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Conserved domains on  [gi|90265417|emb|CAJ77099|]
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3' partial ATPase (5' is 1_837) [Acinetobacter baumannii]

Protein Classification

YifB family Mg chelatase-like AAA ATPase( domain architecture ID 11427378)

YifB family Mg chelatase-like AAA ATPase with an AAA (ATPases Associated with various cellular Activities) domain

Gene Ontology:  GO:0005524|GO:0016887
PubMed:  9359397

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YifB COG0606
Predicted Mg-chelatase, contains ChlI-like and ATPase domains, YifB family [Posttranslational ...
 3-280 6.12e-163

Predicted Mg-chelatase, contains ChlI-like and ATPase domains, YifB family [Posttranslational modification, protein turnover, chaperones];


:

Pssm-ID: 440371 [Multi-domain]  Cd Length: 502  Bit Score: 461.82  E-value: 6.12e-163
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90265417   3 FSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSRLD 82
Cdd:COG0606   2 LARVYSVALLGIEAPLVEVEVDISNGLPGFTIVGLPDTAVKESRERVRAALKNSGFEFPAKRITVNLAPADLPKEGSRFD 81

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90265417  83 LPIALGILIASGQLPENCTEDFEFIGELALDGHVRPVSGALTLAMACQQAQ-HKIVLPVDNSQDISHLPNLECYPVNHLK 161
Cdd:COG0606  82 LPIALGILAASGQIPAEALEDYVFLGELSLDGSLRPVRGVLPAALAAREAGiRRLIVPAANAAEAALVPGIEVYGASSLL 161

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90265417 162 EVCEHFLGTQKLAHAQPSAHSNEMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLSTQ 241
Cdd:COG0606 162 EVVAFLRGEQPLPPAEPDAPPAEPPYEPDLADVKGQEQAKRALEIAAAGGHNLLMIGPPGSGKTMLARRLPGILPPLTEE 241

                       250       260       270       280
                ....*....|....*....|....*....|....*....|...
gi 90265417 242 ETLEVASIYSIS----NTPHTFGQRPFRAPHHTASAIALVGGG 280
Cdd:COG0606 242 EALEVTAIHSVAgllpPDGGLIRRRPFRAPHHTASAAALVGGG 284
 
Name Accession Description Interval E-value
YifB COG0606
Predicted Mg-chelatase, contains ChlI-like and ATPase domains, YifB family [Posttranslational ...
 3-280 6.12e-163

Predicted Mg-chelatase, contains ChlI-like and ATPase domains, YifB family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440371 [Multi-domain]  Cd Length: 502  Bit Score: 461.82  E-value: 6.12e-163
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90265417   3 FSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSRLD 82
Cdd:COG0606   2 LARVYSVALLGIEAPLVEVEVDISNGLPGFTIVGLPDTAVKESRERVRAALKNSGFEFPAKRITVNLAPADLPKEGSRFD 81

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90265417  83 LPIALGILIASGQLPENCTEDFEFIGELALDGHVRPVSGALTLAMACQQAQ-HKIVLPVDNSQDISHLPNLECYPVNHLK 161
Cdd:COG0606  82 LPIALGILAASGQIPAEALEDYVFLGELSLDGSLRPVRGVLPAALAAREAGiRRLIVPAANAAEAALVPGIEVYGASSLL 161

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90265417 162 EVCEHFLGTQKLAHAQPSAHSNEMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLSTQ 241
Cdd:COG0606 162 EVVAFLRGEQPLPPAEPDAPPAEPPYEPDLADVKGQEQAKRALEIAAAGGHNLLMIGPPGSGKTMLARRLPGILPPLTEE 241

