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Conserved domains on  [gi|18447868|emb|CAD22044|]
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cytochrome b, partial (mitochondrion) [Hapalemur griseus occidentalis]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-119 1.26e-89

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 264.19  E-value: 1.26e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18447868    1 PSNMSAWWNFGSLLGACLALQIITGLFLAMHYTADTMTAFSSVTHICRDVNHGWIIRYLHANGASMFFLCLFIHIGRGLY 80
Cdd:MTH00100  24 PSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLY 103

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 18447868   81 YGSFTLSETWNIGIILLFTVMATAFMGYVLPWGQMSFWG 119
Cdd:MTH00100 104 YGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWG 142
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-119 1.26e-89

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 264.19  E-value: 1.26e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18447868    1 PSNMSAWWNFGSLLGACLALQIITGLFLAMHYTADTMTAFSSVTHICRDVNHGWIIRYLHANGASMFFLCLFIHIGRGLY 80
Cdd:MTH00100  24 PSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLY 103

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 18447868   81 YGSFTLSETWNIGIILLFTVMATAFMGYVLPWGQMSFWG 119
Cdd:MTH00100 104 YGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWG 142
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-119 2.62e-53

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 165.62  E-value: 2.62e-53
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18447868   1 PSNMSAWWNFGSLLGACLALQIITGLFLAMHYTADTMTAFSSVTHICRDVNHGWIIRYLHANGASMFFLCLFIHIGRGLY 80
Cdd:cd00284  16 PSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLY 95

                        90       100       110       120
                ....*....|....*....|....*....|....*....|.
gi 18447868  81 YGSF--TLSETWNIGIILLFTVMATAFMGYVLPWGQMSFWG 119
Cdd:cd00284  96 YGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWG 136
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-119 4.42e-49

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 154.46  E-value: 4.42e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18447868     1 PSNMSAWWNFGSLLGACLALQIITGLFLAMHYTADTMTAFSSVTHICRDVNHGWIIRYLHANGASMFFLCLFIHIGRGLY 80
Cdd:pfam00033   7 PSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLY 86

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 18447868    81 YGSF--TLSETWNIGIILLFTVMATAFMGYVLPWGQMSFWG 119
Cdd:pfam00033  87 YGGFsyPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWG 127
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-119 1.30e-47

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 156.49  E-value: 1.30e-47
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18447868   1 PSNMSAWWNFGSLLGACLALQIITGLFLAMHYTADTMTAFSSVTHICRDVNHGWIIRYLHANGASMFFLCLFIHIGRGLY 80
Cdd:COG1290  33 PKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFF 112

                        90       100       110       120
                ....*....|....*....|....*....|....*....|...
gi 18447868  81 YGSFT----LseTWNIGIILLFTVMATAFMGYVLPWGQMSFWG 119
Cdd:COG1290 113 YGAYKkpreL--NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWG 153
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-119 1.26e-89

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 264.19  E-value: 1.26e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18447868    1 PSNMSAWWNFGSLLGACLALQIITGLFLAMHYTADTMTAFSSVTHICRDVNHGWIIRYLHANGASMFFLCLFIHIGRGLY 80
Cdd:MTH00100  24 PSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLY 103

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 18447868   81 YGSFTLSETWNIGIILLFTVMATAFMGYVLPWGQMSFWG 119
Cdd:MTH00100 104 YGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWG 142
CYTB MTH00119
cytochrome b; Provisional
 1-119 1.98e-80

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 240.57  E-value: 1.98e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18447868    1 PSNMSAWWNFGSLLGACLALQIITGLFLAMHYTADTMTAFSSVTHICRDVNHGWIIRYLHANGASMFFLCLFIHIGRGLY 80
Cdd:MTH00119  25 PSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLY 104

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 18447868   81 YGSFTLSETWNIGIILLFTVMATAFMGYVLPWGQMSFWG 119
Cdd:MTH00119 105 YGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWG 143
CYTB MTH00156
cytochrome b; Provisional
 1-119 1.60e-77

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 232.37  E-value: 1.60e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18447868    1 PSNMSAWWNFGSLLGACLALQIITGLFLAMHYTADTMTAFSSVTHICRDVNHGWIIRYLHANGASMFFLCLFIHIGRGLY 80
Cdd:MTH00156  14 PSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIY 93

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 18447868   81 YGSFTLSETWNIGIILLFTVMATAFMGYVLPWGQMSFWG 119
Cdd:MTH00156  94 YGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWG 132
CYTB MTH00074
cytochrome b; Provisional
 1-119 2.27e-76

