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Conserved domains on  [gi|2002384799|emb|CAF7643796|]
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unnamed protein product, partial [Gephyrocapsa muellerae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SMC_N super family cl47134
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ...
 139-394 1.48e-11

RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


The actual alignment was detected with superfamily member TIGR02169:

Pssm-ID: 481474 [Multi-domain]  Cd Length: 1164  Bit Score: 66.24  E-value: 1.48e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799  139 LREECAALERA-KESSERTLVSLPGEIASLRDSAETLEAELAELRPAIAIFTDEQADLLARKEGLEGQLTDATSEHRSRC 217
Cdd:TIGR02169  263 LEKRLEEIEQLlEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELE 342

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799  218 AALEEARSRVAELSAELQSTSAALAASDAELAKLAREKGETAAALEPLPERLELARSKAAEAAESLAALQERREAMSSEL 297
Cdd:TIGR02169  343 REIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEEL 422

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799  298 EEGSAALTSRLAAYESEREALRIARLELARVRKERNVVAEESAAATQEAADSEELAKALRKEIETLKTEAPALEARRAHA 377
Cdd:TIGR02169  423 ADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARAS 502

                          250
                   ....*....|....*..
gi 2002384799  378 TSALEEALAAVELFENG 394
Cdd:TIGR02169  503 EERVRGGRAVEEVLKAS 519
 
Name Accession Description Interval E-value
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 139-394 1.48e-11

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 66.24  E-value: 1.48e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799  139 LREECAALERA-KESSERTLVSLPGEIASLRDSAETLEAELAELRPAIAIFTDEQADLLARKEGLEGQLTDATSEHRSRC 217
Cdd:TIGR02169  263 LEKRLEEIEQLlEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELE 342

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799  218 AALEEARSRVAELSAELQSTSAALAASDAELAKLAREKGETAAALEPLPERLELARSKAAEAAESLAALQERREAMSSEL 297
Cdd:TIGR02169  343 REIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEEL 422

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799  298 EEGSAALTSRLAAYESEREALRIARLELARVRKERNVVAEESAAATQEAADSEELAKALRKEIETLKTEAPALEARRAHA 377
Cdd:TIGR02169  423 ADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARAS 502

                          250
                   ....*....|....*..
gi 2002384799  378 TSALEEALAAVELFENG 394
Cdd:TIGR02169  503 EERVRGGRAVEEVLKAS 519
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 139-390 2.18e-11

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 65.73  E-value: 2.18e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 139 LREECAALERAKESSERTLVSLPGEIASLRDSAETLEAELAELRPAIAIFTDEQADLLARKEGLEGQLTDATSEHRSRCA 218
Cdd:COG1196   251 LEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEE 330

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 219 ALEEARSRVAELSAELQSTSAALAASDAELAKLAREKGETAAALEPLPERLELARSKAAEAAESLAALQERREamssELE 298
Cdd:COG1196   331 ELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLE----ELE 406

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 299 EGSAALTSRLAAYESEREALRIARLELARVRKERnvvAEESAAATQEAADSEELAKALRKEIETLKTEAPALEARRAHAT 378
Cdd:COG1196   407 EAEEALLERLERLEEELEELEEALAELEEEEEEE---EEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELL 483

                         250
                  ....*....|..
gi 2002384799 379 SALEEALAAVEL 390
Cdd:COG1196   484 EELAEAAARLLL 495
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
139-393 8.38e-08

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 54.28  E-value: 8.38e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 139 LREECAALERAKESSERTLVSLPGEIASLRDSAETLEAELAELR-------PAIAIFTDEQADLLARKEGLEGQLTD--- 208
Cdd:PRK02224  256 LEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLaeaglddADAEAVEARREELEDRDEELRDRLEEcrv 335

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 209 ATSEHRSRCAALEEARSRVAELSAELQSTSAALaasDAELAKLAREKGETAAALEPLPERLELARSKAAEAAESLAALQE 288
Cdd:PRK02224  336 AAQAHNEEAESLREDADDLEERAEELREEAAEL---ESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAED 412

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 289 RREAMSSELEEGSAALTSRLAAYESEREALRIARLELARVRKERNVVAEESAAATQEAADSEELAKALRKEIETLKTEAP 368
Cdd:PRK02224  413 FLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVE 492

                         250       260
                  ....*....|....*....|....*
gi 2002384799 369 ALEARRAHATSALEEALAAVELFEN 393
Cdd:PRK02224  493 EVEERLERAEDLVEAEDRIERLEER 517
 
Name Accession Description Interval E-value
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 139-394 1.48e-11