                       250       260       270       280
                ....*....|....*....|....*....|....*....|...
gi 90265417 242 ETLEVASIYSIS----NTPHTFGQRPFRAPHHTASAIALVGGG 280
Cdd:COG0606 242 EALEVTAIHSVAgllpPDGGLIRRRPFRAPHHTASAAALVGGG 284
TIGR00368 TIGR00368
Mg chelatase-related protein; The N-terminal end matches very strongly a pfam Mg_chelatase ...
 6-280 1.73e-108

Mg chelatase-related protein; The N-terminal end matches very strongly a pfam Mg_chelatase domain. [Unknown function, General]


Pssm-ID: 129465 [Multi-domain]  Cd Length: 499  Bit Score: 323.33  E-value: 1.73e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90265417     6 IYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSRLDLPI 85
Cdd:TIGR00368   1 VYSRSSLGVEAPLITIEVDISKGLPGITIVGLPETTVKESRERVKSAIKNSGFHFPAKRITINLAPADLPKEGGRFDLPI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90265417    86 ALGILIASGQLPENCTEDFEFIGELALDGHVRPVSGALTLAMACQQAQHK-IVLPVDNSQDISHLPNLECYPVNHLKEVC 164
Cdd:TIGR00368  81 AIGILAASEQLDAKNLGEYLFLGELALDGKLRGIKGVLPAIALAQKSGRKfIIVPKENAEEASLIDGLNIYGADHLKEVV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90265417   165 EHFLGTQKL----AHAQPSAHSNEMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLST 240
Cdd:TIGR00368 161 KFLEGSEKLpprtNTKPKSIINKSYIIDLDLKDIKGQQHAKRALEIAAAGGHNLLLFGPPGSGKTMLASRLQGILPPLTN 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 90265417   241 QETLEVASIYSISNTPHTFG---QRPFRAPHHTASAIALVGGG 280
Cdd:TIGR00368 241 EEAIETARIWSLVGKLIDRKqikQRPFRSPHHSASKPALVGGG 283
PRK09862 PRK09862
ATP-dependent protease;
1-280 2.50e-106

ATP-dependent protease;


Pssm-ID: 182120 [Multi-domain]  Cd Length: 506  Bit Score: 318.08  E-value: 2.50e-106
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90265417    1 MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR 80
Cdd:PRK09862   1 MSLSIVHTRAALGVNAPPITVEVHISKGLPGLTMVGLPETTVKEARDRVRSAIINSGYEYPAKKITINLAPADLPKEGGR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90265417   81 LDLPIALGILIASGQLPENCTEDFEFIGELALDGHVRPVSGALTLAMACQQAQHKIVLPVDNSQDISHLPNLECYPVNHL 160
Cdd:PRK09862  81 YDLPIAIALLAASEQLTANKLDEYELVGELALTGALRGVPGAISSATEAIKSGRKIIVAKDNEDEVGLINGEGCLIADHL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90265417  161 KEVCEHFLGTQKLAHAQPS-AHSNEMPYkfDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLS 239
Cdd:PRK09862 161 QAVCAFLEGKHALERPKPTdAVSRALQH--DLSDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLS 238

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....
gi 90265417  240 TQETLEVASIYSISNT---PHTFGQRPFRAPHHTASAIALVGGG 280
Cdd:PRK09862 239 NEEALESAAILSLVNAesvQKQWRQRPFRSPHHSASLTAMVGGG 282
ChlI pfam13541
Subunit ChlI of Mg-chelatase;
21-142 5.09e-61

Subunit ChlI of Mg-chelatase;


Pssm-ID: 433293 [Multi-domain]  Cd Length: 121  Bit Score: 189.20  E-value: 5.09e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90265417    21 VEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSRLDLPIALGILIASGQLPEnc 100
Cdd:pfam13541   1 VEVDVSKGLPAFTIVGLPDTAVKESKERVRAALKNSGFEFPPKRITVNLAPADLKKEGSSFDLPIAIGILAAQGQIPV-- 78

