALQRAS-----TALSNEQQARRDCQEQAKIAvEAQNKYERELMLHAADVEaLQAA 1099
Cdd:TIGR01612 1995 ASNELKDTLSDLKykkekilNDVKLLLHKFDelnklSCDSQNYDTILELSKQDKIK-EKIDNYEKEKEKFGIDFD-VKAM 2072
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1100 KEQVSKMASVRQHLEETTQKAESQLLEckaSWEERERMLKDEvskcvcrcEDLEKQNRLLHDQIEKLSDKVVAsvKEGVQ 1179
Cdd:TIGR01612 2073 EEKFDNDIKDIEKFENNYKHSEKDNHD---FSEEKDNIIQSK--------KKLKELTEAFNTEIKIIEDKIIE--KNDLI 2139
|
1290 1300 1310 1320 1330 1340 1350 1360
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1180 GPLN-----------VSLSEEGKSqeQILEILRFIRREKEIAETRFEVAQVESLRYRQRVELLERELqeledSLNAEREK 1248
Cdd:TIGR01612 2140 DKLIemrkecllfsyATLVETLKS--KVINHSEFITSAAKFSKDFFEFIEDISDSLNDDIDALQIKY-----NLNQTKKH 2212
|
1370 1380 1390 1400 1410 1420 1430 1440
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1249 V-QVTAKTMAQHEELMKKTEtmnvvmETNKMLREEKERLEQDLQQMQAKVrkLELDILPLQEANAELsEKSgmLQAEKKL 1327
Cdd:TIGR01612 2213 MiSILADATKDHNNLIEKEK------EATKIINNLTELFTIDFNNADADI--LHNNKIQIIYFNSEL-HKS--IESIKKL 2281
|
1450 1460 1470 1480 1490 1500 1510 1520
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1328 LEEdVKRWKARNQHL-------VSQQKDPDTEEYRKLLSEKEVHTKRIQQLTEEIGRLKAEIARSNASLtnNQNLIQSLK 1400
Cdd:TIGR01612 2282 YKK-INAFKLLNISHinekyfdISKEFDNIIQLQKHKLTENLNDLKEIDQYISDKKNIFLHALNENTNF--NFNALKEIY 2358
|
1530 1540 1550 1560 1570 1580 1590 1600
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1401 EDLNKVRTEKETIQKDLDAKIIDIQEKVKTITQV-KKIGR--RYKTQYEelkaQQDKVMETSAQssgDHQEQHVS----- 1472
Cdd:TIGR01612 2359 DDIINRENKADEIENINNKENENIMQYIDTITKLtEKIQDilIFVTTYE----NDNNIIKQHIQ---DNDENDVSkikdn 2431
|
1610 1620 1630 1640 1650 1660 1670 1680
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1473 ----VQEMQELKETLNQAETKSKSlESQVENLQKTLSEKETEARNLQEQTVQLQSELSRLRQDLQD-RTTQEEQLRQQIT 1547
Cdd:TIGR01612 2432 lkktIQSFQEILNKIDEIKAQFYG-GNNINNIIITISQNANDVKNHFSKDLTIENELIQIQKRLEDiKNAAHEIRSEQIT 2510
|
1690 1700 1710
....*....|....*....|....*....|..
gi 633226 1548 EKEEKTRKAIVAAKSKIAHlAGVKDQLTKENE 1579
Cdd:TIGR01612 2511 KYTNAIHNHIEEQFKKIEN-NSNKDEVYKINE 2541
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
837-1049 |
1.69e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 46.93 E-value: 1.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 837 LSSQIEKLEHEISHLKKKLEneveqrhTLTRNLDVQLLDTKRQLDTETNLHLNTKELLKNAQKEIATLKQHLSNMEVQVA 916
Cdd:PHA02562 179 LNQQIQTLDMKIDHIQQQIK-------TYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 917 SQSSQ----RTGKGQPSNK-EDVDDLV-------------SQLRQTEEQVNDLKERLKTSTSNVEQYQAMVTSLEESLNk 978
Cdd:PHA02562 252 DPSAAlnklNTAAAKIKSKiEQFQKVIkmyekggvcptctQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMD- 330
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 633226 979 ekQVTEEVRKNIEVRLKESAEFQT--QLEKKLMEVEKEKQELQD---DKRRAIESMEQQLSELKKTLSSVQNEVQE 1049
Cdd:PHA02562 331 --EFNEQSKKLLELKNKISTNKQSliTLVDKAKKVKAAIEELQAefvDNAEELAKLQDELDKIVKTKSELVKEKYH 404
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
49-273 |
1.70e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 1.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 49 ESEQQYFEIEKRLSHSQERLVNETRECQSLRLELEKLNNQLKALTEKNKELEiaqdrniaiqsqftRTKEELEAEKRDLI 128
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALE--------------QELAALEAELAELE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 129 RTNERLSQELEYLTEDVKRLNEKL-KESNTTKGELQLKLDELQASDVSVKYREKRLEQEKELLhsqntwlnTELKTKTDE 207
Cdd:COG4942 90 KEIAELRAELEAQKEELAELLRALyRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQA--------EELRADLAE 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 633226 208 LLALGREKGNEILELKCNLENKKEEVSRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEE 273
Cdd:COG4942 162 LAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEA 227
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1475-1696 |
1.79e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 46.36 E-value: 1.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1475 EMQELKETLNQAETKSKSLESQVENLQKTLSEKETEARNLQEQTVQLQSELSRLRQDLQDRTTQEEQLRQQITEK----- 1549
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERaraly 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1550 -------------------------------EEKTRKAIVAAKSKIAHLAGVKDQLTKENEELKQRNGALDQQKDELDvr 1598
Cdd:COG3883 97 rsggsvsyldvllgsesfsdfldrlsalskiADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELE-- 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1599 itALKSQYEGRISRLERELREHQERHLEQRDEPQEPSNKVPEQQRQITLKTTPASGERGIASTSDPPTANIKPTPVVSTP 1678
Cdd:COG3883 175 --AQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAAGAGAA 252
|
250
....*....|....*...
gi 633226 1679 SKVTAAAMAGNKSTPRAS 1696
Cdd:COG3883 253 GAAGAAAGSAGAAGAAAG 270
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1486-1624 |
2.09e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 2.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1486 AETKSKSLESQVENLQKTLSEKETEARNLQEQTVQLQSELSRLRQdLQDRTTQE---EQLRQQITEKEEKtRKAIVAAKS 1562
Cdd:COG4913 608 NRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQR-LAEYSWDEidvASAEREIAELEAE-LERLDASSD 685
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 633226 1563 KIAHLagvKDQLtkenEELKQRNGALDQQKDELDVRITALKSQyegrISRLERELREHQERH 1624
Cdd:COG4913 686 DLAAL---EEQL----EELEAELEELEEELDELKGEIGRLEKE----LEQAEEELDELQDRL 736
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
980-1623 |
2.10e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 46.82 E-value: 2.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 980 KQVTEEVRKNI-----EVRLKESAEFQTQLEKKLMEVEKEKQELQDDKRRaIESMEQQLSELKKTLSSVQ------NEVQ 1048
Cdd:PRK01156 111 DDTTKYIEKNIlgiskDVFLNSIFVGQGEMDSLISGDPAQRKKILDEILE-INSLERNYDKLKDVIDMLRaeisniDYLE 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1049 EALQRASTALSNEQQARRDCQEQAKIAVEAQNKYERELMLHAADVEALQAAKEQVSKMASVRQHLEETTQKAESQL---- 1124
Cdd:PRK01156 190 EKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTAESDLsmel 269
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1125 ---LECKASWEERERMLKDEVSKCVCRCEDLEKqnrlLHDQIEKLSDkvvasVKEGVQGPLNVSLSEEGKsqeqiLEILR 1201
Cdd:PRK01156 270 eknNYYKELEERHMKIINDPVYKNRNYINDYFK----YKNDIENKKQ-----ILSNIDAEINKYHAIIKK-----LSVLQ 335
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1202 FIRREKEIAETRFEVAQVESLRYRQRvELLERELQELEDSLNAEREKVQVTAKTMAQheelmKKTETMNVVMETNKMLRE 1281
Cdd:PRK01156 336 KDYNDYIKKKSRYDDLNNQILELEGY-EMDYNSYLKSIESLKKKIEEYSKNIERMSA-----FISEILKIQEIDPDAIKK 409
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1282 EKERLEQDLQQMQAKVRKLELDILPLQEANAELSEKSGMLQAEKKLLEEDVKRWKARNQHLV---SQQKDPDTEEYRKLL 1358
Cdd:PRK01156 410 ELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCPVCGTTLGEEKSNHIInhyNEKKSRLEEKIREIE 489
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1359 SE-KEVHTKRIQQLTEEIGRLKAEIARSNASltnnQNLIQSLKEDLNKVRTEKETIqKDLDAKIIDIQEKVKTITQvkKI 1437
Cdd:PRK01156 490 IEvKDIDEKIVDLKKRKEYLESEEINKSINE----YNKIESARADLEDIKIKINEL-KDKHDKYEEIKNRYKSLKL--ED 562
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1438 GRRYKTQYEELKAQQDKVMETSAQSSGDhqeqhvsvqemqELKETLNQAETKSKSLESQVENLQ----KTLSEKETEARN 1513
Cdd:PRK01156 563 LDSKRTSWLNALAVISLIDIETNRSRSN------------EIKKQLNDLESRLQEIEIGFPDDKsyidKSIREIENEANN 630
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1514 LQEQtvqlqselsrlRQDLQDRTTQEEQLRQQItekeEKTRKAIVAAKSKIAHLAGVKDQLTKENEELKQRNGALDQQKD 1593
Cdd:PRK01156 631 LNNK-----------YNEIQENKILIEKLRGKI----DNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKA 695
|
650 660 670
....*....|....*....|....*....|
gi 633226 1594 ELdVRITALKSQYEGRISRLERELREHQER 1623
Cdd:PRK01156 696 NR-ARLESTIEILRTRINELSDRINDINET 724
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
1475-1595 |
2.70e-04 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 45.73 E-value: 2.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1475 EMQELKETLNQAETKSKSLESQVENLQKTLSEKETEARNLQEQTVQLQSELSRLRQDLQDRTTQEEQLRQQITEKEEKT- 1553
Cdd:PRK09039 61 QIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVe 140
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 633226 1554 --RKAIVAAKSKIAHLAGVKDQLTKENEE-------LKQR-NGALDQQKDEL 1595
Cdd:PRK09039 141 llNQQIAALRRQLAALEAALDASEKRDREsqakiadLGRRlNVALAQRVQEL 192
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
679-861 |
2.81e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.45 E-value: 2.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 679 FENYKKEKAENEKIQ--NEQLEKLQEQVTDLRSQNTKISTQLDFASK--RYEMLQDNVEGYRREITSLHERNQKLTATTQ 754
Cdd:COG4913 606 FDNRAKLAALEAELAelEEELAEAEERLEALEAELDALQERREALQRlaEYSWDEIDVASAEREIAELEAELERLDASSD 685
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 755 kqeqiintmtqDLRGANEKLAVAEVRAENLKKEKEMLKLSEVRLSQQRESLL------------AEQRGQNLLLTNLQT- 821
Cdd:COG4913 686 -----------DLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEeeldelqdrleaAEDLARLELRALLEEr 754
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 633226 822 -IQGILERSETETKQRLSSQIEKLEHEISHLKKKLENEVEQ 861
Cdd:COG4913 755 fAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1484-1615 |
2.89e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 45.92 E-value: 2.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1484 NQAETKSKSLESQVEnlqKTLSEKETEARNL-QEQTVQLQSELSRLRQDLQDRTTQEeqlRQQITEKEEKTRKaivaaks 1562
