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Conserved domains on  [gi|60417260|emb|CAI26263|]
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putative AV2 protein [Tomato leaf curl Madagascar virus-Menabe [Madagascar:Morondova:2001]]

Protein Classification

Gemini_V2 and WCCH domain-containing protein( domain architecture ID 10478956)

Gemini_V2 and WCCH domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Gemini_V2 pfam01524
Geminivirus V2 protein; Disruption of the V2 gene in Tomato yellow leaf curl virus (TYLCV) ...
 1-78 1.34e-56

Geminivirus V2 protein; Disruption of the V2 gene in Tomato yellow leaf curl virus (TYLCV) stopped its ability to systemically infect tomato plants, suggesting that the V2 gene product is required for successful infection of the host.


:

Pssm-ID: 366689  Cd Length: 78  Bit Score: 169.77  E-value: 1.34e-56
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 60417260     1 MWDPLLNEFPDSVHGFRCMLAVKYLQAVEETYEPNTLGHDLIRDLISVIRARDYVEATRRYNHFHARLEGSSKAELRQ 78
Cdd:pfam01524   1 MWDPLLNEFPETVHGFRCMLAVKYLQLVEKTYSPDTVGYDLIRDLISVLRARNYVEATRRYSHFHSRVQGTPESELRQ 78
WCCH pfam03716
WCCH motif; The WCCH motif is found in a retrotransposons and Gemini viruses. A specific ...
 79-103 1.10e-09

WCCH motif; The WCCH motif is found in a retrotransposons and Gemini viruses. A specific function has not been associated to this motif.


:

Pssm-ID: 202737  Cd Length: 25  Bit Score: 49.60  E-value: 1.10e-09
                          10        20
                  ....*....|....*....|....*
gi 60417260    79 PIYQPCCCPHCPRHKQASVMDLPAH 103
Cdd:pfam03716   1 PIWQPCCCPHCPRHKQKKGMDQQAP 25
 
Name Accession Description Interval E-value
Gemini_V2 pfam01524
Geminivirus V2 protein; Disruption of the V2 gene in Tomato yellow leaf curl virus (TYLCV) ...
 1-78 1.34e-56

Geminivirus V2 protein; Disruption of the V2 gene in Tomato yellow leaf curl virus (TYLCV) stopped its ability to systemically infect tomato plants, suggesting that the V2 gene product is required for successful infection of the host.


Pssm-ID: 366689  Cd Length: 78  Bit Score: 169.77  E-value: 1.34e-56
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 60417260     1 MWDPLLNEFPDSVHGFRCMLAVKYLQAVEETYEPNTLGHDLIRDLISVIRARDYVEATRRYNHFHARLEGSSKAELRQ 78
Cdd:pfam01524   1 MWDPLLNEFPETVHGFRCMLAVKYLQLVEKTYSPDTVGYDLIRDLISVLRARNYVEATRRYSHFHSRVQGTPESELRQ 78
WCCH pfam03716
WCCH motif; The WCCH motif is found in a retrotransposons and Gemini viruses. A specific ...
 79-103 1.10e-09

WCCH motif; The WCCH motif is found in a retrotransposons and Gemini viruses. A specific function has not been associated to this motif.


Pssm-ID: 202737  Cd Length: 25  Bit Score: 49.60  E-value: 1.10e-09
                          10        20
                  ....*....|....*....|....*
gi 60417260    79 PIYQPCCCPHCPRHKQASVMDLPAH 103
Cdd:pfam03716   1 PIWQPCCCPHCPRHKQKKGMDQQAP 25
 
Name Accession Description Interval E-value
Gemini_V2 pfam01524
Geminivirus V2 protein; Disruption of the V2 gene in Tomato yellow leaf curl virus (TYLCV) ...
 1-78 1.34e-56

Geminivirus V2 protein; Disruption of the V2 gene in Tomato yellow leaf curl virus (TYLCV) stopped its ability to systemically infect tomato plants, suggesting that the V2 gene product is required for successful infection of the host.


Pssm-ID: 366689  Cd Length: 78  Bit Score: 169.77  E-value: 1.34e-56
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 60417260     1 MWDPLLNEFPDSVHGFRCMLAVKYLQAVEETYEPNTLGHDLIRDLISVIRARDYVEATRRYNHFHARLEGSSKAELRQ 78
Cdd:pfam01524   1 MWDPLLNEFPETVHGFRCMLAVKYLQLVEKTYSPDTVGYDLIRDLISVLRARNYVEATRRYSHFHSRVQGTPESELRQ 78
WCCH pfam03716
WCCH motif; The WCCH motif is found in a retrotransposons and Gemini viruses. A specific ...
 79-103 1.10e-09

WCCH motif; The WCCH motif is found in a retrotransposons and Gemini viruses. A specific function has not been associated to this motif.


Pssm-ID: 202737  Cd Length: 25  Bit Score: 49.60  E-value: 1.10e-09
                          10        20
                  ....*....|....*....|....*
gi 60417260    79 PIYQPCCCPHCPRHKQASVMDLPAH 103
Cdd:pfam03716   1 PIWQPCCCPHCPRHKQKKGMDQQAP 25
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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