|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
139-394 |
1.48e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 66.24 E-value: 1.48e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 139 LREECAALERA-KESSERTLVSLPGEIASLRDSAETLEAELAELRPAIAIFTDEQADLLARKEGLEGQLTDATSEHRSRC 217
Cdd:TIGR02169 263 LEKRLEEIEQLlEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELE 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 218 AALEEARSRVAELSAELQSTSAALAASDAELAKLAREKGETAAALEPLPERLELARSKAAEAAESLAALQERREAMSSEL 297
Cdd:TIGR02169 343 REIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEEL 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 298 EEGSAALTSRLAAYESEREALRIARLELARVRKERNVVAEESAAATQEAADSEELAKALRKEIETLKTEAPALEARRAHA 377
Cdd:TIGR02169 423 ADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARAS 502
|
250
....*....|....*..
gi 2002384799 378 TSALEEALAAVELFENG 394
Cdd:TIGR02169 503 EERVRGGRAVEEVLKAS 519
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
139-390 |
2.18e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 65.73 E-value: 2.18e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 139 LREECAALERAKESSERTLVSLPGEIASLRDSAETLEAELAELRPAIAIFTDEQADLLARKEGLEGQLTDATSEHRSRCA 218
Cdd:COG1196 251 LEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEE 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 219 ALEEARSRVAELSAELQSTSAALAASDAELAKLAREKGETAAALEPLPERLELARSKAAEAAESLAALQERREamssELE 298
Cdd:COG1196 331 ELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLE----ELE 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 299 EGSAALTSRLAAYESEREALRIARLELARVRKERnvvAEESAAATQEAADSEELAKALRKEIETLKTEAPALEARRAHAT 378
Cdd:COG1196 407 EAEEALLERLERLEEELEELEEALAELEEEEEEE---EEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELL 483
|
250
....*....|..
gi 2002384799 379 SALEEALAAVEL 390
Cdd:COG1196 484 EELAEAAARLLL 495
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
139-411 |
2.46e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 65.73 E-value: 2.46e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 139 LREECAALERAKESSERTLVSLPGEIASLRDSAETLEAELAELRPAIAIFTDEQADLLARKEGLEGQLTDATSEHRSRCA 218
Cdd:COG1196 258 LEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEE 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 219 ALEEARSRVAELSAELQSTSAALAASDAELAKLAREKGETAAALEPLPERLELARSKAAEAAESLAALQERREAMSSELE 298
Cdd:COG1196 338 ELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLE 417
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 299 EGSAALTSRLAAYESEREALRIARLELARVRKERNVVAEESAAATQEAADSEELAKALRKEIETLKTEAPALEARRAhat 378
Cdd:COG1196 418 RLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLL--- 494
|
250 260 270
....*....|....*....|....*....|...