Cdd:PRK12704 27 KIAEAKIKEAEEEAK---RILEEAKKEAEAIkKEALLEAKEEIHKLRNEFEKELRER---RNELQKLEKRLLQ------- 93
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 633226 1563 KIAHLAGVKDQLTKENEELKQRNGALDQQKDELDVRITALKSQYEGRISRLER 1615
Cdd:PRK12704 94 KEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELER 146
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
232-781 |
3.39e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 46.05 E-value: 3.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 232 EVSRLEEQMNGLKTSNEHLQKHV---EDLLTKLKEAKEQQASMEEKFHNELNAHIKLSNLYKSAADDSEAKSNELTRAVE 308
Cdd:PRK01156 160 EINSLERNYDKLKDVIDMLRAEIsniDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKS 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 309 ELHKLLKEAGEANKAIQDhlLEVEQSKDQMEKEMLEKIGRLEKELE---------NANDLLSATKRKGAILSEEELaaMS 379
Cdd:PRK01156 240 ALNELSSLEDMKNRYESE--IKTAESDLSMELEKNNYYKELEERHMkiindpvykNRNYINDYFKYKNDIENKKQI--LS 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 380 PTAAAVAKIVKPGMKLTELYNAYvetqDQLLLEKLENKRINKYLDEI----------VKEVEAKapilKRQREEYERAQK 449
Cdd:PRK01156 316 NIDAEINKYHAIIKKLSVLQKDY----NDYIKKKSRYDDLNNQILELegyemdynsyLKSIESL----KKKIEEYSKNIE 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 450 avaslsvKLEQAMKEIQRLQE-DTDKANKQSSVLERDNRRMEIQVKDLSQQIRVLLMELEEARGN-HVIRDEEVSSADIS 527
Cdd:PRK01156 388 -------RMSAFISEILKIQEiDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNmEMLNGQSVCPVCGT 460
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 528 SSSEVISQHLVSYRN-----IEELQQQNQRLLVALRELGETREREEQETTSSKITELQL---KLESALTELEQLR----- 594
Cdd:PRK01156 461 TLGEEKSNHIINHYNekksrLEEKIREIEIEVKDIDEKIVDLKKRKEYLESEEINKSINeynKIESARADLEDIKikine 540
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 595 -----------KSRQHQMQLVDsIVRQRDMYRILLSQTTGVAIPLHASSLDDVSLASTPKRPSTSQTVS--------TPA 655
Cdd:PRK01156 541 lkdkhdkyeeiKNRYKSLKLED-LDSKRTSWLNALAVISLIDIETNRSRSNEIKKQLNDLESRLQEIEIgfpddksyIDK 619
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 656 PVPVIES---------TEAIEAKAALKQLQEIFENYKKEKAENEKIQNEQLEkLQEQVTDLRSQNTKISTQLDFASKRYE 726
Cdd:PRK01156 620 SIREIENeannlnnkyNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKE-ITSRINDIEDNLKKSRKALDDAKANRA 698
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*
gi 633226 727 MLQDNVEGYRREITSLHERNQKLTATTQKQEQIINTMTqDLRGANEKLAVAEVRA 781
Cdd:PRK01156 699 RLESTIEILRTRINELSDRINDINETLESMKKIKKAIG-DLKRLREAFDKSGVPA 752
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
894-1051 |
3.81e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 44.53 E-value: 3.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 894 LKNAQKEIATLKQHLSNMEVQVASQSSQRTGKgqpsnKEDVDDLVSQLRQTEEQVNDLKERLKTST------SNVEQYQA 967
Cdd:COG1579 19 LDRLEHRLKELPAELAELEDELAALEARLEAA-----KTELEDLEKEIKRLELEIEEVEARIKKYEeqlgnvRNNKEYEA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 968 MvTSLEESLNKEKQVTEEVRKNIEVRLKESAEFQTQLEKKLMEVEKEKQELQDDKRRAIESMEQQLSELKKTLSSVQNEV 1047
Cdd:COG1579 94 L-QKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAKI 172
|
....
gi 633226 1048 QEAL 1051
Cdd:COG1579 173 PPEL 176
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1435-1632 |
3.98e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.53 E-value: 3.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1435 KKIGRRYKTQYEELKAQQDKVMETSAQssgdHQEQHVSVQEMQELKETLNQAETKSKSLESQVENLqktlsEKETEARNL 1514
Cdd:COG4717 60 KPQGRKPELNLKELKELEEELKEAEEK----EEEYAELQEELEELEEELEELEAELEELREELEKL-----EKLLQLLPL 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1515 QEQTVQLQSELSRLRQDLQDRTTQEEQLRQQITEKEEKTRKAIVAAKSKIAHLAGVKDQLTKENEELKQRNGALDQQKDE 1594
Cdd:COG4717 131 YQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAE 210
|
170 180 190
....*....|....*....|....*....|....*...
gi 633226 1595 LDVRITALKSqyegRISRLERELREHQERHLEQRDEPQ 1632
Cdd:COG4717 211 LEEELEEAQE----ELEELEEELEQLENELEAAALEER 244
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
931-1598 |
4.36e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 4.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 931 KEDVDDLVS---QLRQTEEQVNDLK------ERLKTSTSNVEQYQAMVTSL-----EESLNKEKQVTEEVRKNIEVRLKE 996
Cdd:COG4913 231 VEHFDDLERaheALEDAREQIELLEpirelaERYAAARERLAELEYLRAALrlwfaQRRLELLEAELEELRAELARLEAE 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 997 SAEFQTQLEKKLMEVEKEKQELQDDKRRAIESMEQQLSELKKTLSSVQN---EVQEALQRASTALSNEQQA----RRDCQ 1069
Cdd:COG4913 311 LERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERrraRLEALLAALGLPLPASAEEfaalRAEAA 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1070 EQAKIAVEAQNKYERELMLHAADVEALQAAKEQVSK---------------MASVRQHLEETTQKAESQ------LLECK 1128
Cdd:COG4913 391 ALLEALEEELEALEEALAEAEAALRDLRRELRELEAeiaslerrksniparLLALRDALAEALGLDEAElpfvgeLIEVR 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1129 ---ASWEE---------RERMLKDEvskcvcrcEDLEKQNRLLHDqiEKLSDKVVAS-VKEGVQGPLNVSLSEEGksqeq 1195
Cdd:COG4913 471 peeERWRGaiervlggfALTLLVPP--------EHYAAALRWVNR--LHLRGRLVYErVRTGLPDPERPRLDPDS----- 535
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1196 ILEILRF----IRR--EKEIAEtRFEVAQVESL----RY---------------------RQRVELLERELQELEDSLNA 1244
Cdd:COG4913 536 LAGKLDFkphpFRAwlEAELGR-RFDYVCVDSPeelrRHpraitragqvkgngtrhekddRRRIRSRYVLGFDNRAKLAA 614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1245 EREKVQVTAKTMAQHEELMKKTETmnvVMETNKMLREEKERLEQ------DLQQMQAKVRKLELDILPLQEANAELSEks 1318
Cdd:COG4913 615 LEAELAELEEELAEAEERLEALEA---ELDALQERREALQRLAEyswdeiDVASAEREIAELEAELERLDASSDDLAA-- 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1319 gmlqaekklLEEDVKRWKARNQHLvsqqkdpdTEEYRKLLSEKEVHTKRIQQLTEEIGRLKAEIARsnASLTNNQNLIQS 1398
Cdd:COG4913 690 ---------LEEQLEELEAELEEL--------EEELDELKGEIGRLEKELEQAEEELDELQDRLEA--AEDLARLELRAL 750
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1399 LKEDLNKVRTEK--ETIQKDLDAKIIDIQEKV-KTITQVKKIGRRYKTQYEELKAQQDkvmeTSAQSSGDHQEQHVSVQE 1475
Cdd:COG4913 751 LEERFAAALGDAveRELRENLEERIDALRARLnRAEEELERAMRAFNREWPAETADLD----ADLESLPEYLALLDRLEE 826
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1476 ------MQELKETLNQAETKSkslesqVENLQKTLsekETEARNLQEQTVQLQSEL--------SRLRQDLQDRTTQE-E 1540
Cdd:COG4913 827 dglpeyEERFKELLNENSIEF------VADLLSKL---RRAIREIKERIDPLNDSLkripfgpgRYLRLEARPRPDPEvR 897
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*....
gi 633226 1541 QLRQQITEKEEK-TRKAIVAAKSKIAHLAGVKDQLTKENEELKQRNgaldqQKDELDVR 1598
Cdd:COG4913 898 EFRQELRAVTSGaSLFDEELSEARFAALKRLIERLRSEEEESDRRW-----RARVLDVR 951
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1367-1588 |
4.96e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 44.15 E-value: 4.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1367 RIQQLTEEIGRLKAEIARSNASLTNNQNLIQSLKEDLNKVRTEKETIQKDLdakiidiqekvktitqvkkigRRYKTQYE 1446
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEI---------------------KRLELEIE 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1447 ELKAQQDKVmetsaqssgdhQEQHVSVQEMQELketlnqaetksKSLESQVENLQKTLSEKETEARNLQEQTVQLQSELS 1526
Cdd:COG1579 70 EVEARIKKY-----------EEQLGNVRNNKEY-----------EALQKEIESLKRRISDLEDEILELMERIEELEEELA 127
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 633226 1527 RLRQDLQDRTTQEEQLRQQITEKEEKTRKAIVAAKSKIAHLA-GVKDQLTKENEELKQRNGAL 1588
Cdd:COG1579 128 ELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAaKIPPELLALYERIRKRKNGL 190
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
970-1551 |
6.27e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.03 E-value: 6.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 970 TSLEESLNKEKQVTEEVRKNIEVrlKESAEFQTQL---EKKLMEVEKEKQELQDDKRRAIESME-------------QQL 1033
Cdd:PRK02224 176 LGVERVLSDQRGSLDQLKAQIEE--KEEKDLHERLnglESELAELDEEIERYEEQREQARETRDeadevleeheerrEEL 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1034 SELKKTLSSVQNEVQEAlQRASTALSNEQQARRDCQEQAKiavEAQNKYERELMLHAADVEALQAAKEQVSKmasvrqHL 1113
Cdd:PRK02224 254 ETLEAEIEDLRETIAET-EREREELAEEVRDLRERLEELE---EERDDLLAEAGLDDADAEAVEARREELED------RD 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1114 EETTQKAESQLLECKASWEERERMLKDevskcvcrCEDLEKQNRLLHDQIEKLsDKVVASVKEGVqgplnvslseeGKSQ 1193
Cdd:PRK02224 324 EELRDRLEECRVAAQAHNEEAESLRED--------ADDLEERAEELREEAAEL-ESELEEAREAV-----------EDRR 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1194 EQILEIlrfiRREKEIAETRFEVAQVESLRYRQRVELLERELQELEDSLNAEREKVQVTAKTMAQHEELM---KKTETMN 1270
Cdd:PRK02224 384 EEIEEL----EEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLeagKCPECGQ 459
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1271 VV-----METNKMLREEKERLEQDLQQMQAKVRKLELDILPLQEAnAELSEKSGMLQAEKKLLEE--DVKRWKARNQHLV 1343
Cdd:PRK02224 460 PVegsphVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDL-VEAEDRIERLEERREDLEEliAERRETIEEKRER 538
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1344 SQQKDPDTEEYRkllSEKEVHTKRIQQLTEEIGRLKAEIARSNASLTNNQNLIQSLkedlNKVRTEKETIQkDLDAKIID 1423
Cdd:PRK02224 539 AEELRERAAELE---AEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESL----ERIRTLLAAIA-DAEDEIER 610
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1424 IQEKVKTITQVKKIGRryktqyEELKAQQDKVMETSAQSSGDhqeqhvSVQEMQELKETLnqaetkskslESQVENLQKT 1503
Cdd:PRK02224 611 LREKREALAELNDERR------ERLAEKRERKRELEAEFDEA------RIEEAREDKERA----------EEYLEQVEEK 668
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....
