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chromosome 17 open reading frame 42, isoform CRA_b [Homo sapiens]
ComEA family DNA-binding protein( domain architecture ID 11446237)
ComEA family DNA-binding protein contains a helix-hairpin-helix (HhH) motif
List of domain hits
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Name | Accession | Description | Interval | E-value | ||
ComEA | COG1555 | DNA uptake protein ComE or related DNA-binding protein [Replication, recombination and repair]; ... |
77-119 | 2.56e-08 | ||
DNA uptake protein ComE or related DNA-binding protein [Replication, recombination and repair]; : Pssm-ID: 441164 [Multi-domain] Cd Length: 72 Bit Score: 48.32 E-value: 2.56e-08
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Name | Accession | Description | Interval | E-value | ||
ComEA | COG1555 | DNA uptake protein ComE or related DNA-binding protein [Replication, recombination and repair]; ... |
77-119 | 2.56e-08 | ||
DNA uptake protein ComE or related DNA-binding protein [Replication, recombination and repair]; Pssm-ID: 441164 [Multi-domain] Cd Length: 72 Bit Score: 48.32 E-value: 2.56e-08
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HHH_3 | pfam12836 | Helix-hairpin-helix motif; The HhH domain is a short DNA-binding domain. |
77-124 | 4.45e-08 | ||
Helix-hairpin-helix motif; The HhH domain is a short DNA-binding domain. Pssm-ID: 463723 [Multi-domain] Cd Length: 62 Bit Score: 47.48 E-value: 4.45e-08
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TIGR00426 | TIGR00426 | competence protein ComEA helix-hairpin-helix repeat region; Members of the subfamily ... |
77-119 | 1.26e-03 | ||
competence protein ComEA helix-hairpin-helix repeat region; Members of the subfamily recognized by this model include competence protein ComEA and closely related proteins from a number of species that exhibit competence for transformation by exongenous DNA, including Streptococcus pneumoniae, Bacillus subtilis, Neisseria meningitidis, and Haemophilus influenzae. This model represents a region of two tandem copies of a helix-hairpin-helix domain (pfam00633), each about 30 residues in length. Limited sequence similarity can be found among some members of this family N-terminal to the region covered by this model. [Cellular processes, DNA transformation] Pssm-ID: 129520 [Multi-domain] Cd Length: 69 Bit Score: 35.68 E-value: 1.26e-03
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Name | Accession | Description | Interval | E-value | ||
ComEA | COG1555 | DNA uptake protein ComE or related DNA-binding protein [Replication, recombination and repair]; ... |
77-119 | 2.56e-08 | ||
DNA uptake protein ComE or related DNA-binding protein [Replication, recombination and repair]; Pssm-ID: 441164 [Multi-domain] Cd Length: 72 Bit Score: 48.32 E-value: 2.56e-08
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HHH_3 | pfam12836 | Helix-hairpin-helix motif; The HhH domain is a short DNA-binding domain. |
77-124 | 4.45e-08 | ||
Helix-hairpin-helix motif; The HhH domain is a short DNA-binding domain. Pssm-ID: 463723 [Multi-domain] Cd Length: 62 Bit Score: 47.48 E-value: 4.45e-08
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TIGR00426 | TIGR00426 | competence protein ComEA helix-hairpin-helix repeat region; Members of the subfamily ... |
77-119 | 1.26e-03 | ||
competence protein ComEA helix-hairpin-helix repeat region; Members of the subfamily recognized by this model include competence protein ComEA and closely related proteins from a number of species that exhibit competence for transformation by exongenous DNA, including Streptococcus pneumoniae, Bacillus subtilis, Neisseria meningitidis, and Haemophilus influenzae. This model represents a region of two tandem copies of a helix-hairpin-helix domain (pfam00633), each about 30 residues in length. Limited sequence similarity can be found among some members of this family N-terminal to the region covered by this model. [Cellular processes, DNA transformation] Pssm-ID: 129520 [Multi-domain] Cd Length: 69 Bit Score: 35.68 E-value: 1.26e-03
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Blast search parameters | ||||
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