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Conserved domains on  [gi|23893615|emb|CAD53419|]
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EBNA3A nuclear protein [Human herpesvirus 4]

Protein Classification

PHA03379 family protein( domain architecture ID 11476234)

PHA03379 family protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PHA03379 PHA03379
EBNA-3A; Provisional
1-944 0e+00

EBNA-3A; Provisional


:

Pssm-ID: 223066 [Multi-domain]  Cd Length: 935  Bit Score: 1570.82  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615    1 MDKDRPGPPAlDDNMEEEVPSTSVVQEQVSAGDWENVLIELSDSSSEKEAEDAHLEPAQKGTKRKRVDHDAGGSAPARPM 80
Cdd:PHA03379   1 MDKDRPGLPA-PDDNIEEVPSTSGVQEQASGGDWENVLIEDSDSSSEEEAEDAHLEPPQKGKKRKRVDDDAGGSAPAQPP 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615   81 LPPQPDLPGREAILRRFPLDLRTLLQAIGAAATRIDTRAIDQFFGSQISNTEMYIMYAMAIRQAIRDRRRNPASRRDQAK 160
Cdd:PHA03379  80 CPPQLDLPGREAILGRFPLDLRKLLQAIGAAATHPDTRAIDQFFGSQISNTQRYLMYAMAIRQAIRDRRRNPASRRCQNK 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615  161 WRLQTLAAGWPMGYQAYSSWMYSYTDHQTTPTFVHLQATLGCTGGRRCHVTFSAGTFKLPRCTPGDRQWLYVQSSVGNIV 240
Cdd:PHA03379 160 WRLTTLAAGWPMGYQAYSSWMYSYTDDQRTPTRIHLQATLGCEEGRRCHVTFSAGTFKPPRCSPGDRQWLYVQSCVGELV 239
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615  241 QSCNPRYSIFFDYMAIHRSLTKIWEEVLTPDQRVSFMEFLGFLQRTDLSYIKSFVSDALGTTSIQTPWIDDNPSTETAQA 320
Cdd:PHA03379 240 QSCNPIYSIFFDYMAIHRSLTKIWEEVLTPDQRVPFMEFLGFLQRTDLIYIKSFVSEALGTTSIQTPWLDENPSTETAQA 319
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615  321 WNAGFLRGRAYGIDLLRTEGEHVEGATGETREESEDTESDGDDEDLPCIVSRGGPKVKRPPIFIRRLHRLLLMRAGKRTE 400
Cdd:PHA03379 320 WNAGLLRGRAYGLDLLRTEGEHDEGATGETREESEDTESDGDDEELPRIVSREGTKRKRPPIFLRRLHRLLLMRAGKLTE 399
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615  401 QGKEVLEKARGSTYGTPRPPVPKPRPEVPQSDETATSHGSAQVPEPPTIHLAAQGmayPLHEQHGMAPCPVAQAPPTPLP 480
Cdd:PHA03379 400 RAREALEKASEPTYGTPRPPVEKPRPEVPQSLETATSHGSAQVPEPPPVHDLEPG---PLHDQHSMAPCPVAQLPPGPLQ 476
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615  481 PVSPGDQLPGVFSDGRVACAPVPAPAGPIVRPWEPSLTQAAGQAFAPVRPQHMPVEPVPVPTVALERpvypkPVRPAPPK 560
Cdd:PHA03379 477 DLEPGDQLPGVVQDGRPACAPVPAPAGPIVRPWEASLSQVPGVAFAPVMPQPMPVEPVPVPTVALER-----PVCPAPPL 551
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615  561 IAMQGPGETSGIRRARERWRPAPWTPNPPRSPSQMSVRDRLARLRAEAQVKQASVEVQPPQLTQVSPQQPMEGPLVPEQQ 640
Cdd:PHA03379 552 IAMQGPGETSGIVRVRERWRPAPWTPNPPRSPSQMSVRDRLARLRAEAQPYQASVEVQPPQLTQVSPQQPMEYPLEPEQQ 631
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615  641 MFPGAPFSQVADVVRAPGVPAMQPQYFDLPLIQPISQGAPVAPLRASMGPVPPVPATQPQYFDIPLTEPINQGASAAHFL 720
Cdd:PHA03379 632 MFPGSPFSQVADVMRAGGVPAMQPQYFDLPLQQPISQGAPLAPLRASMGPVPPVPATQPQYFDIPLTEPINQGASAAHFL 711
                        730       740       750       760       770       780       790       800
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615  721 PQQPMEGPLVPEQWMFPGAALSQSVRPGVAQSQYFDLPLTQPINHGAPAAHFLHQPPMEGPWVPEQWMFQGAPPSQGTDV 800
Cdd:PHA03379 712 PQQPMEGPLVPERWMFQGATLSQSVRPGVAQSQYFDLPLTQPINHGAPAAHFLHQPPMEGPWVPEQWMFQGAPPSQGTDV 791
                        810       820       830       840       850       860       870       880
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615  801 VQHQLDALGYTLHGLNHPGVPVSPAVNQYHLSQAAFGLPIDEDESGEGSDTSEPCEALDLSIHGRPCPQAPEWPVQEEGG 880
Cdd:PHA03379 792 VQHQLDALGYVLHVLNHPGVPVSPAVNQYHVSQAAFGLPIDEDESGEGSDTSEPCEALDLSIHGRPCPQAPEWPVQGEGG 871
                        890       900       910       920       930       940
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 23893615  881 QDATEVLDLSIHGRPRPRTPEWPVQGEGGQNVTGPETRRVVVSAVVHMCQDDEFPDLQDPPDEA 944
Cdd:PHA03379 872 QDATEVLDLSIHGRPRPRTPEWPVQGEDGQNVTGAESRRVVVSALVHMCQDDEFPDLQDPPDEA 935
 