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 90265417   101 TEDFEFIGELALDGHVRPVSGALTLAMACQQAQHK-IVLPVDN 142
Cdd:pfam13541  79 LEETIFLGELSLDGSLRPVRGALPIALAARKHGFRgLIVPKEN 121
RecA-like_protease cd19481
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ...
 194-231 8.65e-04

proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410889 [Multi-domain]  Cd Length: 158  Bit Score: 39.19  E-value: 8.65e-04
                        10        20        30
                ....*....|....*....|....*....|....*...
gi 90265417 194 VKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRL 231
Cdd:cd19481   9 VEAPRRGSRLRRYGLGLPKGILLYGPPGTGKTLLAKAL 46
 
Name Accession Description Interval E-value
YifB COG0606
Predicted Mg-chelatase, contains ChlI-like and ATPase domains, YifB family [Posttranslational ...
 3-280 6.12e-163

Predicted Mg-chelatase, contains ChlI-like and ATPase domains, YifB family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440371 [Multi-domain]  Cd Length: 502  Bit Score: 461.82  E-value: 6.12e-163
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90265417   3 FSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSRLD 82
Cdd:COG0606   2 LARVYSVALLGIEAPLVEVEVDISNGLPGFTIVGLPDTAVKESRERVRAALKNSGFEFPAKRITVNLAPADLPKEGSRFD 81

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90265417  83 LPIALGILIASGQLPENCTEDFEFIGELALDGHVRPVSGALTLAMACQQAQ-HKIVLPVDNSQDISHLPNLECYPVNHLK 161
Cdd:COG0606  82 LPIALGILAASGQIPAEALEDYVFLGELSLDGSLRPVRGVLPAALAAREAGiRRLIVPAANAAEAALVPGIEVYGASSLL 161

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90265417 162 EVCEHFLGTQKLAHAQPSAHSNEMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLSTQ 241
Cdd:COG0606 162 EVVAFLRGEQPLPPAEPDAPPAEPPYEPDLADVKGQEQAKRALEIAAAGGHNLLMIGPPGSGKTMLARRLPGILPPLTEE 241

                       250       260       270       280
                ....*....|....*....|....*....|....*....|...
gi 90265417 242 ETLEVASIYSIS----NTPHTFGQRPFRAPHHTASAIALVGGG 280
Cdd:COG0606 242 EALEVTAIHSVAgllpPDGGLIRRRPFRAPHHTASAAALVGGG 284
TIGR00368 TIGR00368
Mg chelatase-related protein; The N-terminal end matches very strongly a pfam Mg_chelatase ...
 6-280 1.73e-108

Mg chelatase-related protein; The N-terminal end matches very strongly a pfam Mg_chelatase domain. [Unknown function, General]


Pssm-ID: 129465 [Multi-domain]  Cd Length: 499  Bit Score: 323.33  E-value: 1.73e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90265417     6 IYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSRLDLPI 85
Cdd:TIGR00368   1 VYSRSSLGVEAPLITIEVDISKGLPGITIVGLPETTVKESRERVKSAIKNSGFHFPAKRITINLAPADLPKEGGRFDLPI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90265417    86 ALGILIASGQLPENCTEDFEFIGELALDGHVRPVSGALTLAMACQQAQHK-IVLPVDNSQDISHLPNLECYPVNHLKEVC 164
Cdd:TIGR00368  81 AIGILAASEQLDAKNLGEYLFLGELALDGKLRGIKGVLPAIALAQKSGRKfIIVPKENAEEASLIDGLNIYGADHLKEVV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90265417   165 EHFLGTQKL----AHAQPSAHSNEMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLST 240
Cdd:TIGR00368 161 KFLEGSEKLpprtNTKPKSIINKSYIIDLDLKDIKGQQHAKRALEIAAAGGHNLLLFGPPGSGKTMLASRLQGILPPLTN 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 90265417   241 QETLEVASIYSISNTPHTFG---QRPFRAPHHTASAIALVGGG 280
Cdd:TIGR00368 241 EEAIETARIWSLVGKLIDRKqikQRPFRSPHHSASKPALVGGG 283
PRK09862 PRK09862
ATP-dependent protease;
1-280 2.50e-106

