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Conserved domains on  [gi|119585011|gb|EAW64607|]
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ribosomal protein L14, isoform CRA_b [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
valS super family cl36437
valyl-tRNA synthetase; Provisional
 20-109 3.10e-08

valyl-tRNA synthetase; Provisional


The actual alignment was detected with superfamily member PRK14900:

Pssm-ID: 237855 [Multi-domain]  Cd Length: 1052  Bit Score: 49.99  E-value: 3.10e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119585011   20 IKNEVKKLQKAALLKASPKKAPGTKGTAAAAAAAAAAAAKVPAKKitAASKKAPAQKVPAqkatgQKAAPAPKAQKGQKA 99
Cdd:PRK14900  970 VAEAVRKTVRRSVKKAAATRAAMKKKVAKKAPAKKAAAKKAAAKK--AAAKKKVAKKAPA-----KKVARKPAAKKAAKK 1042

                          90
                  ....*....|
gi 119585011  100 PAQKAPAPKA 109
Cdd:PRK14900 1043 PARKAAGRKA 1052
eL14 super family cl44490
Vairimorpha necatrix ribosomal protein eL14 and similar proteins; eL14 is a component of the ...
 1-20 1.29e-06

Vairimorpha necatrix ribosomal protein eL14 and similar proteins; eL14 is a component of the large subunit (LSU) of the microsporidian ribosome that reveals a prokaryotic-like rRNA core covered with eukaryotic ribosomal proteins.


The actual alignment was detected with superfamily member cd23702:

Pssm-ID: 479759 [Multi-domain]  Cd Length: 82  Bit Score: 42.82  E-value: 1.29e-06
                         10        20
                 ....*....|....*....|
gi 119585011   1 MTDFDRFKVMKAKKMRNRII 20
Cdd:cd23702   63 LTDFDRFKVMLAKKKRRKLV 82
 
Name Accession Description Interval E-value
valS PRK14900
valyl-tRNA synthetase; Provisional
 20-109 3.10e-08

valyl-tRNA synthetase; Provisional


Pssm-ID: 237855 [Multi-domain]  Cd Length: 1052  Bit Score: 49.99  E-value: 3.10e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119585011   20 IKNEVKKLQKAALLKASPKKAPGTKGTAAAAAAAAAAAAKVPAKKitAASKKAPAQKVPAqkatgQKAAPAPKAQKGQKA 99
Cdd:PRK14900  970 VAEAVRKTVRRSVKKAAATRAAMKKKVAKKAPAKKAAAKKAAAKK--AAAKKKVAKKAPA-----KKVARKPAAKKAAKK 1042

                          90
                  ....*....|
gi 119585011  100 PAQKAPAPKA 109
Cdd:PRK14900 1043 PARKAAGRKA 1052
eL14 cd23702
Vairimorpha necatrix ribosomal protein eL14 and similar proteins; eL14 is a component of the ...
 1-20 1.29e-06

Vairimorpha necatrix ribosomal protein eL14 and similar proteins; eL14 is a component of the large subunit (LSU) of the microsporidian ribosome that reveals a prokaryotic-like rRNA core covered with eukaryotic ribosomal proteins.


Pssm-ID: 467915 [Multi-domain]  Cd Length: 82  Bit Score: 42.82  E-value: 1.29e-06
                         10        20
                 ....*....|....*....|
gi 119585011   1 MTDFDRFKVMKAKKMRNRII 20
Cdd:cd23702   63 LTDFDRFKVMLAKKKRRKLV 82
 
Name Accession Description Interval E-value
valS PRK14900
valyl-tRNA synthetase; Provisional
 20-109 3.10e-08

valyl-tRNA synthetase; Provisional


Pssm-ID: 237855 [Multi-domain]  Cd Length: 1052  Bit Score: 49.99  E-value: 3.10e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119585011   20 IKNEVKKLQKAALLKASPKKAPGTKGTAAAAAAAAAAAAKVPAKKitAASKKAPAQKVPAqkatgQKAAPAPKAQKGQKA 99
Cdd:PRK14900  970 VAEAVRKTVRRSVKKAAATRAAMKKKVAKKAPAKKAAAKKAAAKK--AAAKKKVAKKAPA-----KKVARKPAAKKAAKK 1042