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 66.24  E-value: 1.48e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799  139 LREECAALERA-KESSERTLVSLPGEIASLRDSAETLEAELAELRPAIAIFTDEQADLLARKEGLEGQLTDATSEHRSRC 217
Cdd:TIGR02169  263 LEKRLEEIEQLlEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELE 342

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799  218 AALEEARSRVAELSAELQSTSAALAASDAELAKLAREKGETAAALEPLPERLELARSKAAEAAESLAALQERREAMSSEL 297
Cdd:TIGR02169  343 REIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEEL 422

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799  298 EEGSAALTSRLAAYESEREALRIARLELARVRKERNVVAEESAAATQEAADSEELAKALRKEIETLKTEAPALEARRAHA 377
Cdd:TIGR02169  423 ADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARAS 502

                          250
                   ....*....|....*..
gi 2002384799  378 TSALEEALAAVELFENG 394
Cdd:TIGR02169  503 EERVRGGRAVEEVLKAS 519
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 139-390 2.18e-11

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 65.73  E-value: 2.18e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 139 LREECAALERAKESSERTLVSLPGEIASLRDSAETLEAELAELRPAIAIFTDEQADLLARKEGLEGQLTDATSEHRSRCA 218
Cdd:COG1196   251 LEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEE 330

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 219 ALEEARSRVAELSAELQSTSAALAASDAELAKLAREKGETAAALEPLPERLELARSKAAEAAESLAALQERREamssELE 298
Cdd:COG1196   331 ELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLE----ELE 406

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 299 EGSAALTSRLAAYESEREALRIARLELARVRKERnvvAEESAAATQEAADSEELAKALRKEIETLKTEAPALEARRAHAT 378
Cdd:COG1196   407 EAEEALLERLERLEEELEELEEALAELEEEEEEE---EEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELL 483

                         250
                  ....*....|..
gi 2002384799 379 SALEEALAAVEL 390
Cdd:COG1196   484 EELAEAAARLLL 495
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 139-411 2.46e-11

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 65.73  E-value: 2.46e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 139 LREECAALERAKESSERTLVSLPGEIASLRDSAETLEAELAELRPAIAIFTDEQADLLARKEGLEGQLTDATSEHRSRCA 218
Cdd:COG1196   258 LEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEE 337

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 219 ALEEARSRVAELSAELQSTSAALAASDAELAKLAREKGETAAALEPLPERLELARSKAAEAAESLAALQERREAMSSELE 298
Cdd:COG1196   338 ELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLE 417

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 299 EGSAALTSRLAAYESEREALRIARLELARVRKERNVVAEESAAATQEAADSEELAKALRKEIETLKTEAPALEARRAhat 378
Cdd:COG1196   418 RLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLL--- 494

                         250       260       270
                  ....*....|....*....|....*....|...
gi 2002384799 379 sALEEALAAVELFENGATASSPRPPLPPSHATG 411
Cdd:COG1196   495 -LLLEAEADYEGFLEGVKAALLLAGLRGLAGAV 526
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 175-390 3.36e-11

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 65.46  E-value: 3.36e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799  175 EAELAELRPAIAIFTDEQADLLARKEGLEGQLTDATSEHRSRCAALEEARSRVAELSAELQSTSAALAASDAELAKLARE 254
Cdd:TIGR02168  676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKE 755

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799  255 KGETAAALEPLPERLELARSKAAEAAESLAALQERREAMSSELEEGSAALTSRLAAYESEREALRIARLELARVRKERNV 334
Cdd:TIGR02168  756 LTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAA 835

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 2002384799  335 VAEESAAATQEAADSEELAKALRKEIETLKTEAPALEARRAHATSALEEALAAVEL 390
Cdd:TIGR02168  836 TERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALAL 891
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 163-389 7.85e-10

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 61.11  E-value: 7.85e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 163 EIASLRDSAETLEAELAELRPAIAIFTDEQADL-------LARKEGLEGQLTDATSEHRSRCAALEEARSRVAELSAELQ 235
Cdd:COG1196   247 ELEELEAELEELEAELAELEAELEELRLELEELeleleeaQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELA 326

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 236 STSAALAASDAELAKLAREKGETAAALEPLPERLELARSKAAEAAESLAALQERREAMSSELEEGSAALTSRLAAYESER 315
Cdd:COG1196   327 ELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELE 406

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2002384799 316 EALRIARLELARVRKERNVVAEESAAATQEAADSEELAKALRKEIETLKTEAPALEARRAHATSALEEALAAVE 389
Cdd:COG1196   407 EAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALA 480
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 139-393 1.05e-09