Name Accession Description Interval E-value
PHA03379 PHA03379
EBNA-3A; Provisional
1-944 0e+00

EBNA-3A; Provisional


Pssm-ID: 223066 [Multi-domain]  Cd Length: 935  Bit Score: 1570.82  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615    1 MDKDRPGPPAlDDNMEEEVPSTSVVQEQVSAGDWENVLIELSDSSSEKEAEDAHLEPAQKGTKRKRVDHDAGGSAPARPM 80
Cdd:PHA03379   1 MDKDRPGLPA-PDDNIEEVPSTSGVQEQASGGDWENVLIEDSDSSSEEEAEDAHLEPPQKGKKRKRVDDDAGGSAPAQPP 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615   81 LPPQPDLPGREAILRRFPLDLRTLLQAIGAAATRIDTRAIDQFFGSQISNTEMYIMYAMAIRQAIRDRRRNPASRRDQAK 160
Cdd:PHA03379  80 CPPQLDLPGREAILGRFPLDLRKLLQAIGAAATHPDTRAIDQFFGSQISNTQRYLMYAMAIRQAIRDRRRNPASRRCQNK 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615  161 WRLQTLAAGWPMGYQAYSSWMYSYTDHQTTPTFVHLQATLGCTGGRRCHVTFSAGTFKLPRCTPGDRQWLYVQSSVGNIV 240
Cdd:PHA03379 160 WRLTTLAAGWPMGYQAYSSWMYSYTDDQRTPTRIHLQATLGCEEGRRCHVTFSAGTFKPPRCSPGDRQWLYVQSCVGELV 239
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615  241 QSCNPRYSIFFDYMAIHRSLTKIWEEVLTPDQRVSFMEFLGFLQRTDLSYIKSFVSDALGTTSIQTPWIDDNPSTETAQA 320
Cdd:PHA03379 240 QSCNPIYSIFFDYMAIHRSLTKIWEEVLTPDQRVPFMEFLGFLQRTDLIYIKSFVSEALGTTSIQTPWLDENPSTETAQA 319
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615  321 WNAGFLRGRAYGIDLLRTEGEHVEGATGETREESEDTESDGDDEDLPCIVSRGGPKVKRPPIFIRRLHRLLLMRAGKRTE 400
Cdd:PHA03379 320 WNAGLLRGRAYGLDLLRTEGEHDEGATGETREESEDTESDGDDEELPRIVSREGTKRKRPPIFLRRLHRLLLMRAGKLTE 399
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615  401 QGKEVLEKARGSTYGTPRPPVPKPRPEVPQSDETATSHGSAQVPEPPTIHLAAQGmayPLHEQHGMAPCPVAQAPPTPLP 480
Cdd:PHA03379 400 RAREALEKASEPTYGTPRPPVEKPRPEVPQSLETATSHGSAQVPEPPPVHDLEPG---PLHDQHSMAPCPVAQLPPGPLQ 476
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615  481 PVSPGDQLPGVFSDGRVACAPVPAPAGPIVRPWEPSLTQAAGQAFAPVRPQHMPVEPVPVPTVALERpvypkPVRPAPPK 560
Cdd:PHA03379 477 DLEPGDQLPGVVQDGRPACAPVPAPAGPIVRPWEASLSQVPGVAFAPVMPQPMPVEPVPVPTVALER-----PVCPAPPL 551
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615  561 IAMQGPGETSGIRRARERWRPAPWTPNPPRSPSQMSVRDRLARLRAEAQVKQASVEVQPPQLTQVSPQQPMEGPLVPEQQ 640
Cdd:PHA03379 552 IAMQGPGETSGIVRVRERWRPAPWTPNPPRSPSQMSVRDRLARLRAEAQPYQASVEVQPPQLTQVSPQQPMEYPLEPEQQ 631
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615  641 MFPGAPFSQVADVVRAPGVPAMQPQYFDLPLIQPISQGAPVAPLRASMGPVPPVPATQPQYFDIPLTEPINQGASAAHFL 720
Cdd:PHA03379 632 MFPGSPFSQVADVMRAGGVPAMQPQYFDLPLQQPISQGAPLAPLRASMGPVPPVPATQPQYFDIPLTEPINQGASAAHFL 711
                        730       740       750       760       770       780       790       800
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615  721 PQQPMEGPLVPEQWMFPGAALSQSVRPGVAQSQYFDLPLTQPINHGAPAAHFLHQPPMEGPWVPEQWMFQGAPPSQGTDV 800
Cdd:PHA03379 712 PQQPMEGPLVPERWMFQGATLSQSVRPGVAQSQYFDLPLTQPINHGAPAAHFLHQPPMEGPWVPEQWMFQGAPPSQGTDV 791
                        810       820       830       840       850       860       870       880
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615  801 VQHQLDALGYTLHGLNHPGVPVSPAVNQYHLSQAAFGLPIDEDESGEGSDTSEPCEALDLSIHGRPCPQAPEWPVQEEGG 880
Cdd:PHA03379 792 VQHQLDALGYVLHVLNHPGVPVSPAVNQYHVSQAAFGLPIDEDESGEGSDTSEPCEALDLSIHGRPCPQAPEWPVQGEGG 871
                        890       900       910       920       930       940
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 23893615  881 QDATEVLDLSIHGRPRPRTPEWPVQGEGGQNVTGPETRRVVVSAVVHMCQDDEFPDLQDPPDEA 944
Cdd:PHA03379 872 QDATEVLDLSIHGRPRPRTPEWPVQGEDGQNVTGAESRRVVVSALVHMCQDDEFPDLQDPPDEA 935
EBV-NA3 pfam05009
Epstein-Barr virus nuclear antigen 3 (EBNA-3); This family contains EBNA-3A, -3B, and -3C ...
139-384 8.64e-143

