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Conserved domains on  [gi|256013068|gb|EDR41107|]
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cyclin-dependent kinases regulatory subunit [Dictyostelium discoideum AX4]

Protein Classification

cyclin-dependent kinases regulatory subunit( domain architecture ID 10471449)

cyclin-dependent kinases regulatory subunit binds to the catalytic subunit of cyclin dependent kinases and is essential for their biological function

CATH:  3.30.170.10
Gene Ontology:  GO:0016538
PubMed:  25864384
SCOP:  4001729

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CKS pfam01111
Cyclin-dependent kinase regulatory subunit;
6-72 8.57e-40

Cyclin-dependent kinase regulatory subunit;


:

Pssm-ID: 460068  Cd Length: 68  Bit Score: 125.35  E-value: 8.57e-40
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 256013068   6 HYSSKYYDDKYEYRHVILPSEISSLIPRDVLLTEDECRKLGIRQSDGWEHYANHKPEPHILLFRRPH 72
Cdd:pfam01111  2 YYSDKYEDDEYEYRHVILPKELAKKIPKNRLLTEEEWRNLGIQQSPGWEHYMIHKPEPHILLFRRPK 68
 
Name Accession Description Interval E-value
CKS pfam01111
Cyclin-dependent kinase regulatory subunit;
6-72 8.57e-40

Cyclin-dependent kinase regulatory subunit;


Pssm-ID: 460068  Cd Length: 68  Bit Score: 125.35  E-value: 8.57e-40
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 256013068   6 HYSSKYYDDKYEYRHVILPSEISSLIPRDVLLTEDECRKLGIRQSDGWEHYANHKPEPHILLFRRPH 72
Cdd:pfam01111  2 YYSDKYEDDEYEYRHVILPKELAKKIPKNRLLTEEEWRNLGIQQSPGWEHYMIHKPEPHILLFRRPK 68
CKS smart01084
Cyclin-dependent kinase regulatory subunit; Cyclin-dependent kinase regulatory subunit.
 6-72 4.49e-34

Cyclin-dependent kinase regulatory subunit; Cyclin-dependent kinase regulatory subunit.


Pssm-ID: 198152  Cd Length: 70  Bit Score: 111.28  E-value: 4.49e-34
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 256013068    6 HYSSKYYDDKYEYRHVILPSEISSLIPRDVLLTEDECRKLGIRQSDGWEHYANHKPEPHILLFRRPH 72
Cdd:smart01084  3 YYSDKYEDDEYEYRHVILPKEIAKLVPKIRLLSENEWRKLGIQQSKGWEHYMIHKPEPHILLFRRPL 69
PLN00010 PLN00010
cyclin-dependent kinases regulatory subunit; Provisional
 7-71 5.74e-32

cyclin-dependent kinases regulatory subunit; Provisional


Pssm-ID: 215027  Cd Length: 86  Bit Score: 106.18  E-value: 5.74e-32
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 256013068  7 YSSKYYDDKYEYRHVILPSEISSLIPRDVLLTEDECRKLGIRQSDGWEHYANHKPEPHILLFRRP 71
Cdd:PLN00010  6 YSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRP 70
 
Name Accession Description Interval E-value
CKS pfam01111
Cyclin-dependent kinase regulatory subunit;
6-72 8.57e-40

Cyclin-dependent kinase regulatory subunit;


Pssm-ID: 460068  Cd Length: 68  Bit Score: 125.35  E-value: 8.57e-40
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 256013068   6 HYSSKYYDDKYEYRHVILPSEISSLIPRDVLLTEDECRKLGIRQSDGWEHYANHKPEPHILLFRRPH 72
Cdd:pfam01111  2 YYSDKYEDDEYEYRHVILPKELAKKIPKNRLLTEEEWRNLGIQQSPGWEHYMIHKPEPHILLFRRPK 68
CKS smart01084
Cyclin-dependent kinase regulatory subunit; Cyclin-dependent kinase regulatory subunit.
 6-72 4.49e-34

Cyclin-dependent kinase regulatory subunit; Cyclin-dependent kinase regulatory subunit.


Pssm-ID: 198152  Cd Length: 70  Bit Score: 111.28  E-value: 4.49e-34
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 256013068    6 HYSSKYYDDKYEYRHVILPSEISSLIPRDVLLTEDECRKLGIRQSDGWEHYANHKPEPHILLFRRPH 72
Cdd:smart01084  3 YYSDKYEDDEYEYRHVILPKEIAKLVPKIRLLSENEWRKLGIQQSKGWEHYMIHKPEPHILLFRRPL 69
PLN00010 PLN00010
cyclin-dependent kinases regulatory subunit; Provisional
 7-71 5.74e-32

cyclin-dependent kinases regulatory subunit; Provisional


Pssm-ID: 215027  Cd Length: 86  Bit Score: 106.18  E-value: 5.74e-32
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 256013068  7 YSSKYYDDKYEYRHVILPSEISSLIPRDVLLTEDECRKLGIRQSDGWEHYANHKPEPHILLFRRP 71
Cdd:PLN00010  6 YSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRP 70
PTZ00453 PTZ00453
cyclin-dependent kinase; Provisional
 7-73 2.09e-30

cyclin-dependent kinase; Provisional


Pssm-ID: 185632  Cd Length: 96  Bit Score: 102.73  E-value: 2.09e-30
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 256013068  7 YSSKYYDDKYEYRHVILPSEISSLIPRDVLLTEDECRKLGIRQSDGWEHYANHKPEPHILLFRRPHS 73
Cdd:PTZ00453 30 YSDKYYDDEYEYRHVILPKDFARLVPRSRLMSESEWRQLGVQQSVGWRHYMIHKPEPHVLLFKRPKT 96
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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