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 60.46  E-value: 1.05e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799  139 LREECAALERAKESSERTLVSLPGEIASLRDSAETLEAELAELRPAIAIFTDEQADLLARKEGLEGQLtdatSEHRSRCA 218
Cdd:TIGR02168  237 LREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQK----QILRERLA 312

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799  219 ALEEARSRVAELSAELQSTSAALAAsdaELAKLAREKGETAAALEPLPERLELARSKAAEAAESLAALQERREAMSS--- 295
Cdd:TIGR02168  313 NLERQLEELEAQLEELESKLDELAE---ELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSkva 389

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799  296 ELEEGSAALTSRLAAYESerealRIARLELARVRKERNVVAEESAAATQEAADSEELAKALRKEIETLKTEAPALEARRA 375
Cdd:TIGR02168  390 QLELQIASLNNEIERLEA-----RLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALE 464

                          250
                   ....*....|....*...
gi 2002384799  376 HATSALEEALAAVELFEN 393
Cdd:TIGR02168  465 ELREELEEAEQALDAAER 482
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 108-382 5.76e-09

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 58.14  E-value: 5.76e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799  108 ALEHLDRrDALAVSLATAKEAVAAAEAEAGPLREECAALERAKESSERTLVSLPGEIASLRDSAETLEAELAELRPAIAI 187
Cdd:TIGR02168  221 ELRELEL-ALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISR 299

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799  188 FTDEQADLLARKEGLEGQLTDATSEHRSRCAALEEARSRVAELSAELQSTSAALAASDAELAKLAREKGETAAALEPLPE 267
Cdd:TIGR02168  300 LEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEE 379

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799  268 RLELARSKAAEAAESLAALQERREAMSSELEegsaALTSRLAAYESEREAL--RIARLELARVRKERNVVAEESAAATQE 345
Cdd:TIGR02168  380 QLETLRSKVAQLELQIASLNNEIERLEARLE----RLEDRRERLQQEIEELlkKLEEAELKELQAELEELEEELEELQEE 455

                          250       260       270
                   ....*....|....*....|....*....|....*..
gi 2002384799  346 AADSEELAKALRKEIETLKTEAPALEARRAHATSALE 382
Cdd:TIGR02168  456 LERLEEALEELREELEEAEQALDAAERELAQLQARLD 492
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 49-366 7.89e-09

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 57.76  E-value: 7.89e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799   49 RKARQEFAAAVSEVQALTKPSTPLETQQRQL---IDLLIAQVSANDKGFADEVADLDKRGRMALEHLDRRDALAVSLATA 125
Cdd:TIGR02168  680 EELEEKIEELEEKIAELEKALAELRKELEELeeeLEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTEL 759

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799  126 KEAVAAAEAEAGPLREECAALERAKESSERTLVSLPGEIASLRDSAETLEAELAELRpaiaiftDEQADLLARKEGLEGQ 205
Cdd:TIGR02168  760 EAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLN-------EEAANLRERLESLERR 832

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799  206 LTDATSEHRSRCAALEEARSRVAELSAELQSTSAALAASDAELAKLAREKGETAAALEPLPERLELARSKAAEAAESLaa 285
Cdd:TIGR02168  833 IAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKR-- 910

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799  286 lqerreamsSELEEGSAALTSRLAAYESEREALRIARLEL-ARVRKERNVVAEESAAATQEAADSEELAKALRKEIETLK 364
Cdd:TIGR02168  911 ---------SELRRELEELREKLAQLELRLEGLEVRIDNLqERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKI 981


                   ..
gi 2002384799  365 TE 366
Cdd:TIGR02168  982 KE 983
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 163-387 1.21e-08

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 57.37  E-value: 1.21e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799  163 EIASLRDSAETLEAELAELRPAIAIFTDEQADLLARKEGLEGQLTDATSEHRSRCAALEEARSRVAELSAELQSTSAALA 242
Cdd:TIGR02168  226 ELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQ 305

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799  243 ASDAELAKLAREKGETAAALEPLPERLELARSKAAEAAESLAALQERREAMSSELEEGSAALTSRLAAYESEREALRIAR 322
Cdd:TIGR02168  306 ILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLR 385

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2002384799  323 LELARVRKERNVVAEESAAATQEAADSEELAKALRKEIETLKTEAPALEARRAHATSALEEALAA 387
Cdd:TIGR02168  386 SKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELE 450
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 75-390 1.74e-08

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 56.48  E-value: 1.74e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799  75 QQRQLIDLLIAQVSANDKGFADEVADLDKRGRMALEHLDRRDALAVSLATAKEAVAAAEAEAGPLREECAALERAKESSE 154
Cdd:COG1196   278 ELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAE 357