gi 2002384799 379 sALEEALAAVELFENGATASSPRPPLPPSHATG 411
Cdd:COG1196 495 -LLLEAEADYEGFLEGVKAALLLAGLRGLAGAV 526
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
175-390 |
3.36e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.46 E-value: 3.36e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 175 EAELAELRPAIAIFTDEQADLLARKEGLEGQLTDATSEHRSRCAALEEARSRVAELSAELQSTSAALAASDAELAKLARE 254
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKE 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 255 KGETAAALEPLPERLELARSKAAEAAESLAALQERREAMSSELEEGSAALTSRLAAYESEREALRIARLELARVRKERNV 334
Cdd:TIGR02168 756 LTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAA 835
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2002384799 335 VAEESAAATQEAADSEELAKALRKEIETLKTEAPALEARRAHATSALEEALAAVEL 390
Cdd:TIGR02168 836 TERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALAL 891
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
163-389 |
7.85e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.11 E-value: 7.85e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 163 EIASLRDSAETLEAELAELRPAIAIFTDEQADL-------LARKEGLEGQLTDATSEHRSRCAALEEARSRVAELSAELQ 235
Cdd:COG1196 247 ELEELEAELEELEAELAELEAELEELRLELEELeleleeaQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELA 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 236 STSAALAASDAELAKLAREKGETAAALEPLPERLELARSKAAEAAESLAALQERREAMSSELEEGSAALTSRLAAYESER 315
Cdd:COG1196 327 ELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELE 406
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2002384799 316 EALRIARLELARVRKERNVVAEESAAATQEAADSEELAKALRKEIETLKTEAPALEARRAHATSALEEALAAVE 389
Cdd:COG1196 407 EAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALA 480
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
139-393 |
1.05e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.46 E-value: 1.05e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 139 LREECAALERAKESSERTLVSLPGEIASLRDSAETLEAELAELRPAIAIFTDEQADLLARKEGLEGQLtdatSEHRSRCA 218
Cdd:TIGR02168 237 LREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQK----QILRERLA 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 219 ALEEARSRVAELSAELQSTSAALAAsdaELAKLAREKGETAAALEPLPERLELARSKAAEAAESLAALQERREAMSS--- 295
Cdd:TIGR02168 313 NLERQLEELEAQLEELESKLDELAE---ELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSkva 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 296 ELEEGSAALTSRLAAYESerealRIARLELARVRKERNVVAEESAAATQEAADSEELAKALRKEIETLKTEAPALEARRA 375
Cdd:TIGR02168 390 QLELQIASLNNEIERLEA-----RLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALE 464
|
250
....*....|....*...
gi 2002384799 376 HATSALEEALAAVELFEN 393
Cdd:TIGR02168 465 ELREELEEAEQALDAAER 482
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
108-382 |
5.76e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.14 E-value: 5.76e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 108 ALEHLDRrDALAVSLATAKEAVAAAEAEAGPLREECAALERAKESSERTLVSLPGEIASLRDSAETLEAELAELRPAIAI 187
Cdd:TIGR02168 221 ELRELEL-ALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISR 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 188 FTDEQADLLARKEGLEGQLTDATSEHRSRCAALEEARSRVAELSAELQSTSAALAASDAELAKLAREKGETAAALEPLPE 267
Cdd:TIGR02168 300 LEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEE 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 268 RLELARSKAAEAAESLAALQERREAMSSELEegsaALTSRLAAYESEREAL--RIARLELARVRKERNVVAEESAAATQE 345
Cdd:TIGR02168 380 QLETLRSKVAQLELQIASLNNEIERLEARLE----RLEDRRERLQQEIEELlkKLEEAELKELQAELEELEEELEELQEE 455
|
250 260 270
....*....|....*....|....*....|....*..
gi 2002384799 346 AADSEELAKALRKEIETLKTEAPALEARRAHATSALE 382
Cdd:TIGR02168 456 LERLEEALEELREELEEAEQALDAAERELAQLQARLD 492
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
49-366 |
7.89e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.76 E-value: 7.89e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 49 RKARQEFAAAVSEVQALTKPSTPLETQQRQL---IDLLIAQVSANDKGFADEVADLDKRGRMALEHLDRRDALAVSLATA 125
Cdd:TIGR02168 680 EELEEKIEELEEKIAELEKALAELRKELEELeeeLEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTEL 759
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 126 KEAVAAAEAEAGPLREECAALERAKESSERTLVSLPGEIASLRDSAETLEAELAELRpaiaiftDEQADLLARKEGLEGQ 205
Cdd:TIGR02168 760 EAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLN-------EEAANLRERLESLERR 832
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 206 LTDATSEHRSRCAALEEARSRVAELSAELQSTSAALAASDAELAKLAREKGETAAALEPLPERLELARSKAAEAAESLaa 285
Cdd:TIGR02168 833 IAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKR-- 910
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 286 lqerreamsSELEEGSAALTSRLAAYESEREALRIARLEL-ARVRKERNVVAEESAAATQEAADSEELAKALRKEIETLK 364
Cdd:TIGR02168 911 ---------SELRRELEELREKLAQLELRLEGLEVRIDNLqERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKI 981
|
..