gi 633226 1504 LSEKETEARNLQEQTVQLQSELSRL------RQDLQDRTTQEEQLRQQITEKEE 1551
Cdd:PRK02224 669 LDELREERDDLQAEIGAVENELEELeelrerREALENRVEALEALYDEAEELES 722
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
291-511 |
6.70e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 6.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 291 SAADDSEAKSNELTRAVEELHKLLKEAGEANKAIQDHLLEVEQSKDQMeKEMLEKIGRLEKELENANDLLSATKRKGAIL 370
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRI-AALARRIRALEQELAALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 371 SEEELAAMSPTAAAVAKIVKPGM--KLTELYNAYVETQDQLLLEKLenKRINKYLDEIVKEVEAKAPILKRQREEYERAQ 448
Cdd:COG4942 96 RAELEAQKEELAELLRALYRLGRqpPLALLLSPEDFLDAVRRLQYL--KYLAPARREQAEELRADLAELAALRAELEAER 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 633226 449 KAVASLSVKLEQAMKEIQRLQEDTDKA----NKQSSVLERDNRRMEIQVKDLSQQIRVLLMELEEAR 511
Cdd:COG4942 174 AELEALLAELEEERAALEALKAERQKLlarlEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1350-1645 |
6.72e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 45.11 E-value: 6.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1350 DTEEYRKLLSEKEVHTKRIQQLTEEIGRLKAEIARSNASLTNNQNLIQSLKEDLNKVRTEketiqkdldakiidiqEKVK 1429
Cdd:pfam17380 297 EQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQE----------------ERKR 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1430 TITQVKKigrryktqyEELKAQQDKVMETSAQSSGDHQEQHVSVQEMQELKETLNQAETKSKSLESQVENLQKTLSEKEt 1509
Cdd:pfam17380 361 ELERIRQ---------EEIAMEISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQE- 430
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1510 EARNLQEQTVQLQS--ELSRLRQDLQDRTTQEEQLRQQiteKEEKTRKAIVAAKSKIAHLAGVKDQLTKENEELKQRNGA 1587
Cdd:pfam17380 431 EARQREVRRLEEERarEMERVRLEEQERQQQVERLRQQ---EEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQA 507
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 633226 1588 LDQQKD-------ELDVRITALKSQYEGRISRLERElrehQERHLEQRDEPQEPSNKVPEQQRQI 1645
Cdd:pfam17380 508 MIEEERkrkllekEMEERQKAIYEEERRREAEEERR----KQQEMEERRRIQEQMRKATEERSRL 568
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
413-1206 |
7.95e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 45.04 E-value: 7.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 413 KLENKRINKYLDEIVKEVEAKAPilKRQREEYERAQKAVASLSVKLEQAMKEIQRLQEDTDKANKQSSVLERDNRRMEIQ 492
Cdd:TIGR00606 278 KKQMEKDNSELELKMEKVFQGTD--EQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQ 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 493 VKDLSQQIRVLLMELEEargNHVIRDEEVSSADISSSSEVISQHLVSYRNIEELQQQNQRLLVALRE---LGETREREEQ 569
Cdd:TIGR00606 356 ADRHQEHIRARDSLIQS---LATRLELDGFERGPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSkerLKQEQADEIR 432
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 570 ETTSSKITELQLKLESALTELEQLRKSRQHQMQLVDSivrqrdMYRILLSQTTGVAIPLHASSLDDVSLASTPKRPSTSQ 649
Cdd:TIGR00606 433 DEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGS------SDRILELDQELRKAERELSKAEKNSLTETLKKEVKSL 506
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 650 TVstpapvpviESTEAIEAKAALKQLQEIFENYKKEKAENEKIQNEQLEKlQEQVTDLRSQNTKISTQLDFASKRYEMLQ 729
Cdd:TIGR00606 507 QN---------EKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDK-DEQIRKIKSRHSDELTSLLGYFPNKKQLE 576
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 730 DNVEGYRREITSLHERNQKLTATTQKQEQIINTMTQDLRGANEKLAVAEVRAENLKKEKEMlklsEVRLSQQRESLLAEQ 809
Cdd:TIGR00606 577 DWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDE----ESDLERLKEEIEKSS 652
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 810 RGQNLLLTNLQTIQGILERSETETKQ--RLSSQIEKLEHEISHLKKKLENEVEQRHTLTRNLDVQLLDTKRQLDTETNLH 887
Cdd:TIGR00606 653 KQRAMLAGATAVYSQFITQLTDENQSccPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLA 732
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 888 LNTKELLKNAQKEIATLKQHLSNMEVQVASQSSQRTgkgqpSNKEDVDDLVSQLRQTEEQVNDLK--ERLKTSTSNVEQY 965
Cdd:TIGR00606 733 PGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIE-----EQETLLGTIMPEEESAKVCLTDVTimERFQMELKDVERK 807
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 966 QAMVTSLEESLNKEKQVTEeVRKNIEvrlkesaEFQTQLEKKLMEVEkEKQELQDDKRRAIESMEQQLSELKktlsSVQN 1045
Cdd:TIGR00606 808 IAQQAAKLQGSDLDRTVQQ-VNQEKQ-------EKQHELDTVVSKIE-LNRKLIQDQQEQIQHLKSKTNELK----SEKL 874
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1046 EVQEALQRASTAlsnEQQARRDCQEQAKIAVEAQNKYERELMLHAADVEALQAAKEQVSKMasvrqhlEETTQKAESQLL 1125
Cdd:TIGR00606 875 QIGTNLQRRQQF---EEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSK-------ETSNKKAQDKVN 944
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1126 ECKASWEERERMLKDEVSKCVCRCEDLEKQnrllhdqieklsdkvvasvKEGVQGPLNVSLSEEGKSQEQILEILRFIRR 1205
Cdd:TIGR00606 945 DIKEKVKNIHGYMKDIENKIQDGKDDYLKQ-------------------KETELNTVNAQLEECEKHQEKINEDMRLMRQ 1005
|
.
gi 633226 1206 E 1206
Cdd:TIGR00606 1006 D 1006
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
51-325 |
7.96e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 44.53 E-value: 7.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 51 EQQYFEIEKRlshsQERLVNE-TRECQSLRLELEKLNNQLKALTEKNKeleiaqdrniaiqsqfTRTKEELEAEKRDLIR 129
Cdd:PRK05771 27 ELGVVHIEDL----KEELSNErLRKLRSLLTKLSEALDKLRSYLPKLN----------------PLREEKKKVSVKSLEE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 130 TNERLSQELEYLTEDVKRLNEKLKESNTTKGELQLKLDELQ-----ASDVSVKYREKRLEQ------EKELLHSQNTWLN 198
Cdd:PRK05771 87 LIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERLEpwgnfDLDLSLLLGFKYVSVfvgtvpEDKLEELKLESDV 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 199 TELKTKTDE------LLALGREKGNEILELKCNLENKKEEVS---RLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQqa 269
Cdd:PRK05771 167 ENVEYISTDkgyvyvVVVVLKELSDEVEEELKKLGFERLELEeegTPSELIREIKEELEEIEKERESLLEELKELAKK-- 244
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 633226 270 smEEKFHneLNAHIKLSNLYKSAaddsEAKSNELT-------------RAVEELHKLLKEAGEANKAIQ 325
Cdd:PRK05771 245 --YLEEL--LALYEYLEIELERA----EALSKFLKtdktfaiegwvpeDRVKKLKELIDKATGGSAYVE 305
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
780-1421 |
8.00e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.13 E-value: 8.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 780 RAENLKKEKEMLKLSEVRLS---QQRESLLAEQRGQNLLLTNLQTIQGILERSETETKQRLSSQIEKLEH--EISHLKKK 854
Cdd:PTZ00121 1244 KAEEERNNEEIRKFEEARMAhfaRRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEakKADEAKKK 1323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 855 LENEVEQRHTLTRNLDvqllDTKRQLDTETNLHLNTKELLKNAQK--EIATLKQHLSNMEVQVASQSSQRTGKGQPSNK- 931
Cdd:PTZ00121 1324 AEEAKKKADAAKKKAE----EAKKAAEAAKAEAEAAADEAEAAEEkaEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKk 1399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 932 -EDVDDLVSQLRQTEEQVNDLKErLKTSTSNVEQYQAMVTSLEESlnkeKQVTEEVRKNIEVRLKESAEFQTQLEKKLME 1010
Cdd:PTZ00121 1400 aEEDKKKADELKKAAAAKKKADE-AKKKAEEKKKADEAKKKAEEA----KKADEAKKKAEEAKKAEEAKKKAEEAKKADE 1474
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1011 VEKEKQELQ--DDKRRAIESMEQQLSELKKtlSSVQNEVQEALQRASTALSNEQQARRDCQEQAKIAVEAQNKYERELML 1088
Cdd:PTZ00121 1475 AKKKAEEAKkaDEAKKKAEEAKKKADEAKK--AAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELK 1552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1089 HAADV-------EALQAAKEQVSKMASVRQhLEETTQKAESQLLECKASWEERERMLKDEVSKC---VCRCEDLEKQNRL 1158
Cdd:PTZ00121 1553 KAEELkkaeekkKAEEAKKAEEDKNMALRK-AEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAeeaKIKAEELKKAEEE 1631
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1159 lHDQIEKLSDKVVASVKEGVQ-----GPLNVSLSEEGKSQEQILEILRFIRREKEIAETRFEVA--QVESLRYRQRVELL 1231
Cdd:PTZ00121 1632 -KKKVEQLKKKEAEEKKKAEElkkaeEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALkkEAEEAKKAEELKKK 1710
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1232 ERELQELEDSLNAEREKVQVTAktmaqhEELMKKTETMNVVMETNKMLREEKERLEQDLQQMQAKVRKLELDILPLQEAN 1311
Cdd:PTZ00121 1711 EAEEKKKAEELKKAEEENKIKA------EEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEE 1784
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1312 AELSEKSGMLQAEKKLLE-----EDVKRWKARNQHLVSQQKDPDTEEYRKLLSEKEV---HTKRIQQLTEEIGRLKAEIA 1383
Cdd:PTZ00121 1785 LDEEDEKRRMEVDKKIKDifdnfANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMqleEADAFEKHKFNKNNENGEDG 1864
|
650 660 670
....*....|....*....|....*....|....*...