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 155 RTLVSLPGEIASLRDSAETLEAELAELRPAIAIFTDEQADLLARKEGLEGQLTDATSEHRSRCAALEEARSRVAELSAEL 234
Cdd:COG1196   358 AELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEE 437

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 235 QSTSAALAASDAELAKLAREKGETAAALEPLPERLELARSKAAEAAESLAALQERREAMSSELEEGSAALTSRLAAYESE 314
Cdd:COG1196   438 EEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLA 517

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2002384799 315 REALRIARLELARVRKERNVVAEESAAATQEAADSEELAKALRKEIETLKTEAPALEARRAHATSALEEALAAVEL 390
Cdd:COG1196   518 GLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALA 593
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
139-393 8.38e-08

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 54.28  E-value: 8.38e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 139 LREECAALERAKESSERTLVSLPGEIASLRDSAETLEAELAELR-------PAIAIFTDEQADLLARKEGLEGQLTD--- 208
Cdd:PRK02224  256 LEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLaeaglddADAEAVEARREELEDRDEELRDRLEEcrv 335

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 209 ATSEHRSRCAALEEARSRVAELSAELQSTSAALaasDAELAKLAREKGETAAALEPLPERLELARSKAAEAAESLAALQE 288
Cdd:PRK02224  336 AAQAHNEEAESLREDADDLEERAEELREEAAEL---ESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAED 412

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 289 RREAMSSELEEGSAALTSRLAAYESEREALRIARLELARVRKERNVVAEESAAATQEAADSEELAKALRKEIETLKTEAP 368
Cdd:PRK02224  413 FLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVE 492

                         250       260
                  ....*....|....*....|....*
gi 2002384799 369 ALEARRAHATSALEEALAAVELFEN 393
Cdd:PRK02224  493 EVEERLERAEDLVEAEDRIERLEER 517
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
113-392 2.00e-06

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 50.04  E-value: 2.00e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 113 DRRDALAVSLATAKEAVAAAEAEAGPLREECAALE-RAKESSErtlvslpgEIASLRDSAETLEAELAELRPAIAIFTDE 191
Cdd:PRK02224  321 DRDEELRDRLEECRVAAQAHNEEAESLREDADDLEeRAEELRE--------EAAELESELEEAREAVEDRREEIEELEEE 392

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 192 QADLLARKEGLEGQLTDATSEHRSRCAALEEARSRVAELSAELQSTSAALAASDAELAKLAREKGETAAALEPLPERLEL 271
Cdd:PRK02224  393 IEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEE 472

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 272 ARSKAAEAAESLAALQERREAMSSELEEGSAaltsrLAAYESEREALRIARLELARVRKERnvvaEESAAATQEAADSee 351
Cdd:PRK02224  473 DRERVEELEAELEDLEEEVEEVEERLERAED-----LVEAEDRIERLEERREDLEELIAER----RETIEEKRERAEE-- 541

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 2002384799 352 lakaLRKEIETLKTEAPALEARRAHATSALEEALAAVELFE 392
Cdd:PRK02224  542 ----LRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELN 578
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 160-397 2.23e-06

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 49.38  E-value: 2.23e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 160 LPGEIASLRDSAETLEAELAELRPAIAIFTDEQADLLARKEGLEGQLTDATSEHRSRCAALEEARSRVAELSAELQSTSA 239
Cdd:COG4942    11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 240 ALAASDAELAKLAREKGETAAALEPLPERLELARSKAAEAAESLAALQERREAMSSELEEGSAALTSRLAAYESEREALR 319
Cdd:COG4942    91 EIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE 170

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2002384799 320 IARLELARVRKERnvvAEESAAATQEAADSEELAKALRKEIETLKTEAPALEARRAHATSALEEALAAVELFENGATA 397
Cdd:COG4942   171 AERAELEALLAEL---EEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 206-392 2.63e-05

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 46.47  E-value: 2.63e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 206 LTDATSEHRSRCAALEEARsRVAELSAELQstsAALAASDAELAKLAREKGEtaaaleplpERLELARSKAAEAAESLAA 285
Cdd:COG1196   191 LEDILGELERQLEPLERQA-EKAERYRELK---EELKELEAELLLLKLRELE---------AELEELEAELEELEAELEE 257

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 286 LQERREAMSSELEEGSAALTSRLAAYESEREALRIARLELARVRKERNVVAEESAAATQEAADSEELAKALRKEIETLKT 365
Cdd:COG1196   258 LEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEE 337