gi 2002384799 365 TE 366
Cdd:TIGR02168 982 KE 983
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
163-387 |
1.21e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.37 E-value: 1.21e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 163 EIASLRDSAETLEAELAELRPAIAIFTDEQADLLARKEGLEGQLTDATSEHRSRCAALEEARSRVAELSAELQSTSAALA 242
Cdd:TIGR02168 226 ELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQ 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 243 ASDAELAKLAREKGETAAALEPLPERLELARSKAAEAAESLAALQERREAMSSELEEGSAALTSRLAAYESEREALRIAR 322
Cdd:TIGR02168 306 ILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLR 385
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2002384799 323 LELARVRKERNVVAEESAAATQEAADSEELAKALRKEIETLKTEAPALEARRAHATSALEEALAA 387
Cdd:TIGR02168 386 SKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELE 450
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
75-390 |
1.74e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.48 E-value: 1.74e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 75 QQRQLIDLLIAQVSANDKGFADEVADLDKRGRMALEHLDRRDALAVSLATAKEAVAAAEAEAGPLREECAALERAKESSE 154
Cdd:COG1196 278 ELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAE 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 155 RTLVSLPGEIASLRDSAETLEAELAELRPAIAIFTDEQADLLARKEGLEGQLTDATSEHRSRCAALEEARSRVAELSAEL 234
Cdd:COG1196 358 AELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEE 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 235 QSTSAALAASDAELAKLAREKGETAAALEPLPERLELARSKAAEAAESLAALQERREAMSSELEEGSAALTSRLAAYESE 314
Cdd:COG1196 438 EEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLA 517
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2002384799 315 REALRIARLELARVRKERNVVAEESAAATQEAADSEELAKALRKEIETLKTEAPALEARRAHATSALEEALAAVEL 390
Cdd:COG1196 518 GLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALA 593
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
139-393 |
8.38e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 54.28 E-value: 8.38e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 139 LREECAALERAKESSERTLVSLPGEIASLRDSAETLEAELAELR-------PAIAIFTDEQADLLARKEGLEGQLTD--- 208
Cdd:PRK02224 256 LEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLaeaglddADAEAVEARREELEDRDEELRDRLEEcrv 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 209 ATSEHRSRCAALEEARSRVAELSAELQSTSAALaasDAELAKLAREKGETAAALEPLPERLELARSKAAEAAESLAALQE 288
Cdd:PRK02224 336 AAQAHNEEAESLREDADDLEERAEELREEAAEL---ESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAED 412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 289 RREAMSSELEEGSAALTSRLAAYESEREALRIARLELARVRKERNVVAEESAAATQEAADSEELAKALRKEIETLKTEAP 368
Cdd:PRK02224 413 FLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVE 492
|
250 260
....*....|....*....|....*
gi 2002384799 369 ALEARRAHATSALEEALAAVELFEN 393
Cdd:PRK02224 493 EVEERLERAEDLVEAEDRIERLEER 517
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
113-392 |
2.00e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.04 E-value: 2.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 113 DRRDALAVSLATAKEAVAAAEAEAGPLREECAALE-RAKESSErtlvslpgEIASLRDSAETLEAELAELRPAIAIFTDE 191
Cdd:PRK02224 321 DRDEELRDRLEECRVAAQAHNEEAESLREDADDLEeRAEELRE--------EAAELESELEEAREAVEDRREEIEELEEE 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 192 QADLLARKEGLEGQLTDATSEHRSRCAALEEARSRVAELSAELQSTSAALAASDAELAKLAREKGETAAALEPLPERLEL 271
Cdd:PRK02224 393 IEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEE 472
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 272 ARSKAAEAAESLAALQERREAMSSELEEGSAaltsrLAAYESEREALRIARLELARVRKERnvvaEESAAATQEAADSee 351