gi 633226 1384 RSNASLTNNQNLIQSLKEDLNKVRTEKETIQKDLDAKI 1421
Cdd:PTZ00121 1865 NKEADFNKEKDLKEDDEEEIEEADEIEKIDKDDIEREI 1902
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
77-366 |
8.07e-04 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 43.75 E-value: 8.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 77 SLRLELEKLNNQLKALTEKNKELEIAQDRNIAIQSQFTRTKEELEAEKRDLIRTNERLSQELEYLTEDVKRLNEKLKESN 156
Cdd:COG1340 5 ELSSSLEELEEKIEELREEIEELKEKRDELNEELKELAEKRDELNAQVKELREEAQELREKRDELNEKVKELKEERDELN 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 157 TTKGELQLKLDELQASDVSVKYREKRLEQEKELLHSqntwLNTELKTKTdellaLGREKGNEILelkcnlenkkEEVSRL 236
Cdd:COG1340 85 EKLNELREELDELRKELAELNKAGGSIDKLRKEIER----LEWRQQTEV-----LSPEEEKELV----------EKIKEL 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 237 EEQMNGLKTSNEhLQKHVEDLLTKLKEAKEQQasmeEKFHNELnahiklsnlyKSAADDSEAKSNELTRAVEELHKLLKE 316
Cdd:COG1340 146 EKELEKAKKALE-KNEKLKELRAELKELRKEA----EEIHKKI----------KELAEEAQELHEEMIELYKEADELRKE 210
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 633226 317 AGEANKAIQDHLLEVEQSKDQmEKEMLEKIGRLEKELENANDLLSATKRK 366
Cdd:COG1340 211 ADELHKEIVEAQEKADELHEE-IIELQKELRELRKELKKLRKKQRALKRE 259
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
1396-1661 |
9.02e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 44.43 E-value: 9.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1396 IQSLKEDLNKVRTEKETIQKDLDAKIIDIQEKVKTITQVKKIGRRYKTQYEELK-----------AQQDKVMETSAQSSg 1464
Cdd:pfam10174 242 ISSLERNIRDLEDEVQMLKTNGLLHTEDREEEIKQMEVYKSHSKFMKNKIDQLKqelskkesellALQTKLETLTNQNS- 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1465 dHQEQHVSVqemqeLKETLNQAETKSKSLESQVENLQKTLSEKETEARNLQEQTVQLQSELSRLRQDLQDrttqeeqLRQ 1544
Cdd:pfam10174 321 -DCKQHIEV-----LKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKSTLAGEIRD-------LKD 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1545 QITEKEektRKAIVAAKsKIAHLAGVKDQLTKENEELKQRNGALDQQKDELDVRITALK---SQYEGRISRL----EREL 1617
Cdd:pfam10174 388 MLDVKE---RKINVLQK-KIENLQEQLRDKDKQLAGLKERVKSLQTDSSNTDTALTTLEealSEKERIIERLkeqrERED 463
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 633226 1618 REHQERHLEQRDEPQEPSNKVPEQQRQITLKTTPASGERGIAST 1661
Cdd:pfam10174 464 RERLEELESLKKENKDLKEKVSALQPELTEKESSLIDLKEHASS 507
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
965-1380 |
1.04e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.37 E-value: 1.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 965 YQAMVTSLEESLNKEKQvtEEVRKNIEVRLKESAEFQtQLEKKLMEVEKEKQELQDdKRRAIESMEQQLSELKKTLSSVQ 1044
Cdd:COG4717 40 LAFIRAMLLERLEKEAD--ELFKPQGRKPELNLKELK-ELEEELKEAEEKEEEYAE-LQEELEELEEELEELEAELEELR 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1045 NEVqEALQRASTALSNEQQARRDCQEQAKIAVEAQNKYERELMLHAADVEALQAAKEQVSKMASVRQHLEETTQKAESQL 1124
Cdd:COG4717 116 EEL-EKLEKLLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEEL 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1125 LECKASWEE---RERMLKDEVSKCVCRCEDLEKQ------NRLLHDQIEKLSDKVVASVKEGVQGPLNVSLSEEGKSQEQ 1195
Cdd:COG4717 195 QDLAEELEElqqRLAELEEELEEAQEELEELEEEleqlenELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILT 274
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1196 ILEIL-----------RFIRREKEIAETRFEVAQVESLRYRQRVELLERELQELEDSLNAEREKVQVTAKTMAQHEELMK 1264
Cdd:COG4717 275 IAGVLflvlgllallfLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLR 354
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1265 KTETMNVVMETNKMLREEKERLE-----------------QDLQQMQAKVRKLELDILPLQEAN---------AELSEKS 1318
Cdd:COG4717 355 EAEELEEELQLEELEQEIAALLAeagvedeeelraaleqaEEYQELKEELEELEEQLEELLGELeellealdeEELEEEL 434
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 633226 1319 GMLQAEKKLLEEDVKRWKARNQHLVSQQKD-PDTEEYRKLLSEKEVHTKRIQQLTEEIGRLKA 1380
Cdd:COG4717 435 EELEEELEELEEELEELREELAELEAELEQlEEDGELAELLQELEELKAELRELAEEWAALKL 497
|
|
| FPP |
pfam05911 |
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant ... |
181-282 |
1.06e-03 |
|
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant proteins that are filament-like. It interacts with the nuclear envelope-associated protein, MAF1, the WPP family pfam13943.
Pssm-ID: 461778 [Multi-domain] Cd Length: 859 Bit Score: 44.28 E-value: 1.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 181 KRLEQEKELLHSQNTWLNTELKTKTDELLALG---REKGNEILELKCNLENKKEEVSRLEEQMNGLKTSNEHLQKHVEDL 257
Cdd:pfam05911 684 KRLKEEFEQLKSEKENLEVELASCTENLESTKsqlQESEQLIAELRSELASLKESNSLAETQLKCMAESYEDLETRLTEL 763
|
90 100
....*....|....*....|....*
gi 633226 258 LTKLKEAKEQQASMEEKFHNELNAH 282
Cdd:pfam05911 764 EAELNELRQKFEALEVELEEEKNCH 788
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
1242-1406 |
1.17e-03 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 44.25 E-value: 1.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1242 LNAEREKVQVTAKTMAQHEELMKKTE-TMNVVMETNKMLREEKERLEQDLqqmqaKVRKLELDILPLQEANaeLSEKSGM 1320
Cdd:pfam05667 337 LEELQEQLEDLESSIQELEKEIKKLEsSIKQVEEELEELKEQNEELEKQY-----KVKKKTLDLLPDAEEN--IAKLQAL 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1321 LQAEKKLLEEDVKRWKARnqhlvsqqKDPDTEEYRKLLSEKEVHTKRIQQLTEEIGRLKAEIARSNASLTNNQNLIQSLK 1400
Cdd:pfam05667 410 VDASAQRLVELAGQWEKH--------RVPLIEEYRALKEAKSNKEDESQRKLEEIKELREKIKEVAEEAKQKEELYKQLV 481
|
....*.
gi 633226 1401 EDLNKV 1406
Cdd:pfam05667 482 AEYERL 487
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1246-1645 |
1.22e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.18 E-value: 1.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1246 REKVQVTAKTMAQHEELMkkTETMNVVmeTNKMLREEKER---LEQDL---QQMQAKVRKLELDilplQEANAELSEKSG 1319
Cdd:PRK04863 246 LEAIRVTQSDRDLFKHLI--TESTNYV--AADYMRHANERrvhLEEALelrRELYTSRRQLAAE----QYRLVEMARELA 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1320 MLQAEKKLLEEDvkrWKARNQHLVSqqkdpdteeyrkllsekeVHTKRIQQltEEIGRLKAEIARSNASLTNNQNLIQSL 1399
Cdd:PRK04863 318 ELNEAESDLEQD---YQAASDHLNL------------------VQTALRQQ--EKIERYQADLEELEERLEEQNEVVEEA 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1400 KEDLNKVRTEKETIQKDLD---AKIIDIQEKVktITQVKKIG--RRYKTQYEELKAQQDkVMETSAQSSGDHQEQHVSvq 1474
Cdd:PRK04863 375 DEQQEENEARAEAAEEEVDelkSQLADYQQAL--DVQQTRAIqyQQAVQALERAKQLCG-LPDLTADNAEDWLEEFQA-- 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1475 EMQELKETLNQAETKSKSLE----------------------SQVENLQKTLSEKETEARNLQEQTVQLQSELSRLRQDL 1532
Cdd:PRK04863 450 KEQEATEELLSLEQKLSVAQaahsqfeqayqlvrkiagevsrSEAWDVARELLRRLREQRHLAEQLQQLRMRLSELEQRL 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1533 QDRTTQeEQLRQQITEKEEKTRKAIVAAKSKIAHLAGVKDQLTKENEELKQRNGALDQQKDELDVRITALKSQ------Y 1606
Cdd:PRK04863 530 RQQQRA-ERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARapawlaA 608
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 633226 1607 EGRISRLERELREHQE----------RHLEQRDEPQEPSNKVPEQQRQI 1645
Cdd:PRK04863 609 QDALARLREQSGEEFEdsqdvteymqQLLERERELTVERDELAARKQAL 657
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
984-1506 |
1.26e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.99 E-value: 1.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 984 EEVRKNIEVRLKESAEFQTQLEKKLMEVEKEKQELQDdKRRAIESMEQQLSELKKTLSSVQNEVQEaLQRASTALSNEQQ 1063
Cdd:COG4717 49 ERLEKEADELFKPQGRKPELNLKELKELEEELKEAEE-KEEEYAELQEELEELEEELEELEAELEE-LREELEKLEKLLQ 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1064 ARRDCQEQAKIAVEAQNKYERelmLHAADvEALQAAKEQVSKMASVRQHLEETTQKAESQLLECKASWEERERMLKDEVS 1143
Cdd:COG4717 127 LLPLYQELEALEAELAELPER---LEELE-ERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELE 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1144 KCVCRCEDLEKQNRLLHDQIEKLSDKVVASVKEGVQGPLNVSLSEEGKSQEQILEILRFIRREKEIAETRFEVAQVESLR 1223
Cdd:COG4717 203 ELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLV 282
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1224 YRQRVELLERELQELEDSLNAEREKVQVTAKTMAQHEELMKKTETMNVVMETNKMLREEKERLEQDLQQMQAKVRKL--E 1301
Cdd:COG4717 283 LGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELeeE 362
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1302 LDILPLQEANAELSEKSGMlqaekklleedvkrwkarnqhlvsqqkdPDTEEYRKLLSEKEvhtkRIQQLTEEIGRLKAE 1381
Cdd:COG4717 363 LQLEELEQEIAALLAEAGV----------------------------EDEEELRAALEQAE----EYQELKEELEELEEQ 410
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1382 IARSNASLTNNQNLIQ--SLKEDLNKVRTEKETIQKDLDAKIIDIQEKVKTITQVKKIGRryktqYEELKAQQdkvmets 1459
Cdd:COG4717 411 LEELLGELEELLEALDeeELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGE-----LAELLQEL------- 478
|
490 500 510 520
....*....|....*....|....*....|....*....|....*..
