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Conserved domains on  [gi|119624509|gb|EAX04104|]
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ribosomal protein L7-like 1, isoform CRA_a [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_L30_N super family cl38256
Ribosomal L30 N-terminal domain; This presumed domain is found at the N-terminus of Ribosomal ...
 21-60 3.45e-05

Ribosomal L30 N-terminal domain; This presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018.


The actual alignment was detected with superfamily member pfam08079:

Pssm-ID: 462360  Cd Length: 72  Bit Score: 37.18  E-value: 3.45e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 119624509  21 VPENLLKKRKAYQALKATQAKQALLAKKEVMVGNQEKVIR 60
Cdd:pfam08079  1 VPESLLKKRKRNEKLKAERAKKALARKKANKKKRKLIFKR 40
 
Name Accession Description Interval E-value
Ribosomal_L30_N pfam08079
Ribosomal L30 N-terminal domain; This presumed domain is found at the N-terminus of Ribosomal ...
 21-60 3.45e-05

Ribosomal L30 N-terminal domain; This presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018.


Pssm-ID: 462360  Cd Length: 72  Bit Score: 37.18  E-value: 3.45e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 119624509  21 VPENLLKKRKAYQALKATQAKQALLAKKEVMVGNQEKVIR 60
Cdd:pfam08079  1 VPESLLKKRKRNEKLKAERAKKALARKKANKKKRKLIFKR 40
uL30_euk TIGR01310
60S ribosomal protein uL30, eukaryotic form; This model describes the eukaryotic 60S ...
 23-61 9.75e-04

60S ribosomal protein uL30, eukaryotic form; This model describes the eukaryotic 60S (cytosolic) ribosomal protein uL30 (previously L7) and paralogs that may or may not also be uL30. Human, Drosophila, and Arabidopsis all have both a typical L7 and an L7-related paralog. This family is designated subfamily rather than equivalog to reflect these uncharacterized paralogs. Members of this family average ~ 250 residues in length, somewhat longer than the archaeal L30P/L7E homolog (~ 155 residues) and much longer than the related bacterial/organellar form (~ 60 residues).


Pssm-ID: 273548 [Multi-domain]  Cd Length: 235  Bit Score: 35.03  E-value: 9.75e-04
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 119624509   23 ENLLKKRKAYQALKATQAKQALLAKKEVMVGNQEKVIRI 61
Cdd:TIGR01310   1 ELLLKKRKANQELAVAAAKQAKAKKKANKKKRKDYFKRA 39
 
Name Accession Description Interval E-value
Ribosomal_L30_N pfam08079
Ribosomal L30 N-terminal domain; This presumed domain is found at the N-terminus of Ribosomal ...
 21-60 3.45e-05

Ribosomal L30 N-terminal domain; This presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018.


Pssm-ID: 462360  Cd Length: 72  Bit Score: 37.18  E-value: 3.45e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 119624509  21 VPENLLKKRKAYQALKATQAKQALLAKKEVMVGNQEKVIR 60
Cdd:pfam08079  1 VPESLLKKRKRNEKLKAERAKKALARKKANKKKRKLIFKR 40
uL30_euk TIGR01310
60S ribosomal protein uL30, eukaryotic form; This model describes the eukaryotic 60S ...
 23-61 9.75e-04

60S ribosomal protein uL30, eukaryotic form; This model describes the eukaryotic 60S (cytosolic) ribosomal protein uL30 (previously L7) and paralogs that may or may not also be uL30. Human, Drosophila, and Arabidopsis all have both a typical L7 and an L7-related paralog. This family is designated subfamily rather than equivalog to reflect these uncharacterized paralogs. Members of this family average ~ 250 residues in length, somewhat longer than the archaeal L30P/L7E homolog (~ 155 residues) and much longer than the related bacterial/organellar form (~ 60 residues).


Pssm-ID: 273548 [Multi-domain]  Cd Length: 235  Bit Score: 35.03  E-value: 9.75e-04
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 119624509   23 ENLLKKRKAYQALKATQAKQALLAKKEVMVGNQEKVIRI 61
Cdd:TIGR01310   1 ELLLKKRKANQELAVAAAKQAKAKKKANKKKRKDYFKRA 39
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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