Epstein-Barr virus nuclear antigen 3 (EBNA-3); This family contains EBNA-3A, -3B, and -3C which are latent infection nuclear proteins important for Epstein-Barr virus (EBV)-induced B-cell immortalization and the immune response to EBV infection.


Pssm-ID: 282817  Cd Length: 254  Bit Score: 424.74  E-value: 8.64e-143
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615   139 MAIRQAIRDRRRNPASRRDQAKWRLQTLAAGWPMGYQAYSSWMYSYTDHQTTPTFVHLQATLGCTGGRRCHVTFSAGTFK 218
Cdd:pfam05009   1 MAIRQRIQDIRRNPLSRVDQRKWRLQSLAASWPMGYRTYSLWMYSYTDHQTTPTFVHLTATLGCTGGRRCHVTFSAGTFK 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615   219 LPRCTPGDRQWLYVQSSVGNIVQSCNPRYSIFFDYMAIHRSLTKIWEEVLTPDQRVSFMEFLGFLQRTDLSYIKSFVSDA 298
Cdd:pfam05009  81 LPRCTPGDQQWLYVQSSVRNIRQSCNPRYSIFFDLMAIHRSLTKIWEELLTPDNRVSFMEFLGFLQRTDLSYIKSWFSDA 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615   299 LGTTSIQTPWIDDNP------STETAQAWNAGFLRGRAYGIDLLRTEGEHVEGATGETREESEDTESDGDDEDLPCIVSR 372
Cdd:pfam05009 161 LGTTKIQTPWIDANPnenpyhSTETAQAINAAFLRGQAYGIDLLRTEGEPVEGATGETREESEDTESESDDEELPCIVPR 240
                         250
                  ....*....|..
gi 23893615   373 GGPKVKRPPIFI 384
Cdd:pfam05009 241 GGPVVKRPPIFI 252
Amelin smart00817
Ameloblastin precursor (Amelin); This family consists of several mammalian Ameloblastin ...
607-738 2.99e-03

Ameloblastin precursor (Amelin); This family consists of several mammalian Ameloblastin precursor (Amelin) proteins. Matrix proteins of tooth enamel consist mainly of amelogenin but also of non-amelogenin proteins, which, although their volumetric percentage is low, have an important role in enamel mineralisation. One of the non-amelogenin proteins is ameloblastin, also known as amelin and sheathlin. Ameloblastin (AMBN) is one of the enamel sheath proteins which is though to have a role in determining the prismatic structure of growing enamel crystals.


Pssm-ID: 214832 [Multi-domain]  Cd Length: 411  Bit Score: 41.03  E-value: 2.99e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615    607 EAQVKQASVEVQPPQLTQVSPQQPMEGPLVPEQQMfPGAPFSQVADVVRAPgVPAMQP-----QYFDLPLIQPisQGAPv 681
Cdd:smart00817  85 ETQQYEYSLPVHPPPLPSQPSLQPQQPGLKPFLQP-TALPTNQATPQKNGP-QPPMHLgqpplQQAELPMIPP--QVAP- 159
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 23893615    682 aplrASMGPVPPVPATQPQYFDIPLTEPInqgasaAHFLPQQPMegPLVPEQWMFPG 738
Cdd:smart00817 160 ----SDKPPQTELPLYDFADPQNPLLFQI------AHLMSRGPM--PQNKQQHLYPG 204
 
Name Accession Description Interval E-value
PHA03379 PHA03379
EBNA-3A; Provisional
1-944 0e+00