gi 633226 1460 aqssgdhqeqhvsvqemQELKETLNQAETKSKSLESQVENLQKTLSE 1506
Cdd:COG4717 479 -----------------EELKAELRELAEEWAALKLALELLEEAREE 508
|
|
| Filament |
pfam00038 |
Intermediate filament protein; |
765-1087 |
1.31e-03 |
|
Intermediate filament protein;
Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 43.37 E-value: 1.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 765 QDLRGANEKLAVAEVRAENLKKEKEMLklsEVRLSQQRESLLAEQRG-QNLLLTNLQTIQGILERSETEtKQRLSSQIEK 843
Cdd:pfam00038 4 EQLQELNDRLASYIDKVRFLEQQNKLL---ETKISELRQKKGAEPSRlYSLYEKEIEDLRRQLDTLTVE-RARLQLELDN 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 844 LEHEISHLKKKLENEVEQRhtltRNLDVQLLDTKRQLDTETnlhLNTKELlknaQKEIATLKqhlsnmevqvasqssqrt 923
Cdd:pfam00038 80 LRLAAEDFRQKYEDELNLR----TSAENDLVGLRKDLDEAT---LARVDL----EAKIESLK------------------ 130
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 924 gkgqpsnkedvDDLVSQLRQTEEQVNDLKERLKTSTSNVEQYQAMVTSLEESLNKEKQVTEEvrknIEVRLKESAE--FQ 1001
Cdd:pfam00038 131 -----------EELAFLKKNHEEEVRELQAQVSDTQVNVEMDAARKLDLTSALAEIRAQYEE----IAAKNREEAEewYQ 195
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1002 TQLEKKLMEVEKEKQELQDDK------RRAIESMEQQLSELKKTLSSVQNEVQEALQRASTALSNEQQARRDCQEQ---A 1072
Cdd:pfam00038 196 SKLEELQQAAARNGDALRSAKeeitelRRTIQSLEIELQSLKKQKASLERQLAETEERYELQLADYQELISELEAElqeT 275
|
330
....*....|....*
gi 633226 1073 KIAVEAQNKYERELM 1087
Cdd:pfam00038 276 RQEMARQLREYQELL 290
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
413-1069 |
1.48e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 43.91 E-value: 1.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 413 KLENKRINKYLDEivKEVEAKAPILKRQREEYERAQKAVASL---------SVKLEQAMKEIQRLQEDTDKANKQSSVLE 483
Cdd:COG5022 825 TIKREKKLRETEE--VEFSLKAEVLIQKFGRSLKAKKRFSLLkketiylqsAQRVELAERQLQELKIDVKSISSLKLVNL 902
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 484 RDnrrmEIQVKDLSQQIRVLLMELEEARGNHVIRDEEVSSADISSSSEVISQHlvSYRNIEELQQQNqrllvalrelget 563
Cdd:COG5022 903 EL----ESEIIELKKSLSSDLIENLEFKTELIARLKKLLNNIDLEEGPSIEYV--KLPELNKLHEVE------------- 963
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 564 rereeqettsSKITELQLKLESALTELEQLRKSRQHQMQLVDSIVRQRDMYRILLSqttgvAIPLHASSLDDVSLASTPK 643
Cdd:COG5022 964 ----------SKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYG-----ALQESTKQLKELPVEVAEL 1028
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 644 RPSTSQTVSTPApvpviesTEAIEAKAA-LKQLQEIFENYKKEKAENEKIQNEQLEKLQEQVTDLRSQNTKISTqldFAS 722
Cdd:COG5022 1029 QSASKIISSEST-------ELSILKPLQkLKGLLLLENNQLQARYKALKLRRENSLLDDKQLYQLESTENLLKT---INV 1098
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 723 KRYEMLQDNVEGYRREITSLHERNQKLTATTQKQEqIINTMTQDLRGANEKLAVAEVRAENLKKEKEMlklsEVRLSQQR 802
Cdd:COG5022 1099 KDLEVTNRNLVKPANVLQFIVAQMIKLNLLQEISK-FLSQLVNTLEPVFQKLSVLQLELDGLFWEANL----EALPSPPP 1173
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 803 ESLLAEQRgqnLLLTNLQTIQGILERSETETKQRLSSQIEKLEHEISHLKKKL-ENEVEQRH------TLTRNLDVQLLD 875
Cdd:COG5022 1174 FAALSEKR---LYQSALYDEKSKLSSSEVNDLKNELIALFSKIFSGWPRGDKLkKLISEGWVpteystSLKGFNNLNKKF 1250
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 876 TKRQLDTETNLHLNTKEL-----LKNAQKEI--ATLKQHLSNMEVQVASQSSQRTGKGQPSNKEDVDDLVSQLRQTEEQ- 947
Cdd:COG5022 1251 DTPASMSNEKLLSLLNSIdnllsSYKLEEEVlpATINSLLQYINVGLFNALRTKASSLRWKSATEVNYNSEELDDWCREf 1330
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 948 -VNDLKERLKtstsNVEQYQAMVTSLEESLNKEKQVTEEVR--KNIEVR-LKES---AEFQTQLEKKLME-----VEKEK 1015
Cdd:COG5022 1331 eISDVDEELE----ELIQAVKVLQLLKDDLNKLDELLDACYslNPAEIQnLKSRydpADKENNLPKEILKkiealLIKQE 1406
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*..
gi 633226 1016 QELQDDKRRAIESMEQQLSELKKTLSSVQNEV---QEALQRASTALSNEQQARRDCQ 1069
Cdd:COG5022 1407 LQLSLEGKDETEVHLSEIFSEEKSLISLDRNSiykEEVLSSLSALLTKEKIALLDRK 1463
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1274-1496 |
1.58e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.85 E-value: 1.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1274 ETNKMLREEKERLEQDLQQMQAKVR--KLELDILPLQEANAELSEKSGMLQAEKKLLEEDVKRWKARNQHLVSQQKDPDT 1351
Cdd:COG3206 175 KALEFLEEQLPELRKELEEAEAALEefRQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPD 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1352 EEYRKLLSEkevhtkRIQQLTEEIGRLKAEIARSNASLTNNQNLIQSLKEDLNKVRTEketIQKDLDAKIIDIQEKVKTI 1431
Cdd:COG3206 255 ALPELLQSP------VIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQ---LQQEAQRILASLEAELEAL 325
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 633226 1432 tqvkkigrryKTQYEELKAQQDKVMETSAQSSGDHQEQHVSVQEMQELKETLNQAETKSKSLESQ 1496
Cdd:COG3206 326 ----------QAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEARLA 380
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
1498-1619 |
1.61e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 43.54 E-value: 1.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1498 ENLQKTLSEKETEARNLQEQTVQLQSELSRLRQDLQDRTTQEEQLRQQITEKEEKTRKAIVAAKskIAHLAGVKDQLTKE 1577
Cdd:PRK12705 33 KEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQLDAR--AEKLDNLENQLEER 110
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 633226 1578 NEELKQRNGALDQQKDELD---VRITALkSQYEGR---ISRLERELRE 1619
Cdd:PRK12705 111 EKALSARELELEELEKQLDnelYRVAGL-TPEQARkllLKLLDAELEE 157
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
930-1098 |
1.63e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.85 E-value: 1.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 930 NKEDVDDLVSQLRQTEEQVNDLKERLKTSTSNVEQYQAMVTSLEESLNKEKQVTEEVRKNIEVRlkesaefqtQLEKKLM 1009
Cdd:COG3206 203 QKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQ---------QLRAQLA 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1010 EVEKEKQELQ---DDKRRAIESMEQQLSELKKTLSSVQNEVQEALQRASTALSNEQQARRDCQEQAKIAVEAQNKYEREL 1086
Cdd:COG3206 274 ELEAELAELSaryTPNHPDVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAEL 353
|
170
....*....|..
gi 633226 1087 MLHAADVEALQA 1098
Cdd:COG3206 354 RRLEREVEVARE 365
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
132-316 |
1.81e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 1.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 132 ERLSQELEYLTEDVKRLNEKLKESNTTKGELQ------LKLDELQASDVSVKYREKRLEQ-EKELlhsqntwlnTELKTK 204
Cdd:COG4913 613 AALEAELAELEEELAEAEERLEALEAELDALQerrealQRLAEYSWDEIDVASAEREIAElEAEL---------ERLDAS 683
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 205 TDELLALGREkgneilelkcnLENKKEEVSRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKF----HNELN 280
Cdd:COG4913 684 SDDLAALEEQ-----------LEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLArlelRALLE 752
|
170 180 190
....*....|....*....|....*....|....*.
gi 633226 281 AHIKLSNLYKSAADDSEAKSNELTRAVEELHKLLKE 316
Cdd:COG4913 753 ERFAAALGDAVERELRENLEERIDALRARLNRAEEE 788
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
1284-1640 |
2.09e-03 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 43.50 E-value: 2.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1284 ERLEQDLQQMQAKVRKLELDIlplqeanaelSEKSGMLQAEKKLLEEDVKR--------------WKARNQHLVSQQKDP 1349
Cdd:PTZ00108 1002 GKLERELARLSNKVRFIKHVI----------NGELVITNAKKKDLVKELKKlgyvrfkdiikkksEKITAEEEEGAEEDD 1071
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1350 D------------TEEYRKLLSekevhtKRIQQLTEE-IGRLKAEIARSNASLTN--NQNLIQSLKEDLNKVRTEKETIQ 1414
Cdd:PTZ00108 1072 EaddeddeeelgaAVSYDYLLS------MPIWSLTKEkVEKLNAELEKKEKELEKlkNTTPKDMWLEDLDKFEEALEEQE 1145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1415 KDLDAKIIDIQEKVKTITQVKKIGRRYKTQYEELKAQQDKVMETSAQSSGDHQEQHVSVQEMQELKETLNQAETKSKSLE 1494
Cdd:PTZ00108 1146 EVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQ 1225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1495 SQVENLQKTLSEKETEARNLQEQTVQLQSELS---RLRQDLQDRTTQEEQLR-------QQITEKEEKTRKAIVAAKSKI 1564
Cdd:PTZ00108 1226 EDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNdefSSDDLSKEGKPKNAPKRvsavqysPPPPSKRPDGESNGGSKPSSP 1305
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 633226 1565 AHlAGVKDQLTKENEELKQRNGAldQQKDELDVRITALKSQYEGR-ISRLERELREHQERHLEQRDEPQEPSNKVPE 1640
Cdd:PTZ00108 1306 TK-KKVKKRLEGSLAALKKKKKS--EKKTARKKKSKTRVKQASASqSSRLLRRPRKKKSDSSSEDDDDSEVDDSEDE 1379
|
|
| DUF5585 |
pfam17823 |
Family of unknown function (DUF5585); This is a family of unknown function found in chordata. |
1640-1877 |
2.10e-03 |
|
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
Pssm-ID: 465521 [Multi-domain] Cd Length: 506 Bit Score: 43.02 E-value: 2.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1640 EQQRQITLKTTPASGErgiaSTSDPPTANIKPTPVVSTPSKV---TAAAMAG----NKSTPRASIRPMVTPATVTNPTTT 1712
Cdd:pfam17823 89 EHTPHGTDLSEPATRE----GAADGAASRALAAAASSSPSSAaqsLPAAIAAlpseAFSAPRAAACRANASAAPRAAIAA 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1713 PTA----TVMPTTQVESQEAMQSEGPVEHVPVFGSTS---------GSVRSTSPNVQPSISQ-----PILTVQQQTQATA 1774
Cdd:pfam17823 165 ASAphaaSPAPRTAASSTTAASSTTAASSAPTTAASSapatltparGISTAATATGHPAAGTalaavGNSSPAAGTVTAA 244
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1775 FVQPTQQSHPQIEPANQELSSNIVEVVQSSPVER---PSTSTAVfGTVSATPSSSLpkrtREEEEDSTIEAS-DQVSDDT 1850
Cdd:pfam17823 245 VGTVTPAALATLAAAAGTVASAAGTINMGDPHARrlsPAKHMPS-DTMARNPAAPM----GAQAQGPIIQVStDQPVHNT 319
|
250 260
....*....|....*....|....*..
gi 633226 1851 VEMPLPKKLKSVTPVGTEEEVMAEEST 1877
Cdd:pfam17823 320 AGEPTPSPSNTTLEPNTPKSVASTNLA 346
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
1649-1825 |
2.47e-03 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 43.37 E-value: 2.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1649 TTPASGERGIASTSDPPTAN-IKPTPVVSTPSKVTAAAMAGNKSTPRASIRPmvtpaTVTNPTTTPTATVMPTTQVESQE 1727
Cdd:pfam05109 535 TSPTLGKTSPTSAVTTPTPNaTSPTPAVTTPTPNATIPTLGKTSPTSAVTTP-----TPNATSPTVGETSPQANTTNHTL 609
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1728 AMQSEGPVEHVPVFGSTSG---------SVRSTSPNVQPSISQPILTVQQQTQATAFVQPTQQSHP-------QIEPAnq 1791
Cdd:pfam05109 610 GGTSSTPVVTSPPKNATSAvttgqhnitSSSTSSMSLRPSSISETLSPSTSDNSTSHMPLLTSAHPtggenitQVTPA-- 687
|
170 180 190
....*....|....*....|....*....|....