                         170       180
                  ....*....|....*....|....*..
gi 2002384799 366 EAPALEARRAHATSALEEALAAVELFE 392
Cdd:COG1196   338 ELEELEEELEEAEEELEEAEAELAEAE 364
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
163-386 3.18e-05

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 46.19  E-value: 3.18e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 163 EIASLRDSAETLEAELAELRPAIAIFTDEQADLLARKEGLEGQLTdatsEHRSRCAALEEARSRVAELSAELQSTSAALA 242
Cdd:PRK02224  200 EEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLE----EHEERREELETLEAEIEDLRETIAETERERE 275

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 243 ASDAELAKLAREKGETAAALEPLPERLELARSKAAEAAESLAALQERREAMSSELEEGSAALTSRLAAYESEREALRIAR 322
Cdd:PRK02224  276 ELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLE 355

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2002384799 323 LELARVRKERNVVAEESAAATQEAADSEELAKALRKEIETLKTEAPALEARRAHATSALEEALA 386
Cdd:PRK02224  356 ERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELRE 419
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 139-353 3.76e-05

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 46.20  E-value: 3.76e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799  139 LREECAALERAKESSERTLVSLPGEIASLRDSAETLEAELAELRPAIAIFTDEQADLLARKEGLEGQLTDATSEHRSRCA 218
Cdd:TIGR02168  300 LEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEE 379

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799  219 ALEEARSRVAELSAELQSTSAALAASDAELAKLAREKGETAAALEPLPERLELARSKA-----AEAAESLAALQERREAM 293
Cdd:TIGR02168  380 QLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKElqaelEELEEELEELQEELERL 459

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799  294 SSELEEGSAALTSRLAAYESEREALRIARLELARVRKERNVVAEESAAATQEAADSEELA 353
Cdd:TIGR02168  460 EEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLS 519
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 72-366 4.24e-05

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 45.70  E-value: 4.24e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799  72 LETQQRQLIDLLIAQVSANDKGFADEVADLDKRGRMALEHLDRRDALAVSLATAKEAVAAAEAEAGPLREECAALERAKE 151
Cdd:COG1196   484 EELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAI 563

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 152 SSERTLVSLPGEIASLRDSAETLEAELAELRPAIAIFTDEQADLLARKEGLEGQLTDATSEHRSRCAALEEARSRVAELS 231
Cdd:COG1196   564 EYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLA 643

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 232 AELQSTSAALAASDAELAKLAREKGETAAALEplpERLELARSKAAEAAESLAALQERREAMSSELEEGSAALTSRLAAY 311
Cdd:COG1196   644 GRLREVTLEGEGGSAGGSLTGGSRRELLAALL---EAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEE 720

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2002384799 312 ESEREALRIARLELARVRKERNVVAEESAAATQEAADSEELAKALRKEIETLKTE 366
Cdd:COG1196   721 LEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLERE 775
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 139-384 4.32e-05

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 45.83  E-value: 4.32e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799  139 LREECAALERAKESSERTLVSLPGEIASLRDSAETLEAELAELRpaiaiftDEQADLLARKEGLEGQLTDATSEHRSRCA 218
Cdd:TIGR02169  679 LRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIE-------KEIEQLEQEEEKLKERLEELEEDLSSLEQ 751

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799  219 ALEEARSRVAELSAELQSTSAALAASDAELAKL-AREKGETAAALEPLPERLELARSKAAEAAESLAALQERREAMSSEL 297
Cdd:TIGR02169  752 EIENVKSELKELEARIEELEEDLHKLEEALNDLeARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYL 831

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799  298 EEGSAALTSRLAAYESEREALRiARLELARVRKERnvVAEESAAATQEAADSEELAKALRKEIETLKTEAPALEARRAHA 377
Cdd:TIGR02169  832 EKEIQELQEQRIDLKEQIKSIE-KEIENLNGKKEE--LEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEEL 908


                   ....*..
gi 2002384799  378 TSALEEA 384
Cdd:TIGR02169  909 EAQIEKK 915
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 212-393 7.91e-05

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 44.93  E-value: 7.91e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 212 EHRSRCAALEEARSRVAELSAELQSTSAALAASDAELAKLAREKGETAAALEplpeRLELARSKAAEAAESLAALQERRE 291
Cdd:COG1196   226 EAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELE----ELELELEEAQAEEYELLAELARLE 301

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 292 AMSSELEEGSAALTSRLAAYESEREALRIARLELARVRKERnvvAEESAAATQEAADSEELAKALRKEIETLKTEAPALE 371
Cdd:COG1196   302 QDIARLEERRRELEERLEELEEELAELEEELEELEEELEEL---EEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE 378

