|
Name |
Accession |
Description |
Interval |
E-value |
| CirA |
COG1629 |
Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism]; |
31-746 |
4.54e-94 |
|
Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism];
Pssm-ID: 441236 [Multi-domain] Cd Length: 644 Bit Score: 307.14 E-value: 4.54e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 31 LEEVVVTAQKRTESLQDVPGAVSALSADDLQESGFRDISDVSALVPSLYIlTTEQPMSTAVRIRGIGNAANvptfepAVA 110
Cdd:COG1629 1 LEEVVVTATRTDESLQDVPGSVSVISREQLEDQPATDLGDLLRRVPGVSV-TSAGGGAGQISIRGFGGGGN------RVL 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 111 LYIDG-----AFRSRSGVGLGDIVDVQAIEVLKGPQSTLYGKNASAGLIAVSSAPPSRELETMVEFTYASDNLHQLKGYV 185
Cdd:COG1629 74 VLVDGvplndPSGGDGGLSYIDPEDIERVEVLRGPSSALYGSGALGGVINIVTKKPKDGKGGEVSASYGSYGTYRASLSL 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 186 SGPlTEKMAGRLSASTTRRGNLTENlsgpdsGNLNDIALRGQLQYDFSDRWSARLIAGWLERDMNamaadmYYSAKTREM 265
Cdd:COG1629 154 SGG-NGKLAYRLSASYRDSDGYRDN------SDSDRYNLRAKLGYQLGDDTRLTLSASYSDSDQD------SPGYLTLAA 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 266 ISEAGYDISNNDPLDHVVEHNLkplivQDSSDIILNVQYGGDGYSFTSISSF--DTYDSEKYMYNVELMPINIASNFDKH 343
Cdd:COG1629 221 LRPRGAMDDGTNPYSNDTDDNT-----RDRYSLSLEYEHLGDGLKLSASAYYryDDTDLDSDFTPTPADGGTLEQTDFDN 295
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 344 agDSISQEFRIASEGS--DSLRWMTGVYYYYNDFQRgdwdqpflrmedqveeygtivakyfvaaalpVPLPLPVGSPAQV 421
Cdd:COG1629 296 --RTYGLELRLTYDLGfgGKHTLLVGLDYQRQDLDG-------------------------------SGYPLDLGSGSLP 342
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 422 PIlgvdgdEAFYRAEQQTTSYGVFAQADFDLSEKWNLSLGLRYSEEEKDGYIATYNTaangcsapfdtnpvcsvapnvDP 501
Cdd:COG1629 343 TL------TSGADDDGTTTSLALYAQDTYKLTDKLTLTAGLRYDYVSYDVDDTVTGT---------------------DS 395
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 502 YGSTQSWSATTGKTSLSYFASPDIMLYLTYSTGFKAGGFN--LESGTVPPEL--RDFDSEEVQNFEFGWKAEFWDQRARL 577
Cdd:COG1629 396 ASGSRSYSAFSPSLGLTYQLSPNLSLYASYSRGFRAPTFGelYANGTDPYSVgnPDLKPETSTNYELGLRYRLLDGRLSL 475
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 578 NGALFHTIYDG----QQNASFVGLSFVVNSADQVIMDGAEVEGLLLLSDRFTLSISATALDVVYKSYDGGqcyygrepdn 653
Cdd:COG1629 476 SLALFYSDVDNeilsVPLPNDSGFSTYYTNAGKARSYGVELELSYQLTPGLSLNASYSYTDAKFDDDTDG---------- 545
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 654 eyaQCDLSGEKLPFTPSLAGNAALRYTqplFSGDLYSRLAYRYQGSThYIPDLDPRHEEPAYGVFDARLGWR-SANVDVA 732
Cdd:COG1629 546 ---SADLDGNRLPGVPPLTANLGLTYE---FPGGWSLGLGVRYVGDR-YLDDANTQGAPGGYTLVDLGAGYRfGDNLTLS 618
|
730
....*....|....
gi 385281260 733 LWVKNLTDEQYASA 746
Cdd:COG1629 619 LGVDNLFDKKYATS 632
|
|
| ligand_gated_channel |
cd01347 |
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) ... |
52-784 |
1.68e-50 |
|
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.