EBNA-3A; Provisional


Pssm-ID: 223066 [Multi-domain]  Cd Length: 935  Bit Score: 1570.82  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615    1 MDKDRPGPPAlDDNMEEEVPSTSVVQEQVSAGDWENVLIELSDSSSEKEAEDAHLEPAQKGTKRKRVDHDAGGSAPARPM 80
Cdd:PHA03379   1 MDKDRPGLPA-PDDNIEEVPSTSGVQEQASGGDWENVLIEDSDSSSEEEAEDAHLEPPQKGKKRKRVDDDAGGSAPAQPP 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615   81 LPPQPDLPGREAILRRFPLDLRTLLQAIGAAATRIDTRAIDQFFGSQISNTEMYIMYAMAIRQAIRDRRRNPASRRDQAK 160
Cdd:PHA03379  80 CPPQLDLPGREAILGRFPLDLRKLLQAIGAAATHPDTRAIDQFFGSQISNTQRYLMYAMAIRQAIRDRRRNPASRRCQNK 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615  161 WRLQTLAAGWPMGYQAYSSWMYSYTDHQTTPTFVHLQATLGCTGGRRCHVTFSAGTFKLPRCTPGDRQWLYVQSSVGNIV 240
Cdd:PHA03379 160 WRLTTLAAGWPMGYQAYSSWMYSYTDDQRTPTRIHLQATLGCEEGRRCHVTFSAGTFKPPRCSPGDRQWLYVQSCVGELV 239
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615  241 QSCNPRYSIFFDYMAIHRSLTKIWEEVLTPDQRVSFMEFLGFLQRTDLSYIKSFVSDALGTTSIQTPWIDDNPSTETAQA 320
Cdd:PHA03379 240 QSCNPIYSIFFDYMAIHRSLTKIWEEVLTPDQRVPFMEFLGFLQRTDLIYIKSFVSEALGTTSIQTPWLDENPSTETAQA 319
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615  321 WNAGFLRGRAYGIDLLRTEGEHVEGATGETREESEDTESDGDDEDLPCIVSRGGPKVKRPPIFIRRLHRLLLMRAGKRTE 400
Cdd:PHA03379 320 WNAGLLRGRAYGLDLLRTEGEHDEGATGETREESEDTESDGDDEELPRIVSREGTKRKRPPIFLRRLHRLLLMRAGKLTE 399
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615  401 QGKEVLEKARGSTYGTPRPPVPKPRPEVPQSDETATSHGSAQVPEPPTIHLAAQGmayPLHEQHGMAPCPVAQAPPTPLP 480
Cdd:PHA03379 400 RAREALEKASEPTYGTPRPPVEKPRPEVPQSLETATSHGSAQVPEPPPVHDLEPG---PLHDQHSMAPCPVAQLPPGPLQ 476
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615  481 PVSPGDQLPGVFSDGRVACAPVPAPAGPIVRPWEPSLTQAAGQAFAPVRPQHMPVEPVPVPTVALERpvypkPVRPAPPK 560
Cdd:PHA03379 477 DLEPGDQLPGVVQDGRPACAPVPAPAGPIVRPWEASLSQVPGVAFAPVMPQPMPVEPVPVPTVALER-----PVCPAPPL 551
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615  561 IAMQGPGETSGIRRARERWRPAPWTPNPPRSPSQMSVRDRLARLRAEAQVKQASVEVQPPQLTQVSPQQPMEGPLVPEQQ 640
Cdd:PHA03379 552 IAMQGPGETSGIVRVRERWRPAPWTPNPPRSPSQMSVRDRLARLRAEAQPYQASVEVQPPQLTQVSPQQPMEYPLEPEQQ 631
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615  641 MFPGAPFSQVADVVRAPGVPAMQPQYFDLPLIQPISQGAPVAPLRASMGPVPPVPATQPQYFDIPLTEPINQGASAAHFL 720
Cdd:PHA03379 632 MFPGSPFSQVADVMRAGGVPAMQPQYFDLPLQQPISQGAPLAPLRASMGPVPPVPATQPQYFDIPLTEPINQGASAAHFL 711
                        730       740       750       760       770       780       790       800
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615  721 PQQPMEGPLVPEQWMFPGAALSQSVRPGVAQSQYFDLPLTQPINHGAPAAHFLHQPPMEGPWVPEQWMFQGAPPSQGTDV 800
Cdd:PHA03379 712 PQQPMEGPLVPERWMFQGATLSQSVRPGVAQSQYFDLPLTQPINHGAPAAHFLHQPPMEGPWVPEQWMFQGAPPSQGTDV 791
                        810       820       830       840       850       860       870       880
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615  801 VQHQLDALGYTLHGLNHPGVPVSPAVNQYHLSQAAFGLPIDEDESGEGSDTSEPCEALDLSIHGRPCPQAPEWPVQEEGG 880
Cdd:PHA03379 792 VQHQLDALGYVLHVLNHPGVPVSPAVNQYHVSQAAFGLPIDEDESGEGSDTSEPCEALDLSIHGRPCPQAPEWPVQGEGG 871
                        890       900       910       920       930       940
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 23893615  881 QDATEVLDLSIHGRPRPRTPEWPVQGEGGQNVTGPETRRVVVSAVVHMCQDDEFPDLQDPPDEA 944
Cdd:PHA03379 872 QDATEVLDLSIHGRPRPRTPEWPVQGEDGQNVTGAESRRVVVSALVHMCQDDEFPDLQDPPDEA 935
EBV-NA3 pfam05009
Epstein-Barr virus nuclear antigen 3 (EBNA-3); This family contains EBNA-3A, -3B, and -3C ...
139-384 8.64e-143

Epstein-Barr virus nuclear antigen 3 (EBNA-3); This family contains EBNA-3A, -3B, and -3C which are latent infection nuclear proteins important for Epstein-Barr virus (EBV)-induced B-cell immortalization and the immune response to EBV infection.