Cdd:PRK02224 473 DRERVEELEAELEDLEEEVEEVEERLERAED-----LVEAEDRIERLEERREDLEELIAER----RETIEEKRERAEE-- 541
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 2002384799 352 lakaLRKEIETLKTEAPALEARRAHATSALEEALAAVELFE 392
Cdd:PRK02224 542 ----LRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELN 578
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
160-397 |
2.23e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.38 E-value: 2.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 160 LPGEIASLRDSAETLEAELAELRPAIAIFTDEQADLLARKEGLEGQLTDATSEHRSRCAALEEARSRVAELSAELQSTSA 239
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 240 ALAASDAELAKLAREKGETAAALEPLPERLELARSKAAEAAESLAALQERREAMSSELEEGSAALTSRLAAYESEREALR 319
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2002384799 320 IARLELARVRKERnvvAEESAAATQEAADSEELAKALRKEIETLKTEAPALEARRAHATSALEEALAAVELFENGATA 397
Cdd:COG4942 171 AERAELEALLAEL---EEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
206-392 |
2.63e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.47 E-value: 2.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 206 LTDATSEHRSRCAALEEARsRVAELSAELQstsAALAASDAELAKLAREKGEtaaaleplpERLELARSKAAEAAESLAA 285
Cdd:COG1196 191 LEDILGELERQLEPLERQA-EKAERYRELK---EELKELEAELLLLKLRELE---------AELEELEAELEELEAELEE 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 286 LQERREAMSSELEEGSAALTSRLAAYESEREALRIARLELARVRKERNVVAEESAAATQEAADSEELAKALRKEIETLKT 365
Cdd:COG1196 258 LEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEE 337
|
170 180
....*....|....*....|....*..
gi 2002384799 366 EAPALEARRAHATSALEEALAAVELFE 392
Cdd:COG1196 338 ELEELEEELEEAEEELEEAEAELAEAE 364
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
163-386 |
3.18e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.19 E-value: 3.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 163 EIASLRDSAETLEAELAELRPAIAIFTDEQADLLARKEGLEGQLTdatsEHRSRCAALEEARSRVAELSAELQSTSAALA 242
Cdd:PRK02224 200 EEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLE----EHEERREELETLEAEIEDLRETIAETERERE 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 243 ASDAELAKLAREKGETAAALEPLPERLELARSKAAEAAESLAALQERREAMSSELEEGSAALTSRLAAYESEREALRIAR 322
Cdd:PRK02224 276 ELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLE 355
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2002384799 323 LELARVRKERNVVAEESAAATQEAADSEELAKALRKEIETLKTEAPALEARRAHATSALEEALA 386
Cdd:PRK02224 356 ERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELRE 419
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
139-353 |
3.76e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.20 E-value: 3.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 139 LREECAALERAKESSERTLVSLPGEIASLRDSAETLEAELAELRPAIAIFTDEQADLLARKEGLEGQLTDATSEHRSRCA 218
Cdd:TIGR02168 300 LEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEE 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 219 ALEEARSRVAELSAELQSTSAALAASDAELAKLAREKGETAAALEPLPERLELARSKA-----AEAAESLAALQERREAM 293
Cdd:TIGR02168 380 QLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKElqaelEELEEELEELQEELERL 459
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 294 SSELEEGSAALTSRLAAYESEREALRIARLELARVRKERNVVAEESAAATQEAADSEELA 353
Cdd:TIGR02168 460 EEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLS 519
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
72-366 |
4.24e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 45.70 E-value: 4.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 72 LETQQRQLIDLLIAQVSANDKGFADEVADLDKRGRMALEHLDRRDALAVSLATAKEAVAAAEAEAGPLREECAALERAKE 151
Cdd:COG1196 484 EELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAI 563