                          90
                  ....*....|
gi 119585011  100 PAQKAPAPKA 109
Cdd:PRK14900 1043 PARKAAGRKA 1052
eL14 cd23702
Vairimorpha necatrix ribosomal protein eL14 and similar proteins; eL14 is a component of the ...
 1-20 1.29e-06

Vairimorpha necatrix ribosomal protein eL14 and similar proteins; eL14 is a component of the large subunit (LSU) of the microsporidian ribosome that reveals a prokaryotic-like rRNA core covered with eukaryotic ribosomal proteins.


Pssm-ID: 467915 [Multi-domain]  Cd Length: 82  Bit Score: 42.82  E-value: 1.29e-06
                         10        20
                 ....*....|....*....|
gi 119585011   1 MTDFDRFKVMKAKKMRNRII 20
Cdd:cd23702   63 LTDFDRFKVMLAKKKRRKLV 82
valS PRK14900
valyl-tRNA synthetase; Provisional
 35-113 2.83e-05

valyl-tRNA synthetase; Provisional


Pssm-ID: 237855 [Multi-domain]  Cd Length: 1052  Bit Score: 41.52  E-value: 2.83e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119585011   35 ASPKKAPGTKGTAAAAAAAAAAAAKVPAKKITA----ASKKAPAQKVPAQKATGQKAapAPKAQKGQKAPAQ---KAPAP 107
Cdd:PRK14900  959 AATAVASGIEKVAEAVRKTVRRSVKKAAATRAAmkkkVAKKAPAKKAAAKKAAAKKA--AAKKKVAKKAPAKkvaRKPAA 1036


                  ....*.
gi 119585011  108 KASGKK 113
Cdd:PRK14900 1037 KKAAKK 1042
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 35-114 7.58e-05

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 40.26  E-value: 7.58e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119585011   35 ASPKKAPGTKGTAAAAAAAAAAAAKVPAKKITAASKKAPAQKVPAQKATGQKAAPAPKAQKGQKAPAQKAPAPKASGKKA 114
Cdd:PRK12270   34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAV 113
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 35-110 4.33e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 38.33  E-value: 4.33e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 119585011   35 ASPKKAPGTKGTAAAAAAAAAAAAKVPAKKITAASKKAPAQKVPAQKATGQKAAPAPKAQKGQKAPAQKAPAPKAS 110
Cdd:PRK12270   43 APTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVT 118
valS PRK14900
valyl-tRNA synthetase; Provisional
 63-114 5.11e-04

valyl-tRNA synthetase; Provisional


Pssm-ID: 237855 [Multi-domain]  Cd Length: 1052  Bit Score: 38.05  E-value: 5.11e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 119585011   63 KKITAASKK---APAQKVPAQKATGQKAAPAPKAQKgqKAPAQKAPAPKASGKKA 114
Cdd:PRK14900  968 EKVAEAVRKtvrRSVKKAAATRAAMKKKVAKKAPAK--KAAAKKAAAKKAAAKKK 1020
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 35-111 1.31e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 36.79  E-value: 1.31e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 119585011   35 ASPKKAPGTKGTAAAAAAAAAAAAKVPAKKITAASKKAPAQKVPAQKATGQKAAPAPKAQKGQKAPAQKAPAPKASG 111
Cdd:PRK12270   40 STAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDE 116
valS PRK14900
valyl-tRNA synthetase; Provisional
 59-114 8.01e-03

valyl-tRNA synthetase; Provisional


Pssm-ID: 237855 [Multi-domain]  Cd Length: 1052  Bit Score: 34.58  E-value: 8.01e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 119585011   59 KVPAKKITAASKKAPAQKVPAQKATGQKAA---PAPKAQKGQKAPAQKAPAPKASGKKA 114
Cdd:PRK14900  977 TVRRSVKKAAATRAAMKKKVAKKAPAKKAAakkAAAKKAAAKKKVAKKAPAKKVARKPA 1035
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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