Pssm-ID: 238657 [Multi-domain] Cd Length: 635 Bit Score: 187.66 E-value: 1.68e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 52 VSALSADDLQESGFRDISDVSALVPSLYILTTEQPMSTAVRIRGIGnaanvPTFepaVALYIDG---AFRSRSGVGLGDI 128
Cdd:cd01347 2 VSVITAEDIEKQPATSLADLLRRIPGVSVTRGGGGGGSTISIRGFG-----PDR---TLVLVDGlplASSNYGRGVDLNT 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 129 VD---VQAIEVLKGPQSTLYGKNASAGLIAVSSAPPSRELETMVEFTYASDNLHQLKGY---VSGPLT--EKMAGRLSAS 200
Cdd:cd01347 74 IPpelIERVEVLKGPSSALYGSGAIGGVVNIITKRPTDEFGGSVTAGYGSDNSGSSGGGgfdVSGALAddGAFGARLYGA 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 201 TTRRGNLTENLSGPDSGNLNDIALRGQLQYDFSDRWSARLiagwlerdmnamaaDMYYSAKTREMISEAGYDISNNDPLD 280
Cdd:cd01347 154 YRDGDGTIDGDGQADDSDEERYNVAGKLDWRPDDDTRLTL--------------DAGYQDQDADGPGGTLPANGTGSSLG 219
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 281 HVVEHNlkplivqdssdiilnvqyggdgysFTSISSFDTYDSEKYMYNVELMpiniasnfdkHAGDSISQEFRIASEGSD 360
Cdd:cd01347 220 GGPSSN------------------------TNGDRDWDYRDRYRKRASLGLE----------HDLNDTGWTLRANLSYSY 265
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 361 SLRWMTGVYYY-YNDFQRGDWDQPFLRMEDQVEEYGtivakyfVAAALPvpLPLPVGSPAQVPILGVDgdeaFYRAEQQT 439
Cdd:cd01347 266 TDNDGDPLILNgGNNAAGGDLGRSGYSSERDTTQLG-------FDAGLN--APFGTGPVAHTLTLGVE----YRREELDE 332
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 440 TSYGVFAQADFDLSEKWNLSLGLRYS--EEEKDGYIATYNTAangcsapfdtnpvcsvapnvdpygsTQSWSATTGKTSL 517
Cdd:cd01347 333 KQTALYAQDTIELTDDLTLTLGLRYDhyDQDSKDTIAGGTTA-------------------------KKSYSHWSPSLGL 387
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 518 SYFASPDIMLYLTYSTGFKAGGFNLESGTVPPEL------RDFDSEEVQNFEFGWKAEfWDQRARLNGALFHT-----IY 586
Cdd:cd01347 388 VYKLTDGLSLYASYSQGFRAPSLGELYGGGSHGGtaavgnPNLKPEKSKQYELGLKYD-PGDGLTLSAALFRIdikneIV 466
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 587 DGQQNASFVGLSFVVNSADQVIMdGAEVEGLLLLSDRFTLSISATALDVVYKSYDGgqcyygrepdneyaqcDLSGEKLP 666
Cdd:cd01347 467 STPTNTGLGLVTVYVNGGKARIR-GVELEASYDLTDGLGLTGSYTYTDTEVKRTDG----------------ATTGNRLP 529
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 667 FTPSLAGNAALRYTQPlfSGDLYSRLAYRYQGSTHYIPDLDPRHEE-PAYGVFDARLGWR-SANVDVALWVKNLTDEQYa 744
Cdd:cd01347 530 GIPKHTANLGLDYELP--DEGLTAGGGVRYRGKQYADTANGNNTVKvPGYTLVDLSASYQfTKNLTLRLGVNNLFDKDY- 606
|
730 740 750 760
....*....|....*....|....*....|....*....|
gi 385281260 745 saigpatfhavlDANVGSPEGSYQTFLGDPRSVGMTLRLN 784
Cdd:cd01347 607 ------------YTSLSVRGSGLYGYYGPGRTYYLSVSYK 634
|
|
| TonB-siderophor |
TIGR01783 |
TonB-dependent siderophore receptor; This subfamily model encompasses a wide variety of ... |
47-785 |
1.12e-37 |
|
TonB-dependent siderophore receptor; This subfamily model encompasses a wide variety of TonB-dependent outer membrane siderophore receptors. It has no overlap with TonB receptors known to transport other substances, but is likely incomplete due to lack of characterizations. It is likely that genuine siderophore receptors will be identified which score below the noise cutoff to this model at which point the model should be updated. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins]