                         170       180
                  ....*....|....*....|..
gi 2002384799 372 ARRAHATSALEEALAAVELFEN 393
Cdd:COG1196   379 EELEELAEELLEALRAAAELAA 400
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
 163-319 1.60e-04

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 42.99  E-value: 1.60e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 163 EIASLRDSAETLEAELAELRpaiaiftDEQADLLARKEGLEGQLTDATSEHRSRCAALEEARSRVAELSAELQSTSAA-- 240
Cdd:COG1579    18 ELDRLEHRLKELPAELAELE-------DELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNke 90

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2002384799 241 LAASDAELAKLAREKGETAAALEPLPERLELARSKAAEAAESLAALQERREAMSSELEEGSAALTSRLAAYESEREALR 319
Cdd:COG1579    91 YEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELA 169
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
155-385 2.65e-04

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 43.37  E-value: 2.65e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799  155 RTLVSLPGEIASLRDSAETLEAELAELRPAIAIFtDEQADLLARKEGLEGQLTDATSEHRSRcaALEEARSRVAELSAEL 234
Cdd:COG4913    228 DALVEHFDDLERAHEALEDAREQIELLEPIRELA-ERYAAARERLAELEYLRAALRLWFAQR--RLELLEAELEELRAEL 304

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799  235 QSTSAALAASDAELAKLAREKGETAAALEPLP-ERLELARSKAAEAAESLAALQERREAMSSELEEGSAALTSRLAAYES 313
Cdd:COG4913    305 ARLEAELERLEARLDALREELDELEAQIRGNGgDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAA 384

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2002384799  314 EREAlriARLELARVRKERNVVAEESAAATQEAADSEELAKALRKEIETLKTEAPALEARRAHATSALEEAL 385
Cdd:COG4913    385 LRAE---AAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAEAL 453
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 190-383 3.47e-04

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 43.13  E-value: 3.47e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799  190 DEQADLLARKEGLEGQLTDATSEHRSRCAALEEARSRVAELSAELQSTSAALAASDAELAKLAREKGETAAALEPLPERL 269
Cdd:TIGR02169  674 AELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEI 753

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799  270 ELARSKAAEAAESLAALQERREAMSSELEEGSA-----------ALTSRLAAYESEREA-LRIARLELARVRKERNVVAE 337
Cdd:TIGR02169  754 ENVKSELKELEARIEELEEDLHKLEEALNDLEArlshsripeiqAELSKLEEEVSRIEArLREIEQKLNRLTLEKEYLEK 833

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*.
gi 2002384799  338 ESAAATQEAADSEELAKALRKEIETLKTEAPALEARRAHATSALEE 383
Cdd:TIGR02169  834 EIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRD 879
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
223-387 4.81e-04

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 42.59  E-value: 4.81e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799  223 ARSRVAELSAELQSTSAALAASDAELAKLAREkgetaaaLEPLPERLELARskaaeaaeslaalqerREAMSSELEEGSA 302
Cdd:COG4913    608 NRAKLAALEAELAELEEELAEAEERLEALEAE-------LDALQERREALQ----------------RLAEYSWDEIDVA 664

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799  303 ALTSRLAAYESEREALRIARLELARVRKERNVVAEESAAATQEAADSEELAKALRKEIETLKTEAPALEARRAHATSALE 382
Cdd:COG4913    665 SAEREIAELEAELERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLAR 744


                   ....*
gi 2002384799  383 EALAA 387
Cdd:COG4913    745 LELRA 749
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 48-383 5.31e-04

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 42.23  E-value: 5.31e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799  48 ARKARQEFAAAVSEVQALTKPSTPLETQQRQLIDLLIAQVSANDKGFADEVADLDKRGRMALEHLDRRDALAVSLATAKE 127
Cdd:COG1196   430 LAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEG 509

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 128 AVAAAEAEAGPLREECAALERAKESSERTLV------SLPGEIASLRDSAETLEAELAELRPAIAIF---TDEQADLLAR 198
Cdd:COG1196   510 VKAALLLAGLRGLAGAVAVLIGVEAAYEAALeaalaaALQNIVVEDDEVAAAAIEYLKAAKAGRATFlplDKIRARAALA 589

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 199 KEGLEGQLTDATSEHRSRCAALEEARSRVAELSAELQSTSAALAASDAELAKLAREKGETAAALEPLPERLELARSKAAE 278
Cdd:COG1196   590 AALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRE 669