Pssm-ID: 282817  Cd Length: 254  Bit Score: 424.74  E-value: 8.64e-143
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615   139 MAIRQAIRDRRRNPASRRDQAKWRLQTLAAGWPMGYQAYSSWMYSYTDHQTTPTFVHLQATLGCTGGRRCHVTFSAGTFK 218
Cdd:pfam05009   1 MAIRQRIQDIRRNPLSRVDQRKWRLQSLAASWPMGYRTYSLWMYSYTDHQTTPTFVHLTATLGCTGGRRCHVTFSAGTFK 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615   219 LPRCTPGDRQWLYVQSSVGNIVQSCNPRYSIFFDYMAIHRSLTKIWEEVLTPDQRVSFMEFLGFLQRTDLSYIKSFVSDA 298
Cdd:pfam05009  81 LPRCTPGDQQWLYVQSSVRNIRQSCNPRYSIFFDLMAIHRSLTKIWEELLTPDNRVSFMEFLGFLQRTDLSYIKSWFSDA 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615   299 LGTTSIQTPWIDDNP------STETAQAWNAGFLRGRAYGIDLLRTEGEHVEGATGETREESEDTESDGDDEDLPCIVSR 372
Cdd:pfam05009 161 LGTTKIQTPWIDANPnenpyhSTETAQAINAAFLRGQAYGIDLLRTEGEPVEGATGETREESEDTESESDDEELPCIVPR 240
                         250
                  ....*....|..
gi 23893615   373 GGPKVKRPPIFI 384
Cdd:pfam05009 241 GGPVVKRPPIFI 252
PHA03378 PHA03378
EBNA-3B; Provisional
116-797 1.74e-22

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 103.99  E-value: 1.74e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615  116 DTRAIDQFFGSQISNTEMYIMYAMAIRQAIRDRRRNPASRRDQAKWRLQTLAAGWPMGYQAYSSWMYSYTDHQTTPTFVH 195
Cdd:PHA03378 122 DLRHLGSLFLEQNLNIEEFIWMCMTVRHRCQAIREKPLPIAKQRRWKLLSPQRTWRMGYRTRHLMVNSFELGGDSVHPVL 201
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615  196 LQATLGCTGGRRCHVTFSAGTFKLPRCTPGDRQWLYVQSSVGNIVQSCNPRYSIFFDYMAIHRSLTKIWEEVLTPDqRVS 275
Cdd:PHA03378 202 VTATLGCEEGERHAVTYSAGIVQPPRMSDQNQKIETAFLMARRARSLSAERYTLFFDLVSSGNTLYAIWIGLGTRN-RVA 280
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615  276 FMEFLGFLQRTDLSYIKSFVSDALGTTSIQTPWIDDNP------STETAQAWNAGFLRGRAYGIDLLRTEGEHVEGATGE 349
Cdd:PHA03378 281 FVEFVGWLCKKDHTHIREWFRQCTGRPRPTKPWLRAHPvavpydDPLTSEEIDLAYARGLAMEIEAVRLPDDPIIVEDDD 360
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615  350 TREESEDtESDGDDED--------LPCIVSRGGPKVKRPPIFirrlhrlLLMRAGKRTEQGKEVL----------EKARG 411
Cdd:PHA03378 361 ESEEIES-ECDPDEDKsgaealasIPQTLPDPPTVYGRPKVF-------ARKADLKSTKKCRAIVtdpsvikaieEEHRK 432
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615  412 STYGtprPPVPKPRPEVPQSDETATSHGSAQVPEPPTIHLAAQGMAYPLHEQHGMAPCPVAQAPPTPLPPVSPGDQLPGV 491
Cdd:PHA03378 433 KKAA---RTEQPRATPHSQAPTVVLHRPPTQPLEGPTGPLSVQAPLEPWQPLPHPQVTPVILHQPPAQGVQAHGSMLDLL 509
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615  492 FSDGRVACAPVPAPAGPIVrPWEPSLTQAAGQAFapvRPQHMPVEPVPVPTVALERPVYPKPvRPAPPKIAMQGPGETSG 571
Cdd:PHA03378 510 EKDDEDMEQRVMATLLPPS-PPQPRAGRRAPCVY---TEDLDIESDEPASTEPVHDQLLPAP-GLGPLQIQPLTSPTTSQ 584
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615  572 IRRARERWRPAPW-TPNPPRSPSQMSVRdrlARLRAEAQVKQASVEVQPPQLTQVSPQQ-PMEGPLVPEQQMFPGAPFSQ 649
Cdd:PHA03378 585 LASSAPSYAQTPWpVPHPSQTPEPPTTQ---SHIPETSAPRQWPMPLRPIPMRPLRMQPiTFNVLVFPTPHQPPQVEITP 661
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615  650 VADVVRAPGVPAMQPQYFDLPLIQPIS------QGAPVAPLRASMGPVPPVPATQPQYFDIPLTEPinQGASAAHFLPQQ 723
Cdd:PHA03378 662 YKPTWTQIGHIPYQPSPTGANTMLPIQwapgtmQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPP--AAAPGRARPPAA 739
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615  724 ---PMEGPLVPEQWMFPGAALSQSVRPGVA---------QSQYFDLPLTQPinHGAPAAhflhQPPMEGPWVPEQWMFQG 791
Cdd:PHA03378 740 apgRARPPAAAPGRARPPAAAPGRARPPAAapgaptpqpPPQAPPAPQQRP--RGAPTP----QPPPQAGPTSMQLMPRA 813

                 ....*.
gi 23893615  792 APPSQG 797
Cdd:PHA03378 814 APGQQG 819
PHA03377 PHA03377
EBNA-3C; Provisional
98-807 3.05e-16

