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Conserved domains on  [gi|1834493243|emb|CAB3264061|]
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NADH dehydrogenase subunit 3 [Phallusia mammillata]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009625)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 1-124 2.20e-26

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 94.58  E-value: 2.20e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834493243   1 MLFTLYFFSVCLIVGALGYLGssstkglyGHYKRLVTSGGDKGSSYECGFVDMNESINTYTMQFYIIGLSFILFDLEILI 80
Cdd:MTH00203    1 MNLIMLFFLIALLLSLILLFI--------AFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIAL 72

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1834493243  81 IIPMVVTGAEGYEALsawgLGKSFFLVVVSMAAYYEVMGGVVSF 124
Cdd:MTH00203   73 LLPLPWSNQLSSLSL----LLAFLFLILLTLGLIYEWLQGGLEW 112
 
Name Accession Description Interval E-value
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 1-124 2.20e-26

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 94.58  E-value: 2.20e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834493243   1 MLFTLYFFSVCLIVGALGYLGssstkglyGHYKRLVTSGGDKGSSYECGFVDMNESINTYTMQFYIIGLSFILFDLEILI 80
Cdd:MTH00203    1 MNLIMLFFLIALLLSLILLFI--------AFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIAL 72

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1834493243  81 IIPMVVTGAEGYEALsawgLGKSFFLVVVSMAAYYEVMGGVVSF 124
Cdd:MTH00203   73 LLPLPWSNQLSSLSL----LLAFLFLILLTLGLIYEWLQGGLEW 112
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
42-116 2.27e-08

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 47.80  E-value: 2.27e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1834493243  42 KGSSYECGFVDMNESINTYTMQFYIIGLSFILFDLEILIIIPMVVTgaegYEALSAWGLGKSF-FLVVVSMAAYYE 116
Cdd:pfam00507  16 KLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVS----FRELGWFGFVEMLiFIAILLVGLVYA 87
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 42-115 2.86e-05

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 40.49  E-value: 2.86e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1834493243  42 KGSSYECGFVDMNESINTYTMQFYIIGLSFILFDLEILIIIPMVVTgaegYEALSAWGLGKSFFLVVVSMAAYY 115
Cdd:COG0838    38 KLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVV----FRELGWFGLIEMLVFIAILLVGLI 107
 
Name Accession Description Interval E-value
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 1-124 2.20e-26

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 94.58  E-value: 2.20e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834493243   1 MLFTLYFFSVCLIVGALGYLGssstkglyGHYKRLVTSGGDKGSSYECGFVDMNESINTYTMQFYIIGLSFILFDLEILI 80
Cdd:MTH00203    1 MNLIMLFFLIALLLSLILLFI--------AFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIAL 72

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1834493243  81 IIPMVVTGAEGYEALsawgLGKSFFLVVVSMAAYYEVMGGVVSF 124
Cdd:MTH00203   73 LLPLPWSNQLSSLSL----LLAFLFLILLTLGLIYEWLQGGLEW 112
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
42-116 2.27e-08

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 47.80  E-value: 2.27e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1834493243  42 KGSSYECGFVDMNESINTYTMQFYIIGLSFILFDLEILIIIPMVVTgaegYEALSAWGLGKSF-FLVVVSMAAYYE 116
Cdd:pfam00507  16 KLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVS----FRELGWFGFVEMLiFIAILLVGLVYA 87
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 42-116 5.53e-08

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 47.46  E-value: 5.53e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1834493243  42 KGSSYECGFVDMNESINTYTMQFYIIGLSFILFDLEILIIIPMVVTgaEGYEALSAWGLGKSFFLVVVSMAAYYE 116
Cdd:MTH00161   33 KSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFI--FKTSNMMSWLITSSFFILILLLGLYYE 105
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 41-84 2.20e-07

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 46.09  E-value: 2.20e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1834493243  41 DKGSSYECGFVDMNESINTYTMQFYIIGLSFILFDLEILIIIPM 84
Cdd:MTH00106   32 EKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPL 75
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-120 2.98e-07

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 45.62  E-value: 2.98e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834493243   1 MLFTLYFFSVCLIVG-ALGYLGSSSTKGLYghykrlvtSGGDKGSSYECGFVDMNESINTYTMQFYIIGLSFILFDLEIL 79
Cdd:MTH00148    1 MLSILLSLLFALILSpVLLLLGLVLSKRSY--------SDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIV 72

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1834493243  80 IIIPMVVTGAEGYealSAWGLGKSF-FLVVVSMAAYYEVMGG 120
Cdd:MTH00148   73 LLFPVLQSLGSSF---SVWSLTSLFiFLLILILGLFHEWNEG 111
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-84 3.73e-07