Pssm-ID: 273805 [Multi-domain] Cd Length: 651 Bit Score: 149.87 E-value: 1.12e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 47 DVPGAVSALSADDLQESGFRDISDVSALVPSlyILTTEQPMST---AVRIRGIGNAANVPTFepavalYIDGAF-RSRSG 122
Cdd:TIGR01783 1 DIPQSVSVITRQELEDQQAGSLSEALQRVPG--VVVGGSGGTTqfgNITIRGFGLEVDIDNV------YLDGVPlLSRGN 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 123 VGLGDIVDVQAIEVLKGPQSTLYGKNASAGLIAVSSAPPSRELETMVEFTYASDNLHQLKGYVSGPLTE--KMAGRLSAS 200
Cdd:TIGR01783 73 LAIVDPAMVERVEVLRGPASLLYGGSAPGGVINIVTKRPQDEPKGSVTFGAGTRSGYRTAFDLGGPLGAdgTFRGRLNGA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 201 TTRRGNLTENlsgpDSGNLNDIALRGQLQYDfsDRWSARLIAGWLERDMNAMAADMYYSAKT--REMISEAGYDISNNDP 278
Cdd:TIGR01783 153 RQDGDSFYDG----AGEETRLGATATDWQLD--DRTLLRLGAYYQKERDRGGYGGLPASGGTsgRDLSSDRYLGTSSNRN 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 279 LDhvvehNLKPLIVQDSSDIILNVQYGGDGYSFTSISSFDTYDSEKYMYNvelmpiniasnfdkhagdsisqefriaseg 358
Cdd:TIGR01783 227 YD-----DREYLSYGLSLEYQFNDVWTGKQNLRYSYFDTDSNQVQASGYS------------------------------ 271
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 359 sDSLRWMTGVYYYYNDFQRGDWDQPFLRME-----------DQVEEYGTIVAKYFVAAALPVPLPLPVG-SPAQvpilgv 426
Cdd:TIGR01783 272 -SDGGLFGRSLTVVNVKQDRVQIDAGLDGEfetgpiehdllLGVSYGQRTTNRFNNTGYPSDNIYSLTAtSSAR------ 344
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 427 DGDEAFYRAEQQTTSY---GVFAQADFDLSEKWNLSLGLRYSEEEKDGYIATYNTAangcsapfdtnpvcsvapnVDPYG 503
Cdd:TIGR01783 345 TDIGDSPKDRALSSTTkalNGVALQRILLADKWTLTLGGRYDSVDVKSNNGVAGST-------------------GKRDD 405
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 504 STQSWSAttgktSLSYFASPDIMLYLTYSTGFKAGGFNLESGTVPPElrDFDSEEVQNFEFGWKAEFWDQRArLNGALFH 583
Cdd:TIGR01783 406 SQFTPSL-----GVAYKPTDDWSLYASYAESFKPGGYYPKGAGNSGD--ILEPEKGKNYELGVRYDLGDSLL-ATAALFR 477
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 584 TIYDGQQNASFVGLSFVVNSADQVImDGAEVEGLLLLSDRFTLSISATALDVVYksydggqcyygrepdNEYAQCDLSGE 663
Cdd:TIGR01783 478 ITKDNQLVQDPVNGTFSVNAGKTRN-RGVELEARGYLTPGLSLSAGYTYTDAEF---------------TEDTNGDTQGN 541
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 664 KLPFTPSLAGNAALRYTQPLFSGDLYSRLAYRYQGSthYIPDLDPRHEEPAYGVFDARLGWRSANVD---VALWVKNLTD 740
Cdd:TIGR01783 542 TVPFVPKHTASLWASYAPPVGDNGLTLGGGVQYTGK--AYVDGGNTGKVPSYTVVDLSVRYDLTKKKnltLALNVNNLFD 619
|
730 740 750 760
....*....|....*....|....*....|....*....|....*
gi 385281260 741 EQYasaigpatfhavlDANVGSPEGSYQTFLGDPRSVGMTLRLNY 785
Cdd:TIGR01783 620 RDY-------------YTSGYRWGPSAYIYPGAPRTVGLSVSYDF 651
|
|
| TonB_dep_Rec |
pfam00593 |
TonB dependent receptor; This model now only covers the conserved part of the barrel structure. |
286-784 |
1.99e-32 |
|
TonB dependent receptor; This model now only covers the conserved part of the barrel structure.