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 279 AAESLAALQERREAMSSELEEGSAALTSRLAAYESEREALRIARL----ELARVRKERNVVAEESAAATQEAADSEELAK 354
Cdd:COG1196   670 LLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEerleEELEEEALEEQLEAEREELLEELLEEEELLE 749

                         330       340
                  ....*....|....*....|....*....
gi 2002384799 355 ALRKEIETLKTEAPALEARRAHATSALEE 383
Cdd:COG1196   750 EEALEELPEPPDLEELERELERLEREIEA 778
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
235-396 5.87e-04

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 42.21  E-value: 5.87e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799  235 QSTSAALAASDAELAKLAREKGETAAALEPLPERLELARSKAAEAAESLAALQERREAMSseLEEGSAALTSRLAAYESE 314
Cdd:COG4913    606 FDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVAS--AEREIAELEAELERLDAS 683

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799  315 REALRIARLELARVRKERNVVAEESAAATQEAADSEELAKALRKEIETLKTEAPALEAR-RAHATSALEEALAAVELFEN 393
Cdd:COG4913    684 SDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLaRLELRALLEERFAAALGDAV 763


                   ...
gi 2002384799  394 GAT 396
Cdd:COG4913    764 ERE 766
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 139-347 6.13e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 41.67  E-value: 6.13e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 139 LREECAALERAKESSERTLVSLPGEIASLRDSAETLEAELAELRPAIAIFTDEQADLLARKEGLEGQLTD--ATSEHRSR 216
Cdd:COG4942    39 LEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAEllRALYRLGR 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 217 CAALEEARSrvAELSAELQSTSAALAASDAELAKLAREKGETAAALEPLPERLELARSKAAEAAESLAALQERREAMSSE 296
Cdd:COG4942   119 QPPLALLLS--PEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAE 196

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2002384799 297 LEEGSAALTSRLAAYESEREALRIARLELARVRKERNVVAEESAAATQEAA 347
Cdd:COG4942   197 RQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAG 247
PRK05431 PRK05431
seryl-tRNA synthetase; Provisional
 300-388 7.10e-04

seryl-tRNA synthetase; Provisional


Pssm-ID: 235461 [Multi-domain]  Cd Length: 425  Bit Score: 41.59  E-value: 7.10e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 300 GSAALTSRLAAYESEREALrIARLELARvrKERNVVAEESAaatqEAADSEELAKALRKEIETLKTEAPALEARRAHATS 379
Cdd:PRK05431   22 GFPLDVDELLELDEERREL-QTELEELQ--AERNALSKEIG----QAKRKGEDAEALIAEVKELKEEIKALEAELDELEA 94


                  ....*....
gi 2002384799 380 ALEEALAAV 388
Cdd:PRK05431   95 ELEELLLRI 103
PRK09039 PRK09039
peptidoglycan -binding protein;
167-262 1.38e-03

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 40.33  E-value: 1.38e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 167 LRDSAETLEAELAELRPAIAiftdEQADLLARKEGLEGQLTDATSEHRSRCAALEEARSRVAELSAELQSTSAALAASDA 246
Cdd:PRK09039   44 LSREISGKDSALDRLNSQIA----ELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAG 119

                          90
                  ....*....|....*..
gi 2002384799 247 ELAK-LAREKGETAAAL 262
Cdd:PRK09039  120 ELAQeLDSEKQVSARAL 136
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
139-384 1.68e-03

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 40.79  E-value: 1.68e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 139 LREECAALERAKESSERTLvslpGEIASLRDSAETLEAELAELRPAIaiftdeqADLLARKEGLEGQLTDATSEHRSRCA 218
Cdd:PRK02224  218 LDEEIERYEEQREQARETR----DEADEVLEEHEERREELETLEAEI-------EDLRETIAETEREREELAEEVRDLRE 286

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 219 ALEEARSRVAELSAELQSTSAALAASDAELAKLAREKGETAAALEPLPERLELARSKAAEAAESLAALQERREamssELE 298
Cdd:PRK02224  287 RLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAE----ELR 362

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 299 EGSAALTSRLaayESEREALRIARLELARVRKERNVVAEESAAATQEAADSEELAKALRKEIETLKTEAPALEARRAHAT 378
Cdd:PRK02224  363 EEAAELESEL---EEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTAR 439


                  ....*.
gi 2002384799 379 SALEEA 384
Cdd:PRK02224  440 ERVEEA 445
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 48-389 2.34e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 40.31  E-value: 2.34e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799  48 ARKARQEFAAAVSEVQALTKPSTPLETQQRQLIDLLIAQVSANDKGFADEVADLDKRGRMALEHLDRRDALAVSLATAKE 127
Cdd:COG1196   328 LEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEE 407