ATP-dependent protease;


Pssm-ID: 182120 [Multi-domain]  Cd Length: 506  Bit Score: 318.08  E-value: 2.50e-106
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90265417    1 MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR 80
Cdd:PRK09862   1 MSLSIVHTRAALGVNAPPITVEVHISKGLPGLTMVGLPETTVKEARDRVRSAIINSGYEYPAKKITINLAPADLPKEGGR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90265417   81 LDLPIALGILIASGQLPENCTEDFEFIGELALDGHVRPVSGALTLAMACQQAQHKIVLPVDNSQDISHLPNLECYPVNHL 160
Cdd:PRK09862  81 YDLPIAIALLAASEQLTANKLDEYELVGELALTGALRGVPGAISSATEAIKSGRKIIVAKDNEDEVGLINGEGCLIADHL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90265417  161 KEVCEHFLGTQKLAHAQPS-AHSNEMPYkfDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLS 239
Cdd:PRK09862 161 QAVCAFLEGKHALERPKPTdAVSRALQH--DLSDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLS 238

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....
gi 90265417  240 TQETLEVASIYSISNT---PHTFGQRPFRAPHHTASAIALVGGG 280
Cdd:PRK09862 239 NEEALESAAILSLVNAesvQKQWRQRPFRSPHHSASLTAMVGGG 282
ChlI pfam13541
Subunit ChlI of Mg-chelatase;
21-142 5.09e-61

Subunit ChlI of Mg-chelatase;


Pssm-ID: 433293 [Multi-domain]  Cd Length: 121  Bit Score: 189.20  E-value: 5.09e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90265417    21 VEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSRLDLPIALGILIASGQLPEnc 100
Cdd:pfam13541   1 VEVDVSKGLPAFTIVGLPDTAVKESKERVRAALKNSGFEFPPKRITVNLAPADLKKEGSSFDLPIAIGILAAQGQIPV-- 78

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 90265417   101 TEDFEFIGELALDGHVRPVSGALTLAMACQQAQHK-IVLPVDN 142
Cdd:pfam13541  79 LEETIFLGELSLDGSLRPVRGALPIALAARKHGFRgLIVPKEN 121
Mg_chelatase pfam01078
Magnesium chelatase, subunit ChlI; Magnesium-chelatase is a three-component enzyme that ...
 190-280 8.60e-51

Magnesium chelatase, subunit ChlI; Magnesium-chelatase is a three-component enzyme that catalyzes the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. Due to this, it is thought that Mg-chelatase has an important role in channelling inter- mediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weight between 38-42 kDa.


Pssm-ID: 426032 [Multi-domain]  Cd Length: 207  Bit Score: 165.79  E-value: 8.60e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90265417   190 DLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLSTQETLEVASIYSISNTPHTFG---QRPFRA 266
Cdd:pfam01078   1 DLADVKGQEQAKRALEIAAAGGHNLLMIGPPGSGKTMLAKRLPGILPPLTEAEALEVTAIHSVAGLGGDGGlirRRPFRA 80

                          90
                  ....*....|....
gi 90265417   267 PHHTASAIALVGGG 280
Cdd:pfam01078  81 PHHSASAAALVGGG 94
SpoVK COG0464
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ...
 191-235 1.75e-05

AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];


Pssm-ID: 440232 [Multi-domain]  Cd Length: 397  Bit Score: 45.67  E-value: 1.75e-05
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....
gi 90265417 191 LADVKGQLR-----PRRALEIAAAGGHS----LLFKGPPGTGKTLLASRLPSIL 235
Cdd:COG0464 162 LEEVKEELRelvalPLKRPELREEYGLPpprgLLLYGPPGTGKTLLARALAGEL 215
MoxR COG0714
MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway ...
 194-228 1.02e-04

MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 440478 [Multi-domain]  Cd Length: 292  Bit Score: 42.85  E-value: 1.02e-04
                        10        20        30
                ....*....|....*....|....*....|....*.
gi 90265417 194 VKGQLRPRRALEIA-AAGGHsLLFKGPPGTGKTLLA 228
Cdd:COG0714  14 YVGQEELIELVLIAlLAGGH-LLLEGVPGVGKTTLA 48
PRK13342 PRK13342
recombination factor protein RarA; Reviewed
 191-229 2.31e-04

recombination factor protein RarA; Reviewed


Pssm-ID: 237355 [Multi-domain]  Cd Length: 413  Bit Score: 41.99  E-value: 2.31e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 90265417  191 LADVKGQ---LRPRRALEIAAAGG--HSLLFKGPPGTGKTLLAS 229
Cdd:PRK13342  11 LDEVVGQehlLGPGKPLRRMIEAGrlSSMILWGPPGTGKTTLAR 54
RarA COG2256
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, ...
 191-228 2.87e-04

Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, recombination and repair];


Pssm-ID: 441857 [Multi-domain]  Cd Length: 439  Bit Score: 41.97  E-value: 2.87e-04
                        10        20        30        40
                ....*....|....*....|....*....|....*....|...
gi 90265417 191 LADVKGQ---LRPRRALEIAAAGG--HSLLFKGPPGTGKTLLA 228
Cdd:COG2256  24 LDEVVGQehlLGPGKPLRRAIEAGrlSSMILWGPPGTGKTTLA 66
DnaX COG2812
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair];
182-228 5.06e-04

DNA polymerase III, gamma/tau subunits [Replication, recombination and repair];


Pssm-ID: 442061 [Multi-domain]  Cd Length: 340  Bit Score: 40.95  E-value: 5.06e-04
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
gi 90265417 182 SNEMPYKFDlaDVKGQLRPRRALEIAAAGG---HSLLFKGPPGTGKTLLA 228
Cdd:COG2812   2 SYQVPQTFD--DVVGQEHVVRTLKNALASGrlaHAYLFTGPRGVGKTTLA 49
COG1223 COG1223
Predicted ATPase, AAA+ superfamily [General function prediction only];
212-231 8.02e-04

Predicted ATPase, AAA+ superfamily [General function prediction only];


Pssm-ID: 440836 [Multi-domain]  Cd Length: 246  Bit Score: 39.87  E-value: 8.02e-04
                        10        20
                ....*....|....*....|
gi 90265417 212 HSLLFKGPPGTGKTLLASRL 231
Cdd:COG1223  36 RKILFYGPPGTGKTMLAEAL 55
RecA-like_protease cd19481
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ...
 194-231 8.65e-04

proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410889 [Multi-domain]  Cd Length: 158  Bit Score: 39.19  E-value: 8.65e-04
                        10        20        30
                ....*....|....*....|....*....|....*...
gi 90265417 194 VKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRL 231
Cdd:cd19481   9 VEAPRRGSRLRRYGLGLPKGILLYGPPGTGKTLLAKAL 46
Sms COG1066
DNA repair protein RadA/Sms, contains AAA+ ATPase domain [Replication, recombination and ...
 82-168 1.02e-03

DNA repair protein RadA/Sms, contains AAA+ ATPase domain [Replication, recombination and repair];


Pssm-ID: 440685 [Multi-domain]  Cd Length: 453  Bit Score: 40.42  E-value: 1.02e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90265417  82 DLPIALGIliASG----QLPENCTedfeFIGELALDGHVRPVSGALT-LAMAcqqAQH---KIVLPVDNSQDIShLPNLE 153
Cdd:COG1066 369 DLAVALAI--ASSfrdrPLPPDTV----FFGEVGLTGEIRPVSRIEQrLKEA---AKLgfkRAIVPKGNKKKLK-PKGIE 438