EBNA-3C; Provisional


Pssm-ID: 177614 [Multi-domain]  Cd Length: 1000  Bit Score: 83.95  E-value: 3.05e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615    98 PLDLRTLLQAIGAAATRIDTRAIDQFFGSQISNTEMYIMYAMAIRQAIRDRRRNPASRRDQAKWR---LQTLAAGWPMGY 174
Cdd:PHA03377  105 PYSARNIRDAACEAVKQSHLQALSNLILDSGLDTQHMLCFVMAARQRLQDIRRGPLVAEGGVGWRhwlLTSPSVSWYMGY 184
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615   175 QAYSSWMYSYTDHQTTPTFVHLQATLGCTGGRRCHVTFSAGTFKLPRCTPGDRQWLYVQSSVGNIVQSCNPRYSIFFDYM 254
Cdd:PHA03377  185 RTATLRTLTPVPNRVGADSIMLTATFGCQNGARNENTFSATVWTPPLAGPREQERYAREAEVRFLRGKWQRRYRRIFDLI 264
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615   255 AIHRSLTKIWEEVL-TPDQRVSFMEFLGFLQRTDLSYIKSFVSDALGTTSIQTPWidDNPSTETA---------QAWNAG 324
Cdd:PHA03377  265 ELCGSLHHIWQNRLqTEENLLDFVRFMGVMSSCNNPAVNYWFHKTIGNFKPYYPW--NAPPNENPyharrgikeDVIQTA 342
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615   325 FLRGRAYGIDLLRTEGEHVEGATGETREESE------DTESDGDDEDLPCIVSRGGPKVKRPPIFIRRLHRLLLmragkR 398
Cdd:PHA03377  343 FRKAQRQGLSMLATGGEPRGDATSETSSDEDtgrqgsDVELESSDDELPYIDPNMEPVQQRPVMFVSRVPWRKP-----R 417
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615   399 TEQGKEVLEKARGSTYGTPRPPVPKPRPEVPQSDETATSHGSAQVPEPPtiHLAAQGMAYPLHEQHGMAPCPVAQAPPTP 478
Cdd:PHA03377  418 TLPWPTPKTHPVKRTLVKTSGRSDEAEQAQSTPERPGPSDQPSVPVEPA--HLTPVEHTTVILHQPPQSPPTVAIKPAPP 495
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615   479 LPPVSPGdqlpgvfsdgrvACApvpAPAGPIVRPWEPSLTQAAGQAFAPVRPQHMPVEPVPVPTVALERPVYP--KPVRP 556
Cdd:PHA03377  496 PSRRRRG------------ACV---VYDDDIIEVIDVETTEEEESVTQPAKPHRKVQDGFQRSGRRQKRATPPkvSPSDR 560
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615   557 APPKIAMQGPGETSGIRRARERWRPAPWTPNPPRS-PSQMSVRDRLARLRAEAQVKQASV---EVQPPQLTQVSPQQPME 632
Cdd:PHA03377  561 GPPKASPPVMAPPSTGPRVMATPSTGPRDMAPPSTgPRQQAKCKDGPPASGPHEKQPPSSaprDMAPSVVRMFLRERLLE 640
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615   633 GPLVPEQQMFPGAPFSQVADVVRAPgvPAMQpqyfdlplIQPISQGAPVAPLRA-SMGPVPPVPATQPQYFDI----PL- 706
Cdd:PHA03377  641 QSTGPKPKSFWEMRAGRDGSGIQQE--PSSR--------RQPATQSTPPRPSWLpSVFVLPSVDAGRAQPSEEshlsSMs 710
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615   707 -TEPINQGASAAHFLPQQPMEGPLVPEQWMFPGaalSQSVRPGvaqsqYFDLPLTQpinhgAPAAHFLHQPPMEGPWVPE 785
Cdd:PHA03377  711 pTQPISHEEQPRYEDPDDPLDLSLHPDQAPPPS---HQAPYSG-----HEEPQAQQ-----APYPGYWEPRPPQAPYLGY 777
                         730       740
                  ....*....|....*....|..
gi 23893615   786 QwmfqgAPPSQGTDVVQHQLDA 807
Cdd:PHA03377  778 Q-----EPQAQGVQVSSYPGYA 794
PHA03247 PHA03247
large tegument protein UL36; Provisional
501-797 1.97e-08

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 58.80  E-value: 1.97e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615   501 PVPAPAGPIVRPWE--PSLTQAAGQAFAPVRPQHMPVEPVPVPTVALERPVYPKPVRPAPPKIAMQGPGETSGIRRARER 578
Cdd:PHA03247 2652 PRDDPAPGRVSRPRraRRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQA 2731
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615   579 WRPAPWTPNPPRSPSQMSVRDRLARlRAEAQVKQASVEVQPPQLTQVSPQQPMEGPlvpeqqmfPGAPFSQVADVVRAPG 658
Cdd:PHA03247 2732 SPALPAAPAPPAVPAGPATPGGPAR-PARPPTTAGPPAPAPPAAPAAGPPRRLTRP--------AVASLSESRESLPSPW 2802
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615   659 VPAMQPQYFDLPLIQPISQGAPVAPLRASMGPVPPVPATQPQYFdiPLTEPINQGASAAHFLPQQPMEGPLVPEQWMFPG 738
Cdd:PHA03247 2803 DPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPP--PPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPAR 2880
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615   739 AALSQSVRPGVAQS-QYFDLPLTQPINHGAPAAhflHQPPMEGPWVPEQWMFQGAPPSQG 797
Cdd:PHA03247 2881 PPVRRLARPAVSRStESFALPPDQPERPPQPQA---PPPPQPQPQPPPPPQPQPPPPPPP 2937
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
581-784 1.24e-06

