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Conserved domains on  [gi|119581347|gb|EAW60943|]
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neighbor of BRCA1 gene 2, isoform CRA_a [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ARL17 super family cl24419
ADP-ribosylation factor-like protein 17; ARL17 is a family of proteins found in primates. ...
 1-61 2.41e-32

ADP-ribosylation factor-like protein 17; ARL17 is a family of proteins found in primates. Proteins in this family are typically between 82 and 130 amino acids in length. Members of this family are also referred to as NBR2 or Neighbour of BRAC1 gene 2.


The actual alignment was detected with superfamily member pfam15840:

Pssm-ID: 464905  Cd Length: 61  Bit Score: 107.93  E-value: 2.41e-32
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 119581347    1 MWKGGRSHPFLPCSSRRAGSGGQLDSILPHQSPAWGPWGCKDLSSGVPSFLTSSILWKSAV 61
Cdd:pfam15840   1 MWKGGRSHPFLPHSSRCAGSGGQLDSILPHQSPAWGPWGCKDLSSGFPSFLTSSILWKSAV 61
 
Name Accession Description Interval E-value
ARL17 pfam15840
ADP-ribosylation factor-like protein 17; ARL17 is a family of proteins found in primates. ...
 1-61 2.41e-32

ADP-ribosylation factor-like protein 17; ARL17 is a family of proteins found in primates. Proteins in this family are typically between 82 and 130 amino acids in length. Members of this family are also referred to as NBR2 or Neighbour of BRAC1 gene 2.


Pssm-ID: 464905  Cd Length: 61  Bit Score: 107.93  E-value: 2.41e-32
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 119581347    1 MWKGGRSHPFLPCSSRRAGSGGQLDSILPHQSPAWGPWGCKDLSSGVPSFLTSSILWKSAV 61
Cdd:pfam15840   1 MWKGGRSHPFLPHSSRCAGSGGQLDSILPHQSPAWGPWGCKDLSSGFPSFLTSSILWKSAV 61
 
Name Accession Description Interval E-value
ARL17 pfam15840
ADP-ribosylation factor-like protein 17; ARL17 is a family of proteins found in primates. ...
 1-61 2.41e-32

ADP-ribosylation factor-like protein 17; ARL17 is a family of proteins found in primates. Proteins in this family are typically between 82 and 130 amino acids in length. Members of this family are also referred to as NBR2 or Neighbour of BRAC1 gene 2.


Pssm-ID: 464905  Cd Length: 61  Bit Score: 107.93  E-value: 2.41e-32
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 119581347    1 MWKGGRSHPFLPCSSRRAGSGGQLDSILPHQSPAWGPWGCKDLSSGVPSFLTSSILWKSAV 61
Cdd:pfam15840   1 MWKGGRSHPFLPHSSRCAGSGGQLDSILPHQSPAWGPWGCKDLSSGFPSFLTSSILWKSAV 61
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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