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 128 AVAAAEAEAGPLREECAALERAKESSERTLVSLPGEIASLRDSAETLEAELAELRPAIAIFTDEQADLLARKEGLEGQLT 207
Cdd:COG1196   408 AEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELA 487

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 208 DATSEHRSRCAALEEARSR----------------------------------VAELSAELQSTSAALAASDAELAKLAR 253
Cdd:COG1196   488 EAAARLLLLLEAEADYEGFlegvkaalllaglrglagavavligveaayeaalEAALAAALQNIVVEDDEVAAAAIEYLK 567

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 254 EKGETAAALEPLPERLELARSKAAEAAESLAALQERREAMSSELEEGSAALTSRLAAYESEREALRIARLELARVRKERN 333
Cdd:COG1196   568 AAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLR 647

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2002384799 334 VVAEESAAATQEAADSEELAKALRKEIETLKTEAPALEARRAHATSALEEALAAVE 389
Cdd:COG1196   648 EVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEE 703
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 114-319 3.12e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 39.36  E-value: 3.12e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 114 RRDALAVSLATAKEAVAAAEAEAGPLREECAALERAKESSERTLVSLPGEIASLRDSAETLEAELAELRPAIAIFTDEQA 193
Cdd:COG4942    28 ELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELA 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 194 DLLAR--KEGLEGQLT-----DATSEHRSRCAALEEARSRVAELSAELQSTSAALAASDAELAKLAREKGETAAALEPLP 266
Cdd:COG4942   108 ELLRAlyRLGRQPPLAlllspEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEER 187

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2002384799 267 ERLELARSKAAEAAESLAALQERREAMSSELEEGSAALTSRLAAYESEREALR 319
Cdd:COG4942   188 AALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
146-344 5.44e-03

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 38.84  E-value: 5.44e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 146 LERAKESSERTLVSLPGEIASLRDSAETLEAELAELRPA--IAIFTDEQADLLARKEGLEGQLTDATSEHRSRCAALEEA 223
Cdd:COG3206   166 LELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKngLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAAL 245

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 224 RSRVAELSAELQ--STSAALAASDAELAKLAREKGETAAALEPL-PERLELARSKAAEAAESLAALQERREAMSSELEeg 300
Cdd:COG3206   246 RAQLGSGPDALPelLQSPVIQQLRAQLAELEAELAELSARYTPNhPDVIALRAQIAALRAQLQQEAQRILASLEAELE-- 323

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 2002384799 301 saALTSRLAAYESEREALRIARLELARVRKERNVVAEESAAATQ 344
Cdd:COG3206   324 --ALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARE 365
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 95-318 7.08e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 38.76  E-value: 7.08e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799  95 ADEVADLDKRGRMALEHLDRRDA-------LAVSLATAKEAVAAAEAEAGPLREECAALERAKESSERTLVSLPGEIASL 167
Cdd:COG1196   549 QNIVVEDDEVAAAAIEYLKAAKAgratflpLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLV 628

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 168 RDSAETLEAELAELRPAIAIFTDEQADLLARKEGLEGQLTDATSEHRSRCAALEEARSRVAELSAELQSTSAALAASDAE 247
Cdd:COG1196   629 AARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERE 708

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2002384799 248 LAKLAREKGETAAALEPLPERLELARSKAAEAAESLAALQERREAMSSELEEGSAALTSRLAAYESEREAL 318
Cdd:COG1196   709 LAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
PTZ00121 PTZ00121
MAEBL; Provisional
 141-389 9.30e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 38.58  E-value: 9.30e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799  141 EECAALERAKESSERTLVSLPGEIASLRDSAETLEAELAELRPAIaiftdEQADLLARKEGLEGQLTDATSEHRSRCAAL 220
Cdd:PTZ00121  1287 EEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKA-----DAAKKKAEEAKKAAEAAKAEAEAAADEAEA 1361

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799  221 EEARSRVAELSAELQSTSAALAASDAELAKLAREKGETAAALEPLPERLELARSKAAEAAESLAALQERREAmsselEEG 300
Cdd:PTZ00121  1362 AEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKA-----DEA 1436

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799  301 SAALTSRLAAYESEREALRIARLELARVRKERNVVAEESAAATQEAADSEEL---AKALRKEIETLKTEA----PALEAR 373
Cdd:PTZ00121  1437 KKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAkkkAEEAKKKADEAKKAAeakkKADEAK 1516

                          250
                   ....*....|....*.
gi 2002384799  374 RAHATSALEEALAAVE 389
Cdd:PTZ00121  1517 KAEEAKKADEAKKAEE 1532
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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