                        90
                ....*....|....*
gi 90265417 154 CYPVNHLKEVCEHFL 168
Cdd:COG1066 439 IIGVSTLEEALEALF 453
RPT1 COG1222
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein ...
 191-231 1.38e-03

ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440835 [Multi-domain]  Cd Length: 326  Bit Score: 39.60  E-value: 1.38e-03
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
gi 90265417 191 LADVKGQLR-----PRRALEIAAAGG----HSLLFKGPPGTGKTLLASRL 231
Cdd:COG1222  83 LDEQIEEIReavelPLKNPELFRKYGieppKGVLLYGPPGTGKTLLAKAV 132
AAA_5 pfam07728
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ...
 213-244 5.60e-03

AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.


Pssm-ID: 400191 [Multi-domain]  Cd Length: 135  Bit Score: 36.50  E-value: 5.60e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 90265417   213 SLLFKGPPGTGKTLLASRLPSILPPLSTQETL 244
Cdd:pfam07728   1 GVLLVGPPGTGKTELAERLAAALSNRPVFYVQ 32
TIP49 COG1224
DNA helicase TIP49, TBP-interacting protein [Transcription];
196-228 6.66e-03

DNA helicase TIP49, TBP-interacting protein [Transcription];


Pssm-ID: 440837 [Multi-domain]  Cd Length: 452  Bit Score: 37.64  E-value: 6.66e-03
                        10        20        30        40
                ....*....|....*....|....*....|....*....|
gi 90265417 196 GQLRPRRALEIAAA-------GGHSLLFKGPPGTGKTLLA 228
Cdd:COG1224  42 GQVEAREAAGIVVKmikegkmAGKGILIVGPPGTGKTALA 81
PRK13341 PRK13341
AAA family ATPase;
201-229 6.90e-03

AAA family ATPase;


Pssm-ID: 237354 [Multi-domain]  Cd Length: 725  Bit Score: 37.73  E-value: 6.90e-03
                         10        20
                 ....*....|....*....|....*....
gi 90265417  201 RRAleIAAAGGHSLLFKGPPGTGKTLLAS 229
Cdd:PRK13341  44 RRA--IKADRVGSLILYGPPGVGKTTLAR 70
AAA pfam00004
ATPase family associated with various cellular activities (AAA); AAA family proteins often ...
 214-228 6.96e-03

ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.


Pssm-ID: 459627 [Multi-domain]  Cd Length: 130  Bit Score: 36.03  E-value: 6.96e-03
                          10
                  ....*....|....*
gi 90265417   214 LLFKGPPGTGKTLLA 228
Cdd:pfam00004   1 LLLYGPPGTGKTTLA 15
SSL2 COG1061
Superfamily II DNA or RNA helicase [Transcription, Replication, recombination, and repair];
195-231 7.64e-03

Superfamily II DNA or RNA helicase [Transcription, Replication, recombination, and repair];


Pssm-ID: 440681 [Multi-domain]  Cd Length: 566  Bit Score: 37.70  E-value: 7.64e-03
                        10        20        30        40
                ....*....|....*....|....*....|....*....|...
gi 90265417 195 KGQLRP--RRALEIAAA----GGHSLLFKGPPGTGKTLLASRL 231
Cdd:COG1061  78 SFELRPyqQEALEALLAalerGGGRGLVVAPTGTGKTVLALAL 120
AAA cd00009
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ...
 211-231 7.95e-03

The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.


Pssm-ID: 99707 [Multi-domain]  Cd Length: 151  Bit Score: 36.36  E-value: 7.95e-03
                        10        20
                ....*....|....*....|.
gi 90265417 211 GHSLLFKGPPGTGKTLLASRL 231
Cdd:cd00009  19 PKNLLLYGPPGTGKTTLARAI 39
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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