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 152 SSERTLVSLPGEIASLRDSAETLEAELAELRPAIAIFTDEQADLLARKEGLEGQLTDATSEHRSRCAALEEARSRVAELS 231
Cdd:COG1196 564 EYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLA 643
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 232 AELQSTSAALAASDAELAKLAREKGETAAALEplpERLELARSKAAEAAESLAALQERREAMSSELEEGSAALTSRLAAY 311
Cdd:COG1196 644 GRLREVTLEGEGGSAGGSLTGGSRRELLAALL---EAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEE 720
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 2002384799 312 ESEREALRIARLELARVRKERNVVAEESAAATQEAADSEELAKALRKEIETLKTE 366
Cdd:COG1196 721 LEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLERE 775
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
139-384 |
4.32e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.83 E-value: 4.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 139 LREECAALERAKESSERTLVSLPGEIASLRDSAETLEAELAELRpaiaiftDEQADLLARKEGLEGQLTDATSEHRSRCA 218
Cdd:TIGR02169 679 LRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIE-------KEIEQLEQEEEKLKERLEELEEDLSSLEQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 219 ALEEARSRVAELSAELQSTSAALAASDAELAKL-AREKGETAAALEPLPERLELARSKAAEAAESLAALQERREAMSSEL 297
Cdd:TIGR02169 752 EIENVKSELKELEARIEELEEDLHKLEEALNDLeARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYL 831
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 298 EEGSAALTSRLAAYESEREALRiARLELARVRKERnvVAEESAAATQEAADSEELAKALRKEIETLKTEAPALEARRAHA 377
Cdd:TIGR02169 832 EKEIQELQEQRIDLKEQIKSIE-KEIENLNGKKEE--LEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEEL 908
|
....*..
gi 2002384799 378 TSALEEA 384
Cdd:TIGR02169 909 EAQIEKK 915
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
212-393 |
7.91e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.93 E-value: 7.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 212 EHRSRCAALEEARSRVAELSAELQSTSAALAASDAELAKLAREKGETAAALEplpeRLELARSKAAEAAESLAALQERRE 291
Cdd:COG1196 226 EAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELE----ELELELEEAQAEEYELLAELARLE 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 292 AMSSELEEGSAALTSRLAAYESEREALRIARLELARVRKERnvvAEESAAATQEAADSEELAKALRKEIETLKTEAPALE 371
Cdd:COG1196 302 QDIARLEERRRELEERLEELEEELAELEEELEELEEELEEL---EEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE 378
|
170 180
....*....|....*....|..
gi 2002384799 372 ARRAHATSALEEALAAVELFEN 393
Cdd:COG1196 379 EELEELAEELLEALRAAAELAA 400
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
163-319 |
1.60e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.99 E-value: 1.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 163 EIASLRDSAETLEAELAELRpaiaiftDEQADLLARKEGLEGQLTDATSEHRSRCAALEEARSRVAELSAELQSTSAA-- 240
Cdd:COG1579 18 ELDRLEHRLKELPAELAELE-------DELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNke 90
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2002384799 241 LAASDAELAKLAREKGETAAALEPLPERLELARSKAAEAAESLAALQERREAMSSELEEGSAALTSRLAAYESEREALR 319
Cdd:COG1579 91 YEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELA 169
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
155-385 |
2.65e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 2.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 155 RTLVSLPGEIASLRDSAETLEAELAELRPAIAIFtDEQADLLARKEGLEGQLTDATSEHRSRcaALEEARSRVAELSAEL 234
Cdd:COG4913 228 DALVEHFDDLERAHEALEDAREQIELLEPIRELA-ERYAAARERLAELEYLRAALRLWFAQR--RLELLEAELEELRAEL 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 235 QSTSAALAASDAELAKLAREKGETAAALEPLP-ERLELARSKAAEAAESLAALQERREAMSSELEEGSAALTSRLAAYES 313