gi 633226 1792 elSSNIVEVVQSSPVERPSTSTAVFGTVSATPSS 1825
Cdd:pfam05109 688 --STSTHHVSTSSPAPRPGTTSQASGPGNSSTST 719
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
51-548 |
2.54e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 43.03 E-value: 2.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 51 EQQYFEIEKRLSHSQERLVNETRECQSLRLELEKLNNQLKALTEKNKELEIAQD--RNIAIQSQFTRTKEELEAEKRDLI 128
Cdd:TIGR00618 238 TQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKaaPLAAHIKAVTQIEQQAQRIHTELQ 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 129 RTNERLSQELEYLTEDVKRLNEKLKESNTTKGELQLKLDELQASDVSVKYREKrLEQEKELLHSQNTW------LNTELK 202
Cdd:TIGR00618 318 SKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREI-SCQQHTLTQHIHTLqqqkttLTQKLQ 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 203 TKTDELLALGREKGnEILELKCNLENKKEEVSRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKFHNELNAH 282
Cdd:TIGR00618 397 SLCKELDILQREQA-TIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQL 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 283 IKLSNLYKSAADDSEAKSNELTRAVEELHKLLKEAGEANKAIQD-HLLEVEQSKDQmekEMLEKIGRLEKELENANDLLS 361
Cdd:TIGR00618 476 QTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDiDNPGPLTRRMQ---RGEQTYAQLETSEEDVYHQLT 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 362 ATKRKGAILSEEELAAMSPTaaavakivkpgMKLTELYNAYVETQDQLLleklenKRINKYLDEIVKEVEAKAPILKRQR 441
Cdd:TIGR00618 553 SERKQRASLKEQMQEIQQSF-----------SILTQCDNRSKEDIPNLQ------NITVRLQDLTEKLSEAEDMLACEQH 615
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 442 EEYERAQKAVASLSVKLEQAMKEIQRLQEDTDKANKQSSVLERDNR---RMEIQVKDLSQQIRVLLMELEEARGNHVIRD 518
Cdd:TIGR00618 616 ALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVRehaLSIRVLPKELLASRQLALQKMQSEKEQLTYW 695
|
490 500 510
....*....|....*....|....*....|
gi 633226 519 EEVSSADISSSSEVISQHLVSYRNIEELQQ 548
Cdd:TIGR00618 696 KEMLAQCQTLLRELETHIEEYDREFNEIEN 725
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
667-1036 |
2.72e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.02 E-value: 2.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 667 EAKAALKQLQEIFENYKKEKAENEkiqnEQLEKLQEQVTDLRSQNTKISTQLDFASKRYEMLQDNVEGYRR-----EITS 741
Cdd:PRK04863 359 ELEERLEEQNEVVEEADEQQEENE----ARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERakqlcGLPD 434
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 742 LHERN-QKLTATTQKQEQiinTMTQDLRGANEKLAVAEVRAENLKKEKEMLK-----LSEVRLSQQRESLLAEQRGQNLL 815
Cdd:PRK04863 435 LTADNaEDWLEEFQAKEQ---EATEELLSLEQKLSVAQAAHSQFEQAYQLVRkiageVSRSEAWDVARELLRRLREQRHL 511
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 816 LTNLQTIQGILersetetkqrlssqiekleheishlkkkleNEVEQRHTLTRNLDVQLLDTKRQLdtetNLHLNTKELLK 895
Cdd:PRK04863 512 AEQLQQLRMRL------------------------------SELEQRLRQQQRAERLLAEFCKRL----GKNLDDEDELE 557
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 896 NAQKEIATLKQHLSnmevqvasqssqrtgkgqpSNKEDVDDLVSQLRQTEEQVNDLKERLKTSTSNVEQYQAMVTSLEEs 975
Cdd:PRK04863 558 QLQEELEARLESLS-------------------ESVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLRE- 617
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 633226 976 lnkekQVTEEVrknievrlkESAEFQTQLEKKLMEVEKEKQELQDDKRRAIESMEQQLSEL 1036
Cdd:PRK04863 618 -----QSGEEF---------EDSQDVTEYMQQLLERERELTVERDELAARKQALDEEIERL 664
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
29-267 |
2.74e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 2.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 29 LADQQSEIDGLKGRH---EKFKVESEQQYFEIEKRLSHSQeRLVNETREC---QSLRLELEKLNNQLKALTEKNKELEIA 102
Cdd:COG4913 612 LAALEAELAELEEELaeaEERLEALEAELDALQERREALQ-RLAEYSWDEidvASAEREIAELEAELERLDASSDDLAAL 690
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 103 QDRNIAIQSQFtrtkEELEAEKRDLIRTNERLSQELEYLTEDVKRLNEKLKE-SNTTKGELQLKLDELQASDVsvkyREK 181
Cdd:COG4913 691 EEQLEELEAEL----EELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAaEDLARLELRALLEERFAAAL----GDA 762
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 182 RLEQEKELLHSQNTWLNTELKTKTDEL-----------------LALGREKGNEILELKCNLENkkEEVSRLEEQMNGLK 244
Cdd:COG4913 763 VERELRENLEERIDALRARLNRAEEELeramrafnrewpaetadLDADLESLPEYLALLDRLEE--DGLPEYEERFKELL 840
|
250 260
....*....|....*....|...
gi 633226 245 TSNEHlqKHVEDLLTKLKEAKEQ 267
Cdd:COG4913 841 NENSI--EFVADLLSKLRRAIRE 861
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
11-154 |
3.11e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.45 E-value: 3.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 11 RTELNKLPKSVQnKLEKFLADQQSEIDGLKGRHEKFKVE---SEQQYFEIEKRLSHSQERL--VNETRECQSLRLELEKL 85
Cdd:COG1579 23 EHRLKELPAELA-ELEDELAALEARLEAAKTELEDLEKEikrLELEIEEVEARIKKYEEQLgnVRNNKEYEALQKEIESL 101
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 633226 86 NNQL----KALTEKNKELEIAQDRNIAIQSQFTRTKEELEAEKRDLIRTNERLSQELEYLTEDVKRLNEKLKE 154
Cdd:COG1579 102 KRRIsdleDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAKIPP 174
|
|
| PTZ00440 |
PTZ00440 |
reticulocyte binding protein 2-like protein; Provisional |
670-1216 |
3.57e-03 |
|
reticulocyte binding protein 2-like protein; Provisional
Pssm-ID: 240419 [Multi-domain] Cd Length: 2722 Bit Score: 42.90 E-value: 3.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 670 AALKQLQEIFENYKKE--KAENEKIQNEQLEKLQEQVTDLRSQNTKIST--QLDFASKRYEMLQDNVEgyrreitSLHER 745
Cdd:PTZ00440 833 EELKQLLQKFPTEDENlnLKELEKEFNENNQIVDNIIKDIENMNKNINIikTLNIAINRSNSNKQLVE-------HLLNN 905
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 746 NQKLTATTQKQEQIINTmtQDLRGANEKLAVAEvraeNLKKEKEML--KLSEVRLSQQRESLLAEQRGQNLLLTNLQTIQ 823
Cdd:PTZ00440 906 KIDLKNKLEQHMKIINT--DNIIQKNEKLNLLN----NLNKEKEKIekQLSDTKINNLKMQIEKTLEYYDKSKENINGND 979
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 824 GI-LERSETETK--QRLSSQIEKLEHEISHLKKKLENEVEQRHTltrnlDVQLLDTKRQLDTETNLHLNTKELLKNAQKE 900
Cdd:PTZ00440 980 GThLEKLDKEKDewEHFKSEIDKLNVNYNILNKKIDDLIKKQHD-----DIIELIDKLIKEKGKEIEEKVDQYISLLEKM 1054
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 901 IATLKQHLSNMEVQvASQSSQRTGKGQpSNKEDVDDLVSQLRQTEEQVNDLKERlktSTSNVEQYQAMVTSLEESLNKEK 980
Cdd:PTZ00440 1055 KTKLSSFHFNIDIK-KYKNPKIKEEIK-LLEEKVEALLKKIDENKNKLIEIKNK---SHEHVVNADKEKNKQTEHYNKKK 1129
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 981 QVTEEVRKNIEVRLKESAEFQTQlEKKLMEVEKEKQELqddKRRAIESMEQQLSELKKTLSSVQNEVQ---EALQRASTA 1057
Cdd:PTZ00440 1130 KSLEKIYKQMEKTLKELENMNLE-DITLNEVNEIEIEY---ERILIDHIVEQINNEAKKSKTIMEEIEsykKDIDQVKKN 1205
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1058 LSNEQQARRDCQEQAKIAVEAQNKYER--ELMLHAADVEALQAAKEQVSKMASVRQHLEETTQKA-------ESQLLECK 1128
Cdd:PTZ00440 1206 MSKERNDHLTTFEYNAYYDKATASYENieELTTEAKGLKGEANRSTNVDELKEIKLQVFSYLQQVikennkmENALHEIK 1285
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1129 ASWE-----ERERMLKdEVSKCVCRCEDLEKQNRLLHDQIEKLSDKVVASVKEGVQGPLNVSLSEEGKSQEQILEILRFI 1203
Cdd:PTZ00440 1286 NMYEflisiDSEKILK-EILNSTKKAEEFSNDAKKELEKTDNLIKQVEAKIEQAKEHKNKIYGSLEDKQIDDEIKKIEQI 1364
|
570
....*....|...
gi 633226 1204 RreKEIAETRFEV 1216
Cdd:PTZ00440 1365 K--EEISNKRKEI 1375
|
|
| PRK05431 |
PRK05431 |
seryl-tRNA synthetase; Provisional |
1402-1504 |
3.78e-03 |
|
seryl-tRNA synthetase; Provisional
Pssm-ID: 235461 [Multi-domain] Cd Length: 425 Bit Score: 42.36 E-value: 3.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1402 DLNKVRTEKETIQKDLDAK--IIDIQEKVKTITQVKKIgrryKTQYEELKAQQDKVMETSAQSSGDHQEQHVSVQEMQEL 1479
Cdd:PRK05431 3 DIKLIRENPEAVKEALAKRgfPLDVDELLELDEERREL----QTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKEL 78
|
90 100
....*....|....*....|....*
gi 633226 1480 KETLNQAETKSKSLESQVENLQKTL 1504
Cdd:PRK05431 79 KEEIKALEAELDELEAELEELLLRI 103
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1342-1652 |
3.97e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 42.65 E-value: 3.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1342 LVSQQKDPDTEEYRKLLSEKEVHTKRIQQLTEEIGRLKAEIARSNASLTNNQnliQSLKEDLNKVRTEKETIQKDLDAKI 1421
Cdd:pfam02463 163 AGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQ---LKEKLELEEEYLLYLDYLKLNEERI 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1422 IDIQEKVKTITQVKKIGRRYKTQYEELKAQQDKVMETSAQSSGDHQEQHVSVQ-EMQELKETLNQAETKSKSLESQVENL 1500
Cdd:pfam02463 240 DLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAkEEEELKSELLKLERRKVDDEEKLKES 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1501 QKTLSEKETEARNLQEQTVQLQSELSRLRQDLQDRTTQEEQLRQQITEKEEKTRKAIVAAKSKIAHLAGVKDQLTKENE- 1579
Cdd:pfam02463 320 EKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELEl 399
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 633226 1580 --ELKQRNGALDQQKDELDVRITALKSQYEGRISRLERELREHQERHLEQRDEPQEPSNKVPEQQRQITLKTTPA 1652
Cdd:pfam02463 400 ksEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLL 474
|
|
| DUF5585 |
pfam17823 |
Family of unknown function (DUF5585); This is a family of unknown function found in chordata. |
1639-1825 |
4.12e-03 |
|
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
Pssm-ID: 465521 [Multi-domain] Cd Length: 506 Bit Score: 42.25 E-value: 4.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1639 PEQQRQITLKTTPA-SGERGIASTSDPPTANikPTPVVSTPSKVTAAAmagNKSTPRASIRPMvtPATVTNPTTTPTATV 1717
Cdd:pfam17823 275 PHARRLSPAKHMPSdTMARNPAAPMGAQAQG--PIIQVSTDQPVHNTA---GEPTPSPSNTTL--EPNTPKSVASTNLAV 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1718 MPTTQVESQEAMQSEGPVEHVpvfgSTSGSVRSTSPNVQPSisqPILTVqQQTQATAFVQPTQQSHPQIEPANQelssni 1797
Cdd:pfam17823 348 VTTTKAQAKEPSASPVPVLHT----SMIPEVEATSPTTQPS---PLLPT-QGAAGPGILLAPEQVATEATAGTA------ 413
|
170 180
....*....|....*....|....*...
gi 633226 1798 vevvQSSPVERPSTSTAVFGTVSATPSS 1825
Cdd:pfam17823 414 ----SAGPTPRSSGDPKTLAMASCQLST 437
|
|
| HOOK |
pfam05622 |
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from ... |
672-1033 |
4.39e-03 |
|
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organizms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas this central coiled-coil motif mediates homodimerization and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localized to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head. This entry includes the central coiled-coiled domain and the divergent C-terminal domain.