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 52.35  E-value: 1.24e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615   581 PAPWTPNPPRSPSQ--------MSVRDRLARLRAEAQVKQAsvevQPPQLTQVSPQQPmegplvPEQQMFPGAPFSQvad 652
Cdd:pfam09770 172 APAPAPQPAAQPASlpapsrkmMSLEEVEAAMRAQAKKPAQ----QPAPAPAQPPAAP------PAQQAQQQQQFPP--- 238
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615   653 vvraPGVPAMQPQYFDLPLIQPISQGAPVAPLR--ASMGPVPPVPATQPQyfdipltepinqgasaAHFLPQQPmegplv 730
Cdd:pfam09770 239 ----QIQQQQQPQQQPQQPQQHPGQGHPVTILQrpQSPQPDPAQPSIQPQ----------------AQQFHQQP------ 292
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 23893615   731 PEQWMFPGAALSQSVRPGVAQSQYFDLPltQPINHGAPAAHFLHQPPMEGPWVP 784
Cdd:pfam09770 293 PPVPVQPTQILQNPNRLSAARVGYPQNP--QPGVQPAPAHQAHRQQGSFGRQAP 344
PHA03247 PHA03247
large tegument protein UL36; Provisional
496-699 5.37e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 50.71  E-value: 5.37e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615   496 RVACAPVPAPAGPIVRPWEPSLTQAAGQAFAPVRPQHMPVEPVPVPTVALERPVYPKPVRPAPPKIAMQGPGETSGIRRA 575
Cdd:PHA03247 2785 RPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRR 2864
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615   576 RERWRPAPWTP-NPPRSPSQMSVRDRLAR------LRAEAQVKQASVEVQPPQLTQVSPQQPMEGPLVPEQQMFPGAPFS 648
Cdd:PHA03247 2865 RPPSRSPAAKPaAPARPPVRRLARPAVSRstesfaLPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLA 2944
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 23893615   649 QVADVVRAPGVPAMQPQyfdlPLIQPISQGAPVAPLRASMGPVPPVPATQP 699
Cdd:PHA03247 2945 PTTDPAGAGEPSGAVPQ----PWLGALVPGRVAVPRFRVPQPAPSREAPAS 2991
PHA03247 PHA03247
large tegument protein UL36; Provisional
465-793 4.99e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 47.63  E-value: 4.99e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615   465 GMAPCPVAQAPPTPLPPVSPGDQLPGVFSDGRV-------------------------------ACAPVPA------PAG 507
Cdd:PHA03247 2493 GAAPDPGGGGPPDPDAPPAPSRLAPAILPDEPVgepvhprmltwirgleelasddagdpppplpPAAPPAApdrsvpPPR 2572
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615   508 PIVRPWEPSLTQAAGQAFAPVRPQHMPVEPVPVPTvalerPVYPKPVRPAPPKIAMQGPGETSGIRRARERWRPAPWTPN 587
Cdd:PHA03247 2573 PAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGD-----PRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVP 2647
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615   588 PPRSPSQMSVRDRLARLRAEAQVKQASVEVQPPQLTQVSPQQPMEGPLV-----PEQQMFPGAPFSQVADVVRAPGVPAM 662
Cdd:PHA03247 2648 PPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTsladpPPPPPTPEPAPHALVSATPLPPGPAA 2727
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615   663 QPQYFDLPLIQPISQGAPVAPL-----------RASMGPVPPVPATQPQYFDIP-LTEPINQGASAAHFLPQQPMEGPLV 730
Cdd:PHA03247 2728 ARQASPALPAAPAPPAVPAGPAtpggparparpPTTAGPPAPAPPAAPAAGPPRrLTRPAVASLSESRESLPSPWDPADP 2807
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 23893615   731 PEQWMFPGAALSQSVRPGvaqsqyfdlPLTQPINHGAPAAHFLHQPPMEGPWVPEQWMFQGAP 793
Cdd:PHA03247 2808 PAAVLAPAAALPPAASPA---------GPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGD 2861
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
559-786 4.12e-04