Cdd:COG4913 305 ARLEAELERLEARLDALREELDELEAQIRGNGgDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAA 384
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2002384799 314 EREAlriARLELARVRKERNVVAEESAAATQEAADSEELAKALRKEIETLKTEAPALEARRAHATSALEEAL 385
Cdd:COG4913 385 LRAE---AAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAEAL 453
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
190-383 |
3.47e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.13 E-value: 3.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 190 DEQADLLARKEGLEGQLTDATSEHRSRCAALEEARSRVAELSAELQSTSAALAASDAELAKLAREKGETAAALEPLPERL 269
Cdd:TIGR02169 674 AELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEI 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 270 ELARSKAAEAAESLAALQERREAMSSELEEGSA-----------ALTSRLAAYESEREA-LRIARLELARVRKERNVVAE 337
Cdd:TIGR02169 754 ENVKSELKELEARIEELEEDLHKLEEALNDLEArlshsripeiqAELSKLEEEVSRIEArLREIEQKLNRLTLEKEYLEK 833
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 2002384799 338 ESAAATQEAADSEELAKALRKEIETLKTEAPALEARRAHATSALEE 383
Cdd:TIGR02169 834 EIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRD 879
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
223-387 |
4.81e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.59 E-value: 4.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 223 ARSRVAELSAELQSTSAALAASDAELAKLAREkgetaaaLEPLPERLELARskaaeaaeslaalqerREAMSSELEEGSA 302
Cdd:COG4913 608 NRAKLAALEAELAELEEELAEAEERLEALEAE-------LDALQERREALQ----------------RLAEYSWDEIDVA 664
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 303 ALTSRLAAYESEREALRIARLELARVRKERNVVAEESAAATQEAADSEELAKALRKEIETLKTEAPALEARRAHATSALE 382
Cdd:COG4913 665 SAEREIAELEAELERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLAR 744
|
....*
gi 2002384799 383 EALAA 387
Cdd:COG4913 745 LELRA 749
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
48-383 |
5.31e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 42.23 E-value: 5.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 48 ARKARQEFAAAVSEVQALTKPSTPLETQQRQLIDLLIAQVSANDKGFADEVADLDKRGRMALEHLDRRDALAVSLATAKE 127
Cdd:COG1196 430 LAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEG 509
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 128 AVAAAEAEAGPLREECAALERAKESSERTLV------SLPGEIASLRDSAETLEAELAELRPAIAIF---TDEQADLLAR 198
Cdd:COG1196 510 VKAALLLAGLRGLAGAVAVLIGVEAAYEAALeaalaaALQNIVVEDDEVAAAAIEYLKAAKAGRATFlplDKIRARAALA 589
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 199 KEGLEGQLTDATSEHRSRCAALEEARSRVAELSAELQSTSAALAASDAELAKLAREKGETAAALEPLPERLELARSKAAE 278
Cdd:COG1196 590 AALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRE 669
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 279 AAESLAALQERREAMSSELEEGSAALTSRLAAYESEREALRIARL----ELARVRKERNVVAEESAAATQEAADSEELAK 354
Cdd:COG1196 670 LLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEerleEELEEEALEEQLEAEREELLEELLEEEELLE 749
|
330 340
....*....|....*....|....*....
gi 2002384799 355 ALRKEIETLKTEAPALEARRAHATSALEE 383
Cdd:COG1196 750 EEALEELPEPPDLEELERELERLEREIEA 778
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
235-396 |
5.87e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 5.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 235 QSTSAALAASDAELAKLAREKGETAAALEPLPERLELARSKAAEAAESLAALQERREAMSseLEEGSAALTSRLAAYESE 314
Cdd:COG4913 606 FDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVAS--AEREIAELEAELERLDAS 683
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 315 REALRIARLELARVRKERNVVAEESAAATQEAADSEELAKALRKEIETLKTEAPALEAR-RAHATSALEEALAAVELFEN 393
Cdd:COG4913 684 SDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLaRLELRALLEERFAAALGDAV 763
|
...