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 45.36  E-value: 3.73e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834493243   1 MLFTLYFFSVCLIVgalgylgsSSTKGLYGHYKRLVTSGGDKGSSYECGFVDMNESINTYTMQFYIIGLSFILFDLEILI 80
Cdd:MTH00042    1 MTNLIFFLLIILIL--------TSLLLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIAL 72


                  ....
gi 1834493243  81 IIPM 84
Cdd:MTH00042   73 LFPL 76
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 41-83 1.23e-05

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 41.13  E-value: 1.23e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1834493243  41 DKGSSYECGFVDMNESINTYTMQFYIIGLSFILFDLEILIIIP 83
Cdd:MTH00069   31 EKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLP 73
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 42-115 2.86e-05

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 40.49  E-value: 2.86e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1834493243  42 KGSSYECGFVDMNESINTYTMQFYIIGLSFILFDLEILIIIPMVVTgaegYEALSAWGLGKSFFLVVVSMAAYY 115
Cdd:COG0838    38 KLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVV----FRELGWFGLIEMLVFIAILLVGLI 107
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 41-84 5.83e-05

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 39.48  E-value: 5.83e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1834493243  41 DKGSSYECGFVDMNESINTYTMQFYIIGLSFILFDLEILIIIPM 84
Cdd:MTH00113   32 EKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPL 75
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 37-116 1.18e-04

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 38.69  E-value: 1.18e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834493243  37 TSGGDKGSSYECGFVDMNESINTYTMQFYIIGLSFILFDLEILIIIPMVVTGAEGYEALSAwgLGKSFFLVVVSMAAYYE 116
Cdd:MTH00012   30 TADREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTILMTSTSKTVV--YTSILFLLILVIGLIHE 107
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 42-84 1.49e-04

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 38.36  E-value: 1.49e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1834493243  42 KGSSYECGFVDMNESINTYTMQFYIIGLSFILFDLEILIIIPM 84
Cdd:MTH00136   34 KLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPL 76
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 41-121 1.69e-04

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 38.12  E-value: 1.69e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834493243  41 DKGSSYECGFVDMNESINTYTMQFYIIGLSFILFDLEILIIIPMVVTgaegYEALSAWGLGKSF-FLVVVSMAAYYE-VM 118
Cdd:MTH00018   32 EKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVL----YNQIAPFGFWTMVgFLFILTLGLIYEwIK 107


                  ...
gi 1834493243 119 GGV 121
Cdd:MTH00018  108 GGL 110
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
42-109 1.03e-03

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 36.57  E-value: 1.03e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1834493243  42 KGSSYECGFVDMNESiNTYTMQFYIIGLSFILFDLEILIIIPMVVtgaeGYEALSAWGLGKSFFLVVV 109
Cdd:PRK08489   47 KLAIYECGPEPVKQP-NRISSHFYIMALLFILFDVEIVFMFPWAV----DFKLLGLFGLIEMLLFIVL 109
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 39-87 1.18e-03

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 36.00  E-value: 1.18e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1834493243  39 GGDKGSSYECGFvdmnESINTYTMQF----YIIGLSFILFDLEILIIIPMVVT 87
Cdd:PRK06602   38 DREKNSPYESGF----EAFGDARMKFdvrfYLVAILFVIFDLEAAFLFPWAVS 86
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 42-86 1.69e-03

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 35.64  E-value: 1.69e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1834493243  42 KGSSYECGFVDMNESINTYTMQFYIIGLSFILFDLEILIIIPMVV 86
Cdd:MTH00092   34 KVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFLGLLV 78
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 3-120 1.98e-03

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 35.68  E-value: 1.98e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834493243   3 FTLYFFSVCLIVGALGYLGSSSTkGLYGHYKRLVTSGGDKGSSYECGFVDMNESINTYTMQFYIIGLSFILFDLEILIII 82
Cdd:MTH00030    5 FKTIFFSTLLGVGIILLLVSISF-TLGNSRIGLTKPDSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLF 83

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1834493243  83 PMVVTGAEgYEALSAWGLGKsfFLVVVSMAAYYEVMGG 120
Cdd:MTH00030   84 PWSIVFNQ-LNLFSFWIVYT--FLIVLAIGLAYEWIKG 118
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 41-87 2.92e-03

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 35.07  E-value: 2.92e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1834493243  41 DKGSSYECGFVDMNESINTYTMQFYIIGLSFILFDLEILIIIPMVVT 87
Cdd:MTH00055   37 EKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVV 83
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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