Pssm-ID: 461694 [Multi-domain] Cd Length: 528 Bit Score: 41.98 E-value: 4.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 672 LKQLQEIFENYKKeKAENEKIQNEQLEKLQEQVTDLRSQNTkistQLDFASKRYEMLQDNVEGYRREITSLHERNQKLTA 751
Cdd:pfam05622 130 VKKLEATVETYKK-KLEDLGDLRRQVKLLEERNAEYMQRTL----QLEEELKKANALRGQLETYKRQVQELHGKLSEESK 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 752 TTQKQEQIINTMtqdlrganeklavaEVRAENLKKEKEMLKLSEVRLSQQRESLLAEQRGQNLLLTNLQTIQGILERSET 831
Cdd:pfam05622 205 KADKLEFEYKKL--------------EEKLEALQKEKERLIIERDTLRETNEELRCAQLQQAELSQADALLSPSSDPGDN 270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 832 ETKQRLSSQ----IEKLEHEISHLKKKLENEVEQRHTLTRNLDVQLLDTKRQLDTEtnlhlntkelLKNAQKEIATLKQH 907
Cdd:pfam05622 271 LAAEIMPAEirekLIRLQHENKMLRLGQEGSYRERLTELQQLLEDANRRKNELETQ----------NRLANQRILELQQQ 340
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 908 LSNMEVQVASQSSQRTGKGQPSNK-----EDVDDLVSQLRQTEEQVNDLKERLKTSTS-NVEQYQAMVT-------SLEE 974
Cdd:pfam05622 341 VEELQKALQEQGSKAEDSSLLKQKleehlEKLHEAQSELQKKKEQIEELEPKQDSNLAqKIDELQEALRkkdedmkAMEE 420
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 633226 975 SLNKEKQVTEEVRKNIEVRLKESAEFQTQ-LEKKLMEVEKEKQELQDD--KRRAIESMEQQL 1033
Cdd:pfam05622 421 RYKKYVEKAKSVIKTLDPKQNPASPPEIQaLKNQLLEKDKKIEHLERDfeKSKLQREQEEKL 482
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1435-1607 |
4.87e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.07 E-value: 4.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1435 KKIGrryKTQYEELKAQQDKVMEtSAQSSGDHQEQHVSVQEMQELKETLNQAETKSKSLESQVENLQKTLSEKEteaRNL 1514
Cdd:PRK12704 26 KKIA---EAKIKEAEEEAKRILE-EAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKE---ENL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1515 QEQtvqlQSELSRLRQDLQDRTTQEEQLRQQITEKEEKTRKAIVAAKSKIAHLAGvkdqLTKenEELKQRngALDQQKDE 1594
Cdd:PRK12704 99 DRK----LELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISG----LTA--EEAKEI--LLEKVEEE 166
|
170
....*....|...
gi 633226 1595 LDVRITALKSQYE 1607
Cdd:PRK12704 167 ARHEAAVLIKEIE 179
|
|
| PRK11637 |
PRK11637 |
AmiB activator; Provisional |
898-1108 |
5.26e-03 |
|
AmiB activator; Provisional
Pssm-ID: 236942 [Multi-domain] Cd Length: 428 Bit Score: 41.60 E-value: 5.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 898 QKEIATLKQHLSNMEVQVASQSSQRTG-KGQPSNKEDVDDLVS-QLRQTEEQVNDLKERLKTSTSNVEQYQAMVTSLEES 975
Cdd:PRK11637 46 RDQLKSIQQDIAAKEKSVRQQQQQRASlLAQLKKQEEAISQASrKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERL 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 976 LNK---------------------EKQVTE----------EVRKNIEVRLKESAEFQTQLEKKLMEVEKEKQELQDDKRR 1024
Cdd:PRK11637 126 LAAqldaafrqgehtglqlilsgeESQRGErilayfgylnQARQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQA 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1025 AIESMEQQLSELKKTLSSVQNEVQEALQRASTALSNEQQARrdcQEQAKIAVEAQNKYERElmlhAADVEALQAAKEQVS 1104
Cdd:PRK11637 206 QQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLR---DSIARAEREAKARAERE----AREAARVRDKQKQAK 278
|
....
gi 633226 1105 KMAS 1108
Cdd:PRK11637 279 RKGS 282
|
|
| DivIVA |
COG3599 |
Cell division septum initiation protein DivIVA, interacts with FtsZ and MinD [Cell cycle ... |
930-1038 |
5.37e-03 |
|
Cell division septum initiation protein DivIVA, interacts with FtsZ and MinD [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442818 [Multi-domain] Cd Length: 125 Bit Score: 39.07 E-value: 5.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 930 NKEDVDDLVSQLRQTEEQVN----DLKERLKTSTSNVEQYQAMVTSLEESLNKEKQVTEEVrknievrlKESAEfqTQLE 1005
Cdd:COG3599 21 DEDEVDEFLDEVAEDYERLIrenkELKEKLEELEEELEEYRELEETLQKTLVVAQETAEEV--------KENAE--KEAE 90
|
90 100 110
....*....|....*....|....*....|...
gi 633226 1006 KKLMEVEKEKQELQDDKRRAIESMEQQLSELKK 1038
Cdd:COG3599 91 LIIKEAELEAEKIIEEAQEKARKIVREIEELKR 123
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
415-602 |
5.62e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 5.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 415 ENKRINKYLDEIVKEVEAKAPILKRQREEYERAQKAVASLSVKLEQAMKEIQRLQEDTDKANKQSSVLERD----NRRME 490
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEiaelRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 491 IQVKDLSQQIRVLLMELEEARGNHVIRDEEVSSADISSSsevISQHLVSYRN--IEELQQQNQRLLVALRELgetreree 568
Cdd:COG4942 101 AQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQ---YLKYLAPARReqAEELRADLAELAALRAEL-------- 169
|
170 180 190
....*....|....*....|....*....|....
gi 633226 569 qETTSSKITELQLKLESALTELEQLRKSRQHQMQ 602
Cdd:COG4942 170 -EAERAELEALLAELEEERAALEALKAERQKLLA 202
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
962-1110 |
5.70e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 42.12 E-value: 5.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 962 VEQYQAMVTSLEESLNKEKQVTEEVRKNIEVRLKEsaefqtqLEKKLMEVEKEKQELQDDKrraiesmEQQLSELKKTLS 1041
Cdd:PRK00409 504 IEEAKKLIGEDKEKLNELIASLEELERELEQKAEE-------AEALLKEAEKLKEELEEKK-------EKLQEEEDKLLE 569
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 633226 1042 SVQNEVQEALQRASTALSNEQQARRDCQEQAKIAVEAQNKYERELMLHAADVEALQAAKEQVSKMASVR 1110
Cdd:PRK00409 570 EAEKEAQQAIKEAKKEADEIIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEELK 638
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
7-170 |
5.81e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.92 E-value: 5.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 7 QVLERTELNKLPKSVQNKLEKFLADQQSEIDGLKGRHEKFKVESE-----QQYFEIEKRLSHSQERLVNetrecqslrle 81
Cdd:PHA02562 242 ELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVcptctQQISEGPDRITKIKDKLKE----------- 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 82 lekLNNQLKALTEKNKELEIAQDRNIAIQSQFTRTKEELEAEKRDLIRTN----------ERLSQELEYLTEDVKRLNEK 151
Cdd:PHA02562 311 ---LQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVdkakkvkaaiEELQAEFVDNAEELAKLQDE 387
|
170
....*....|....*....
gi 633226 152 LKESNTTKGELQLKLDELQ 170
Cdd:PHA02562 388 LDKIVKTKSELVKEKYHRG 406
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
5-272 |
5.86e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 42.03 E-value: 5.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 5 LQQVLERTELNKLPKSVQNKLEKFLADQQSEIDGLKGRHEKFKVESEQQYFEIEKRlshsqerlVNETR-ECQSLRLELE 83
Cdd:pfam15921 543 LRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKE--------INDRRlELQEFKILKD 614
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 84 KLNNQLKALTEKNKELEIAQDRNIAIQSQFTRTKEELEAEKRDLIRTNERLSQELEYLTEDVKRLNE----KLKESNTTK 159
Cdd:pfam15921 615 KKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRnfrnKSEEMETTT 694
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 160 GELQLKLDELQASDVSVKYREKRLEQEKELLHSQNTWLNTELKTKTDELLALgrEKGNEILELKCNLENK-----KEEVS 234
Cdd:pfam15921 695 NKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDAL--QSKIQFLEEAMTNANKekhflKEEKN 772
|
250 260 270
....*....|....*....|....*....|....*...
gi 633226 235 RLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASME 272
Cdd:pfam15921 773 KLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANME 810
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
1371-1616 |
6.56e-03 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 41.05 E-value: 6.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1371 LTEEIGRLKAEIARSNASLTNNQNLIQSLKEDLNKVRTEKETIQKDLDAKIIDIQEKVKTITQVKKIGRRYKTQYEELKA 1450
Cdd:COG1340 6 LSSSLEELEEKIEELREEIEELKEKRDELNEELKELAEKRDELNAQVKELREEAQELREKRDELNEKVKELKEERDELNE 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1451 QQDKVMETSAQSSGDHQEQHVSVQEMQELKETLNQAE-----------------TKSKSLESQVENLQKTLsEKETEARN 1513
Cdd:COG1340 86 KLNELREELDELRKELAELNKAGGSIDKLRKEIERLEwrqqtevlspeeekelvEKIKELEKELEKAKKAL-EKNEKLKE 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1514 LQEQTVQLQSELSRLRQDLQDRTTQEEQLRQQITE---KEEKTRKAIVAAKSKIAHLAGVKDQLTKENEELKQRNGALDQ 1590
Cdd:COG1340 165 LRAELKELRKEAEEIHKKIKELAEEAQELHEEMIElykEADELRKEADELHKEIVEAQEKADELHEEIIELQKELRELRK 244
|
250 260
....*....|....*....|....*.
gi 633226 1591 QKDELDVRITALKSQYEGRISRLERE 1616
Cdd:COG1340 245 ELKKLRKKQRALKREKEKEELEEKAE 270
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
1199-1513 |
6.68e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 41.99 E-value: 6.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1199 ILRFIRREKEIAETRFEVAQVESLRYRQRVELLERELQELEDSlNAEREKVQVTAKTMAQhEELMKKTETMNVVMETNKM 1278
Cdd:COG5022 848 IQKFGRSLKAKKRFSLLKKETIYLQSAQRVELAERQLQELKID-VKSISSLKLVNLELES-EIIELKKSLSSDLIENLEF 925
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1279 LREEKERLEQDLQQMQAKVRKL----ELDIL-PLQEANAELSEKSGMLQAEKKLLEEDVKRWKARNQHLVSQQKDPdtEE 1353
Cdd:COG5022 926 KTELIARLKKLLNNIDLEEGPSieyvKLPELnKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKEL--AE 1003
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1354 YRKLLSEKEVHTKRIQQLTEEIGRLKAEIARSNASLTNNQNLiQSLKEDLNKVRTEKETIQKDLDAKIIDIQEKVKTITQ 1433
Cdd:COG5022 1004 LSKQYGALQESTKQLKELPVEVAELQSASKIISSESTELSIL-KPLQKLKGLLLLENNQLQARYKALKLRRENSLLDDKQ 1082
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1434 VKKIGRrykTQYEELKAQQDKVMETSAQSSGD------HQEQHVSVQEMQELKETLNQAETKSKSLESQVENLQKTLSEK 1507
Cdd:COG5022 1083 LYQLES---TENLLKTINVKDLEVTNRNLVKPanvlqfIVAQMIKLNLLQEISKFLSQLVNTLEPVFQKLSVLQLELDGL 1159
|
....*.