gi 2002384799 394 GAT 396
Cdd:COG4913 764 ERE 766
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
139-347 |
6.13e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 6.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 139 LREECAALERAKESSERTLVSLPGEIASLRDSAETLEAELAELRPAIAIFTDEQADLLARKEGLEGQLTD--ATSEHRSR 216
Cdd:COG4942 39 LEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAEllRALYRLGR 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 217 CAALEEARSrvAELSAELQSTSAALAASDAELAKLAREKGETAAALEPLPERLELARSKAAEAAESLAALQERREAMSSE 296
Cdd:COG4942 119 QPPLALLLS--PEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAE 196
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 2002384799 297 LEEGSAALTSRLAAYESEREALRIARLELARVRKERNVVAEESAAATQEAA 347
Cdd:COG4942 197 RQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAG 247
|
|
| PRK05431 |
PRK05431 |
seryl-tRNA synthetase; Provisional |
300-388 |
7.10e-04 |
|
seryl-tRNA synthetase; Provisional
Pssm-ID: 235461 [Multi-domain] Cd Length: 425 Bit Score: 41.59 E-value: 7.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 300 GSAALTSRLAAYESEREALrIARLELARvrKERNVVAEESAaatqEAADSEELAKALRKEIETLKTEAPALEARRAHATS 379
Cdd:PRK05431 22 GFPLDVDELLELDEERREL-QTELEELQ--AERNALSKEIG----QAKRKGEDAEALIAEVKELKEEIKALEAELDELEA 94
|
....*....
gi 2002384799 380 ALEEALAAV 388
Cdd:PRK05431 95 ELEELLLRI 103
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
167-262 |
1.38e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 40.33 E-value: 1.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 167 LRDSAETLEAELAELRPAIAiftdEQADLLARKEGLEGQLTDATSEHRSRCAALEEARSRVAELSAELQSTSAALAASDA 246
Cdd:PRK09039 44 LSREISGKDSALDRLNSQIA----ELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAG 119
|
90
....*....|....*..
gi 2002384799 247 ELAK-LAREKGETAAAL 262
Cdd:PRK09039 120 ELAQeLDSEKQVSARAL 136
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
139-384 |
1.68e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 40.79 E-value: 1.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 139 LREECAALERAKESSERTLvslpGEIASLRDSAETLEAELAELRPAIaiftdeqADLLARKEGLEGQLTDATSEHRSRCA 218
Cdd:PRK02224 218 LDEEIERYEEQREQARETR----DEADEVLEEHEERREELETLEAEI-------EDLRETIAETEREREELAEEVRDLRE 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 219 ALEEARSRVAELSAELQSTSAALAASDAELAKLAREKGETAAALEPLPERLELARSKAAEAAESLAALQERREamssELE 298
Cdd:PRK02224 287 RLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAE----ELR 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 299 EGSAALTSRLaayESEREALRIARLELARVRKERNVVAEESAAATQEAADSEELAKALRKEIETLKTEAPALEARRAHAT 378
Cdd:PRK02224 363 EEAAELESEL---EEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTAR 439
|
....*.