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 230.34  E-value: 2.27e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18447868    1 PSNMSAWWNFGSLLGACLALQIITGLFLAMHYTADTMTAFSSVTHICRDVNHGWIIRYLHANGASMFFLCLFIHIGRGLY 80
Cdd:MTH00074  25 PSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLY 104

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 18447868   81 YGSFTLSETWNIGIILLFTVMATAFMGYVLPWGQMSFWG 119
Cdd:MTH00074 105 YGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWG 143
CYTB MTH00131
cytochrome b; Provisional
 1-119 3.14e-76

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 229.92  E-value: 3.14e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18447868    1 PSNMSAWWNFGSLLGACLALQIITGLFLAMHYTADTMTAFSSVTHICRDVNHGWIIRYLHANGASMFFLCLFIHIGRGLY 80
Cdd:MTH00131  24 PSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLY 103

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 18447868   81 YGSFTLSETWNIGIILLFTVMATAFMGYVLPWGQMSFWG 119
Cdd:MTH00131 104 YGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWG 142
CYTB MTH00191
cytochrome b; Provisional
 1-119 1.34e-73

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 222.87  E-value: 1.34e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18447868    1 PSNMSAWWNFGSLLGACLALQIITGLFLAMHYTADTMTAFSSVTHICRDVNHGWIIRYLHANGASMFFLCLFIHIGRGLY 80
Cdd:MTH00191  21 PSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLY 100

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 18447868   81 YGSFTLSETWNIGIILLFTVMATAFMGYVLPWGQMSFWG 119
Cdd:MTH00191 101 YGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWG 139
CYTB MTH00145
cytochrome b; Provisional
 1-119 1.17e-70

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 215.54  E-value: 1.17e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18447868    1 PSNMSAWWNFGSLLGACLALQIITGLFLAMHYTADTMTAFSSVTHICRDVNHGWIIRYLHANGASMFFLCLFIHIGRGLY 80
Cdd:MTH00145  25 PVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLY 104

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 18447868   81 YGSFTLSETWNIGIILLFTVMATAFMGYVLPWGQMSFWG 119
Cdd:MTH00145 105 YGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWG 143
CYTB MTH00034
cytochrome b; Validated
 1-119 1.30e-69

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 213.03  E-value: 1.30e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18447868    1 PSNMSAWWNFGSLLGACLALQIITGLFLAMHYTADTMTAFSSVTHICRDVNHGWIIRYLHANGASMFFLCLFIHIGRGLY 80
Cdd:MTH00034  24 PSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLY 103

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 18447868   81 YGSFTLSETWNIGIILLFTVMATAFMGYVLPWGQMSFWG 119
Cdd:MTH00034 104 YGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWA 142
CYTB MTH00016
cytochrome b; Validated
 1-119 3.10e-67

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 206.84  E-value: 3.10e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18447868    1 PSNMSAWWNFGSLLGACLALQIITGLFLAMHYTADTMTAFSSVTHICRDVNHGWIIRYLHANGASMFFLCLFIHIGRGLY 80
Cdd:MTH00016  25 PSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIY 104

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 18447868   81 YGSFTLSETWNIGIILLFTVMATAFMGYVLPWGQMSFWG 119
Cdd:MTH00016 105 YGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWG 143
CYTB MTH00022
cytochrome b; Validated
 1-119 3.07e-61

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 191.45  E-value: 3.07e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18447868    1 PSNMSAWWNFGSLLGACLALQIITGLFLAMHYTADTMTAFSSVTHICRDVNHGWIIRYLHANGASMFFLCLFIHIGRGLY 80
Cdd:MTH00022  23 PSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLY 102

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 18447868   81 YGSFTLSETWNIGIILLFTVMATAFMGYVLPWGQMSFWG 119
Cdd:MTH00022 103 YGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWG 141
CYTB MTH00224
cytochrome b; Provisional
 1-119 1.40e-59

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 187.44  E-value: 1.40e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18447868    1 PSNMSAWWNFGSLLGACLALQIITGLFLAMHYTADTMTAFSSVTHICRDVNHGWIIRYLHANGASMFFLCLFIHIGRGLY 80
Cdd:MTH00224  25 PNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLY 104

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 18447868   81 YGSFTLSETWNIGIILLFTVMATAFMGYVLPWGQMSFWG 119
Cdd:MTH00224 105 YGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWG 143
CYTB MTH00053
cytochrome b; Provisional
 1-118 6.12e-58

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 182.98  E-value: 6.12e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18447868    1 PSNMSAWWNFGSLLGACLALQIITGLFLAMHYTADTMTAFSSVTHICRDVNHGWIIRYLHANGASMFFLCLFIHIGRGLY 80
Cdd:MTH00053  25 PSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIY 104