gi 633226 1508 ETEARN 1513
Cdd:COG5022 1160 FWEANL 1165
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
698-1168 |
6.69e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.95 E-value: 6.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 698 EKLQEQVTDLRSQNTKISTQLDFASKRYEMLQDNVEGYRREITSLHERNQKLTATTQKQEQIINTMTQDLRGANEKLAVA 777
Cdd:PRK02224 310 EAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEEL 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 778 EVRAENLKKEKEMLKLSEVRLSQQRESLLaeqrgqnllltnlqtiqgilersetETKQRLSSQIEKLEHEIshlkKKLEN 857
Cdd:PRK02224 390 EEEIEELRERFGDAPVDLGNAEDFLEELR-------------------------EERDELREREAELEATL----RTARE 440
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 858 EVEQRHTLtrnLDVQLLDTKRQlDTETNLHLNTkelLKNAQKEIATLKQHLSNMEVQVASqssqrtgkgqpsnKEDVDDL 937
Cdd:PRK02224 441 RVEEAEAL---LEAGKCPECGQ-PVEGSPHVET---IEEDRERVEELEAELEDLEEEVEE-------------VEERLER 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 938 VSQLRQTEEQVNDLKERLKTSTSNVEQYQAMVtsleeslnkekqvtEEVRKNIEVRLKESAEFQTQLEKKlMEVEKEKQE 1017
Cdd:PRK02224 501 AEDLVEAEDRIERLEERREDLEELIAERRETI--------------EEKRERAEELRERAAELEAEAEEK-REAAAEAEE 565
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1018 LQDDKRRAIESMEQQLSELKKTLSSVQN--EVQEALQRASTALSN-----EQQARRDCQEQAKIAVEAQNKYERELMLHA 1090
Cdd:PRK02224 566 EAEEAREEVAELNSKLAELKERIESLERirTLLAAIADAEDEIERlrekrEALAELNDERRERLAEKRERKRELEAEFDE 645
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1091 ADVEALQAAKEQVSK-MASVRQHLEETTQKAESQLLECKASWEERERM--LKDEVSKCVCRCEDLEKqnrlLHDQIEKLS 1167
Cdd:PRK02224 646 ARIEEAREDKERAEEyLEQVEEKLDELREERDDLQAEIGAVENELEELeeLRERREALENRVEALEA----LYDEAEELE 721
|
.
gi 633226 1168 D 1168
Cdd:PRK02224 722 S 722
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
852-1064 |
6.75e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.35 E-value: 6.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 852 KKKLENEVEQRHTLTRNLDVQLLDTKRQLDTETNLHLNTKELLKNAQKEIATLKQHLSNMEVQVASQ---------SSQR 922
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERreelgerarALYR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 923 TGKGQPS-----NKEDVDDLVSQ---LRQTEEQVNDLKERLKTSTSNVEQYQAMVTSLEESLNKEKQVTEEVRKNIEVRL 994
Cdd:COG3883 98 SGGSVSYldvllGSESFSDFLDRlsaLSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQ 177
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 995 KESAEFQTQLEKKLMEVEKEKQELQDDKRRAIESMEQQLSELKKTLSSVQNEVQEALQRASTALSNEQQA 1064
Cdd:COG3883 178 AEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAA 247
|
|
| WEMBL |
pfam05701 |
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required ... |
1205-1628 |
8.02e-03 |
|
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required for the chloroplast avoidance response under high intensity blue light. This avoidance response consists in the relocation of chloroplasts on the anticlinal side of exposed cells. Acts in association with PMI2 to maintain the velocity of chloroplast photo-relocation movement via the regulation of cp-actin filaments. Thus several member-sequences are described as "myosin heavy chain-like".
Pssm-ID: 461718 [Multi-domain] Cd Length: 562 Bit Score: 41.17 E-value: 8.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1205 REKEIAETRFEVAQVESLRYRQRVELLERELQELEDSLNAERekvqvtaktmAQHEELMKKteTMNVVMetnkMLREEKE 1284
Cdd:pfam05701 159 SERDIAIKRAEEAVSASKEIEKTVEELTIELIATKESLESAH----------AAHLEAEEH--RIGAAL----AREQDKL 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1285 RLEQDLQQMQAKVRKLELDILPLQEANAELSEKSGMLQ---------AEKKLLEEDVKRWKARNQHLVSQQK-DPDTEEY 1354
Cdd:pfam05701 223 NWEKELKQAEEELQRLNQQLLSAKDLKSKLETASALLLdlkaelaayMESKLKEEADGEGNEKKTSTSIQAAlASAKKEL 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1355 RKLLSEKEVHTKRIQQLTEEIGRLKAEIARSNASLTNNQNL-------IQSLKEDLNKVRTEKETIQkdldAKIIDIQEK 1427
Cdd:pfam05701 303 EEVKANIEKAKDEVNCLRVAAASLRSELEKEKAELASLRQRegmasiaVSSLEAELNRTKSEIALVQ----AKEKEAREK 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1428 VKTITQvkkigrryKTQYEELKAQQDKVMETSAQssgdhqeqhvsvQEMQELKETLNQAETKSKSLESQVENLQK-TLSE 1506
Cdd:pfam05701 379 MVELPK--------QLQQAAQEAEEAKSLAQAAR------------EELRKAKEEAEQAKAAASTVESRLEAVLKeIEAA 438
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1507 KETEARNLQEQTVQLQSELSRLRQDLQDR------TTQE-EQLRQQITEKEEKTRKAIVAAKSKIAHlagVKDQLTKENE 1579
Cdd:pfam05701 439 KASEKLALAAIKALQESESSAESTNQEDSprgvtlSLEEyYELSKRAHEAEELANKRVAEAVSQIEE---AKESELRSLE 515
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 633226 1580 ELKQRNGALDQQKDELDVRITALKSQYEGRISrLERELREHQERHlEQR 1628
Cdd:pfam05701 516 KLEEVNREMEERKEALKIALEKAEKAKEGKLA-AEQELRKWRAEH-EQR 562
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
672-1044 |
9.01e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 41.43 E-value: 9.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 672 LKQLQEIFENYKKEK-------AENEKIQNEQLEKLQEQVTDLRSQNTKISTQLDFASKRYEMLQDNVEGYRREITSLHE 744
Cdd:PRK01156 372 IESLKKKIEEYSKNIermsafiSEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNG 451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 745 RNQ----KLTATTQKQEQIINTMTQDLRGANEKLAVAEVRAENLKKEKEMLKLSEVRLSQQResllaeqrgqnllltnlq 820
Cdd:PRK01156 452 QSVcpvcGTTLGEEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLESEE------------------ 513
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 821 tiqgiLERSETETKQ--RLSSQIEKLEHEISHLKKKlENEVEQRHTLTRNLDVQLLDTKRQ-----LDTETNLHLNTKEL 893
Cdd:PRK01156 514 -----INKSINEYNKieSARADLEDIKIKINELKDK-HDKYEEIKNRYKSLKLEDLDSKRTswlnaLAVISLIDIETNRS 587
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 894 LKN-AQKEIATLKQHLSNMEVQVASQSSQrtgkgQPSNKEDVDDLVSQLRQTEEQVNDLKERLKTSTSNVEQYQAMVTSL 972
Cdd:PRK01156 588 RSNeIKKQLNDLESRLQEIEIGFPDDKSY-----IDKSIREIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEI 662
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 633226 973 EESLNKEKQVTEEVrKNIEVRLKESaefQTQLEKKLMEvEKEKQELQDDKRRAIESMEQQLSELKKTLSSVQ 1044
Cdd:PRK01156 663 DSIIPDLKEITSRI-NDIEDNLKKS---RKALDDAKAN-RARLESTIEILRTRINELSDRINDINETLESMK 729
|
|
| KpsE |
COG3524 |
Capsule polysaccharide export protein KpsE/RkpR [Cell wall/membrane/envelope biogenesis]; |
940-1073 |
9.07e-03 |
|
Capsule polysaccharide export protein KpsE/RkpR [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442746 [Multi-domain] Cd Length: 370 Bit Score: 40.99 E-value: 9.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 940 QLRQTEEQVNDLKERLKTSTSNVEQYQamvtsleeslNKEKQVTEEvrKNIEVRLKESAEFQTQLEKKLMEVEKEKQELQ 1019
Cdd:COG3524 178 AVRFAEEEVERAEERLRDAREALLAFR----------NRNGILDPE--ATAEALLQLIATLEGQLAELEAELAALRSYLS 245
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 633226 1020 DDK------RRAIESMEQQLSELKKTLSSV----------------QNEVQEALQRASTALSNEQQARRDCQEQAK 1073
Cdd:COG3524 246 PNSpqvrqlRRRIAALEKQIAAERARLTGAsggdslasllaeyerlELEREFAEKAYTSALAALEQARIEAARQQR 321
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
250-467 |
9.15e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 9.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 250 LQKHVEDLLTKLKEAKEQQASMEEKfhneLNAHIKLSNlYKSAADDSEAKSNELTRAVEELHKLLKEAGEAnKAIQDHLL 329
Cdd:COG4913 622 LEEELAEAEERLEALEAELDALQER----REALQRLAE-YSWDEIDVASAEREIAELEAELERLDASSDDL-AALEEQLE 695
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 330 EVEQSKDQMEKE---MLEKIGRLEKELENANDLLSAtkrkgailseeelaamsptaaavakivkpgmkLTELYNAYVETQ 406
Cdd:COG4913 696 ELEAELEELEEEldeLKGEIGRLEKELEQAEEELDE--------------------------------LQDRLEAAEDLA 743
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 633226 407 DQLLLEKLENKRINKYLDEIVKEVEakapilKRQREEYERAQKAVASLSVKLEQAMKEIQR 467
Cdd:COG4913 744 RLELRALLEERFAAALGDAVERELR------ENLEERIDALRARLNRAEEELERAMRAFNR 798
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
1367-1652 |
9.48e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 40.66 E-value: 9.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1367 RIQQLTEEIGRLKAEIARSNASLTNNQNLIQSLKEDLNKVRTEKETIQKDLDAKIIDIQEKVKTITQVKKIGRRYKTQYE 1446
Cdd:COG4372 39 ELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELE 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1447 ELKAQQDKVMETSAQSSgdhqeqhvsvQEMQELKETLNQAETKSKSLESQVENLQKTLSEKETEARNLQEQtvQLQSELS 1526
Cdd:COG4372 119 ELQKERQDLEQQRKQLE----------AQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEA--EAEQALD 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1527 RLRQDLQDRTTQEEQLRQQITEKEEKTRKAIVAAKSKIAHLAGVKDQLTKENEELKQRNGALDQQKDELDVRITALKSQY 1606
Cdd:COG4372 187 ELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELA 266
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 633226 1607 EGRISRLERELREHQERHLEQRDEPQEPSNKVPEQQRQITLKTTPA 1652
Cdd:COG4372 267 ILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGA 312
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1491-1623 |
9.88e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.00 E-value: 9.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1491 KSLESQVENLQKTLSEK----ETEARNLQEQTVQlqSELSRLRQDLQDRTTQEEQLRQQITEKEEKTRKAivaaksKIAH 1566
Cdd:COG2433 346 DAYKNKFERVEKKVPPDvdrdEVKARVIRGLSIE--EALEELIEKELPEEEPEAEREKEHEERELTEEEE------EIRR 417
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633226 1567 LAGVKDQLTKENEELKQRNGALDQQKDELDVRITALKSQY-------------EGRISRLERELREHQER 1623
Cdd:COG2433 418 LEEQVERLEAEVEELEAELEEKDERIERLERELSEARSEErreirkdreisrlDREIERLERELEEERER 487
|
|
| |