gi 2002384799 379 SALEEA 384
Cdd:PRK02224 440 ERVEEA 445
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
48-389 |
2.34e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 40.31 E-value: 2.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 48 ARKARQEFAAAVSEVQALTKPSTPLETQQRQLIDLLIAQVSANDKGFADEVADLDKRGRMALEHLDRRDALAVSLATAKE 127
Cdd:COG1196 328 LEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEE 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 128 AVAAAEAEAGPLREECAALERAKESSERTLVSLPGEIASLRDSAETLEAELAELRPAIAIFTDEQADLLARKEGLEGQLT 207
Cdd:COG1196 408 AEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELA 487
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 208 DATSEHRSRCAALEEARSR----------------------------------VAELSAELQSTSAALAASDAELAKLAR 253
Cdd:COG1196 488 EAAARLLLLLEAEADYEGFlegvkaalllaglrglagavavligveaayeaalEAALAAALQNIVVEDDEVAAAAIEYLK 567
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 254 EKGETAAALEPLPERLELARSKAAEAAESLAALQERREAMSSELEEGSAALTSRLAAYESEREALRIARLELARVRKERN 333
Cdd:COG1196 568 AAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLR 647
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 2002384799 334 VVAEESAAATQEAADSEELAKALRKEIETLKTEAPALEARRAHATSALEEALAAVE 389
Cdd:COG1196 648 EVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEE 703
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
114-319 |
3.12e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.36 E-value: 3.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 114 RRDALAVSLATAKEAVAAAEAEAGPLREECAALERAKESSERTLVSLPGEIASLRDSAETLEAELAELRPAIAIFTDEQA 193
Cdd:COG4942 28 ELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 194 DLLAR--KEGLEGQLT-----DATSEHRSRCAALEEARSRVAELSAELQSTSAALAASDAELAKLAREKGETAAALEPLP 266
Cdd:COG4942 108 ELLRAlyRLGRQPPLAlllspEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEER 187
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 2002384799 267 ERLELARSKAAEAAESLAALQERREAMSSELEEGSAALTSRLAAYESEREALR 319
Cdd:COG4942 188 AALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
146-344 |
5.44e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 38.84 E-value: 5.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 146 LERAKESSERTLVSLPGEIASLRDSAETLEAELAELRPA--IAIFTDEQADLLARKEGLEGQLTDATSEHRSRCAALEEA 223
Cdd:COG3206 166 LELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKngLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAAL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 224 RSRVAELSAELQ--STSAALAASDAELAKLAREKGETAAALEPL-PERLELARSKAAEAAESLAALQERREAMSSELEeg 300
Cdd:COG3206 246 RAQLGSGPDALPelLQSPVIQQLRAQLAELEAELAELSARYTPNhPDVIALRAQIAALRAQLQQEAQRILASLEAELE-- 323
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2002384799 301 saALTSRLAAYESEREALRIARLELARVRKERNVVAEESAAATQ 344
Cdd:COG3206 324 --ALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARE 365
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
95-318 |
7.08e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 38.76 E-value: 7.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 95 ADEVADLDKRGRMALEHLDRRDA-------LAVSLATAKEAVAAAEAEAGPLREECAALERAKESSERTLVSLPGEIASL 167
Cdd:COG1196 549 QNIVVEDDEVAAAAIEYLKAAKAgratflpLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLV 628
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 168 RDSAETLEAELAELRPAIAIFTDEQADLLARKEGLEGQLTDATSEHRSRCAALEEARSRVAELSAELQSTSAALAASDAE 247
Cdd:COG1196 629 AARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERE 708
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2002384799 248 LAKLAREKGETAAALEPLPERLELARSKAAEAAESLAALQERREAMSSELEEGSAALTSRLAAYESEREAL 318
Cdd:COG1196 709 LAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
141-389 |
9.30e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 38.58 E-value: 9.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 141 EECAALERAKESSERTLVSLPGEIASLRDSAETLEAELAELRPAIaiftdEQADLLARKEGLEGQLTDATSEHRSRCAAL 220
Cdd:PTZ00121 1287 EEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKA-----DAAKKKAEEAKKAAEAAKAEAEAAADEAEA 1361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 221 EEARSRVAELSAELQSTSAALAASDAELAKLAREKGETAAALEPLPERLELARSKAAEAAESLAALQERREAmsselEEG 300
Cdd:PTZ00121 1362 AEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKA-----DEA 1436
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002384799 301 SAALTSRLAAYESEREALRIARLELARVRKERNVVAEESAAATQEAADSEEL---AKALRKEIETLKTEA----PALEAR 373
Cdd:PTZ00121 1437 KKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAkkkAEEAKKKADEAKKAAeakkKADEAK 1516
|
250
....*....|....*.
gi 2002384799 374 RAHATSALEEALAAVE 389
Cdd:PTZ00121 1517 KAEEAKKADEAKKAEE 1532
|
|
|