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 44.37  E-value: 4.12e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615   559 PKIAMQGPGETSGIRRARERWRPAPW---TPNPPRSPSQMSVRDRLARLRAEAQvkQASVEVQPPQL-TQVSPQQPMEGP 634
Cdd:pfam03154 110 PNSPSEGEGESSDGRSVNDEGSSDPKdidQDNRSTSPSIPSPQDNESDSDSSAQ--QQILQTQPPVLqAQSGAASPPSPP 187
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615   635 LVPEQQMFPGAPFSQVADVVRAPGVPAMQPQYFDLPLIQP---ISQGAPVAPLRASMGPVPPVPATQPQyfdIPLTEPIN 711
Cdd:pfam03154 188 PPGTTQAATAGPTPSAPSVPPQGSPATSQPPNQTQSTAAPhtlIQQTPTLHPQRLPSPHPPLQPMTQPP---PPSQVSPQ 264
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 23893615   712 QGASAAHFLPQQPMEGPLV--PEQWMFPGAALSQSVRPGVAQSQYFDLPLTQPinhGAPAAHFLHQPPMEGPWVPEQ 786
Cdd:pfam03154 265 PLPQPSLHGQMPPMPHSLQtgPSHMQHPVPPQPFPLTPQSSQSQVPPGPSPAA---PGQSQQRIHTPPSQSQLQSQQ 338
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
500-693 1.01e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 42.94  E-value: 1.01e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615  500 APVPAPAGPIVRPWEPSltqAAGQAFAPVRPQHMPVEPVPVPTVALERPVYPKPVRPAPPKIAMQGPGETSGIRRARERW 579
Cdd:PRK12323 373 GPATAAAAPVAQPAPAA---AAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPA 449
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615  580 R-------PAPWTPNPPRSPSQMSVRDRLARLRAEAQVKQASVEVQPPQLTQVSPQQPMEGPlvpeQQMFPGAPFSQVAD 652
Cdd:PRK12323 450 PapapaaaPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAP----AQPDAAPAGWVAES 525
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 23893615  653 VVRapgvPAMQPQYFDLPLIQPISQGAPVAPLRASMGPVPP 693
Cdd:PRK12323 526 IPD----PATADPDDAFETLAPAPAAAPAPRAAAATEPVVA 562
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
582-799 2.86e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 41.40  E-value: 2.86e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615  582 APWTPNPPRSPSQMSVRDRLARLRAEAQVKQASVEVQPPQLTQVSPQQPMEGPLVPEQQMFPGAPFSQVADVVRAPGVPA 661
Cdd:PRK12323 380 APVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPA 459
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615  662 mqpqyfdlPLIQPISQGAPVAPLRASMGPVPPVPATQPQyfdipltePINQGASAAHFLPQQPMEGPLVPEQWMFPGAAL 741
Cdd:PRK12323 460 --------AAARPAAAGPRPVAAAAAAAPARAAPAAAPA--------PADDDPPPWEELPPEFASPAPAQPDAAPAGWVA 523
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 23893615  742 SQSVRPGVAQSqyfdlPLTQPINHGAPAAhflhqPPMEGPWVPEQWMFQGAPPSQGTD 799
Cdd:PRK12323 524 ESIPDPATADP-----DDAFETLAPAPAA-----APAPRAAAATEPVVAPRPPRASAS 571
Amelin smart00817
Ameloblastin precursor (Amelin); This family consists of several mammalian Ameloblastin ...
607-738 2.99e-03

Ameloblastin precursor (Amelin); This family consists of several mammalian Ameloblastin precursor (Amelin) proteins. Matrix proteins of tooth enamel consist mainly of amelogenin but also of non-amelogenin proteins, which, although their volumetric percentage is low, have an important role in enamel mineralisation. One of the non-amelogenin proteins is ameloblastin, also known as amelin and sheathlin. Ameloblastin (AMBN) is one of the enamel sheath proteins which is though to have a role in determining the prismatic structure of growing enamel crystals.


Pssm-ID: 214832 [Multi-domain]  Cd Length: 411  Bit Score: 41.03  E-value: 2.99e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615    607 EAQVKQASVEVQPPQLTQVSPQQPMEGPLVPEQQMfPGAPFSQVADVVRAPgVPAMQP-----QYFDLPLIQPisQGAPv 681
Cdd:smart00817  85 ETQQYEYSLPVHPPPLPSQPSLQPQQPGLKPFLQP-TALPTNQATPQKNGP-QPPMHLgqpplQQAELPMIPP--QVAP- 159
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 23893615    682 aplrASMGPVPPVPATQPQYFDIPLTEPInqgasaAHFLPQQPMegPLVPEQWMFPG 738
Cdd:smart00817 160 ----SDKPPQTELPLYDFADPQNPLLFQI------AHLMSRGPM--PQNKQQHLYPG 204
PHA03377 PHA03377
EBNA-3C; Provisional
500-714 4.97e-03

EBNA-3C; Provisional


Pssm-ID: 177614 [Multi-domain]  Cd Length: 1000  Bit Score: 40.81  E-value: 4.97e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615   500 APVPAPAGPIVRPWEPSLTQAAGQAF-APVRPQHMPVEPVPVPTVALERPVYPKPVRPAPPKIAMQgpgetsgirRARER 578
Cdd:PHA03377  739 APPPSHQAPYSGHEEPQAQQAPYPGYwEPRPPQAPYLGYQEPQAQGVQVSSYPGYAGPWGLRAQHP---------RYRHS 809
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23893615   579 WrpAPWTPNPPRSPSQMSVRDRLARLRAEAQvkqASVEVQPPQLTQVSPQQPMEGPLVPEQQMFPGAPFSQVADVVRAPG 658
Cdd:PHA03377  810 W--AYWSQYPGHGHPQGPWAPRPPHLPPQWD---GSAGHGQDQVSQFPHLQSETGPPRLQLSQVPQLPYSQTLVSSSAPS 884
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 23893615   659 VPAMQPQYFDLPLiqPISQGAPVAPLRASMGPVPPVPATqpQYFDIPLTEPINQGA 714
Cdd:PHA03377  885 WSSPQPRAPIRPI--PTRFPPPPMPLQDSMAVGCDSSGT--ACPSMPFASDYSQGA 936
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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