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Conserved domains on  [gi|1934859775|emb|CAD7112397|]
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ORF 2 gene [European brown hare syndrome virus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF840 super family cl05397
Lagovirus protein of unknown function (DUF840); This family consists of several Lagovirus ...
 1-113 7.19e-27

Lagovirus protein of unknown function (DUF840); This family consists of several Lagovirus sequences of unknown function, largely from rabbit hemorrhagic disease virus.


The actual alignment was detected with superfamily member pfam05801:

Pssm-ID: 461744  Cd Length: 113  Bit Score: 95.60  E-value: 7.19e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934859775   1 MSDFLGLALAGASTLSSALLRSQELALQKQALESGILLKAKQLSQLGFNPYEVKGLLVNSrgsseNFRLSNMHNDSSVVN 80
Cdd:pfam05801   5 IGEFIAGAGAGAGALLNALELQLEKQAMENALELGADLKADLGFNLGENKNEIKGNIFGN-----NFRLNNMHNDAHNDA 79

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1934859775  81 SYSVFNPVSNGIRSKIKSFNNSVKIYNTTGESN 113
Cdd:pfam05801  80 AVNNANNASNGARKGIKKKIKSLKISNKIGESS 112
 
Name Accession Description Interval E-value
DUF840 pfam05801
Lagovirus protein of unknown function (DUF840); This family consists of several Lagovirus ...
 1-113 7.19e-27

Lagovirus protein of unknown function (DUF840); This family consists of several Lagovirus sequences of unknown function, largely from rabbit hemorrhagic disease virus.


Pssm-ID: 461744  Cd Length: 113  Bit Score: 95.60  E-value: 7.19e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934859775   1 MSDFLGLALAGASTLSSALLRSQELALQKQALESGILLKAKQLSQLGFNPYEVKGLLVNSrgsseNFRLSNMHNDSSVVN 80
Cdd:pfam05801   5 IGEFIAGAGAGAGALLNALELQLEKQAMENALELGADLKADLGFNLGENKNEIKGNIFGN-----NFRLNNMHNDAHNDA 79

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1934859775  81 SYSVFNPVSNGIRSKIKSFNNSVKIYNTTGESN 113
Cdd:pfam05801  80 AVNNANNASNGARKGIKKKIKSLKISNKIGESS 112
 
Name Accession Description Interval E-value
DUF840 pfam05801
Lagovirus protein of unknown function (DUF840); This family consists of several Lagovirus ...
 1-113 7.19e-27

Lagovirus protein of unknown function (DUF840); This family consists of several Lagovirus sequences of unknown function, largely from rabbit hemorrhagic disease virus.


Pssm-ID: 461744  Cd Length: 113  Bit Score: 95.60  E-value: 7.19e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934859775   1 MSDFLGLALAGASTLSSALLRSQELALQKQALESGILLKAKQLSQLGFNPYEVKGLLVNSrgsseNFRLSNMHNDSSVVN 80
Cdd:pfam05801   5 IGEFIAGAGAGAGALLNALELQLEKQAMENALELGADLKADLGFNLGENKNEIKGNIFGN-----NFRLNNMHNDAHNDA 79

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1934859775  81 SYSVFNPVSNGIRSKIKSFNNSVKIYNTTGESN 113
Cdd:pfam05801  80 AVNNANNASNGARKGIKKKIKSLKISNKIGESS 112
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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