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 18447868   81 YGSFTLSETWNIGIILLFTVMATAFMGYVLPWGQMSFW 118
Cdd:MTH00053 105 YGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFW 142
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-119 2.62e-53

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 165.62  E-value: 2.62e-53
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18447868   1 PSNMSAWWNFGSLLGACLALQIITGLFLAMHYTADTMTAFSSVTHICRDVNHGWIIRYLHANGASMFFLCLFIHIGRGLY 80
Cdd:cd00284  16 PSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLY 95

                        90       100       110       120
                ....*....|....*....|....*....|....*....|.
gi 18447868  81 YGSF--TLSETWNIGIILLFTVMATAFMGYVLPWGQMSFWG 119
Cdd:cd00284  96 YGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWG 136
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-119 4.42e-49

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 154.46  E-value: 4.42e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18447868     1 PSNMSAWWNFGSLLGACLALQIITGLFLAMHYTADTMTAFSSVTHICRDVNHGWIIRYLHANGASMFFLCLFIHIGRGLY 80
Cdd:pfam00033   7 PSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLY 86

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 18447868    81 YGSF--TLSETWNIGIILLFTVMATAFMGYVLPWGQMSFWG 119
Cdd:pfam00033  87 YGGFsyPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWG 127
CYTB MTH00033
cytochrome b; Provisional
 1-119 6.20e-49

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 160.10  E-value: 6.20e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18447868    1 PSNMSAWWNFGSLLGACLALQIITGLFLAMHYTADTMTAFSSVTHICRDVNHGWIIRYLHANGASMFFLCLFIHIGRGLY 80
Cdd:MTH00033  21 PSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLY 100

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 18447868   81 YGSFTLSETWNIGIILLFTVMATAFMGYVLPWGQMSFWG 119
Cdd:MTH00033 101 YGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWA 139
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-119 1.30e-47

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 156.49  E-value: 1.30e-47
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18447868   1 PSNMSAWWNFGSLLGACLALQIITGLFLAMHYTADTMTAFSSVTHICRDVNHGWIIRYLHANGASMFFLCLFIHIGRGLY 80
Cdd:COG1290  33 PKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFF 112

                        90       100       110       120
                ....*....|....*....|....*....|....*....|...
gi 18447868  81 YGSFT----LseTWNIGIILLFTVMATAFMGYVLPWGQMSFWG 119
Cdd:COG1290 113 YGAYKkpreL--NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWG 153
CYTB MTH00086
cytochrome b; Provisional
 1-119 5.13e-42

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 141.23  E-value: 5.13e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18447868    1 PSNMSAWWNFGSLLGACLALQIITGLFLAMHYTADTMTAFSSVTHICRDVNHGWIIRYLHANGASMFFLCLFIHIGRGLY 80
Cdd:MTH00086  13 SKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLF 92

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 18447868   81 YGSFTLSETWNIGIILLFTVMATAFMGYVLPWGQMSFWG 119
Cdd:MTH00086  93 MMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWA 131
CYTB MTH00046
cytochrome b; Validated
 4-118 3.33e-29

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 107.76  E-value: 3.33e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18447868    4 MSAWWNFGSLLGACLALQIITGLFLAMHYTADTMTAFSSVTHICRDVNHGWIIRYLHANGASMFFLCLFIHIGRGLYYGS 83
Cdd:MTH00046  18 LNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSS 97

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 18447868   84 FTLSETWNIGIILLFTVMATAFMGYVLPWGQMSFW 118
Cdd:MTH00046  98 YSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYW 132
PRK03735 PRK03735
cytochrome b6; Provisional
 10-118 9.96e-23

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 88.23  E-value: 9.96e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18447868   10 FGSLLGACLALQIITGLFLAMHYTADTMTAFSSVTHICRDVNHGWIIRYLHANGASMFFLCLFIHIGRGLYYGSFTLSE- 88
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90       100       110
                 ....*....|....*....|....*....|.
gi 18447868   89 -TWNIGIILLFTVMATAFMGYVLPWGQMSFW 118
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYF 154
petB CHL00070
cytochrome b6
 1-118 8.40e-17

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 72.45  E-value: 8.40e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18447868    1 PSNMSAWWNFGSLLGACLALQIITGLFLAMHYTADTMTAFSSVTHICRDVNHGWIIRYLHANGASMFFLCLFIHIGRGLY 80
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 18447868   81 YGSFTLSE--TWNIGIILLFTVMATAFMGYVLPWGQMSFW 118
Cdd:CHL00070 107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYW 146
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
65-119 1.41e-10

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 55.33  E-value: 1.41e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 18447868    65 SMFFLCLFIHIGRGLYYGSFTLSE--TWNIGIILLFTVMATAFMGYVLPWGQMSFWG 119
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTG 57
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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