Pssm-ID: 395474 [Multi-domain] Cd Length: 475 Bit Score: 131.82 E-value: 1.99e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 286 NLKPLIVQDSSDIILNVQYGGDGYSFTSISSFDTYDSEKYMYNVELMPINIASNFDKHAGDSISQEFRIASEGSDSLRWM 365
Cdd:pfam00593 1 GWQLSLDLLGDDTLLTLGYDYSRYTDGLDLGLTLDGYGNDGGYLGDRPLYYGRDYSDTDRKRLSLGYDYDLGDGLSWLST 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 366 TGVYYYYNDFQ-----RGDWDQPFLRMEDQVEEYGTIVAKYFVAAALPVPLPLPVG-------------SPAQVPILGVD 427
Cdd:pfam00593 81 LRLGLRYSSLDgdytsNSSGLSGAGDYLSDDRLYGLYGLDGDLELSLDLSHDLLLGvelrtagldyrrlDDDAYDPYDPA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 428 GDEAFYRAEQQTTSYGVFAQADFDLSEKWNLSLGLRYSEEEKDGYiatyntaangcsapfdtnpvcsvAPNVDPYGSTQS 507
Cdd:pfam00593 161 NPSSSSYSDTTTDSYGLYLQDNIKLTDRLTLTLGLRYDHYSTDGD-----------------------DGNGGGDNFSRS 217
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 508 WSATTGKTSLSYFASPDIMLYLTYSTGFKAGGFN--------LESGTVPPELRDFDSEEVQNFEFGWKaeFWDQRARLNG 579
Cdd:pfam00593 218 YSAFSPRLGLVYKPTDNLSLYASYSRGFRAPSLGelygsgsgGGGGAVAGGNPDLKPETSDNYELGLK--YDDGRLSLSL 295
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 580 ALFHT-----IYDGQQNASFVGLSFVVNSADQVIMDGAEVEgllLLSDRFTLSISATaldvvyksydggqcYYGREPDNE 654
Cdd:pfam00593 296 ALFYIdiknlITSDPDGPGLGGTVYTYTNVGKARIRGVELE---LSGRLWGLGLSGG--------------GYTYTDADD 358
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 655 YAQCDLSGEKLPFTPSLAGNAALRYTQPLFSGDLYSRLAYRYQGSTHYiPDLDPRHEEPAYGVFDARLGWR-SANVDVAL 733
Cdd:pfam00593 359 DADADDTGNPLPNVPRHTANLGLTYDFPLGGWGARLGARYVGSGERRY-GDAANTFKTPGYTLVDLSAGYRlNKNLTLRL 437
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|.
gi 385281260 734 WVKNLTDEQYASaigpatfhavldaNVGSPEGSYQTFLGDPRSVGMTLRLN 784
Cdd:pfam00593 438 GVNNLFDKYYKR-------------YYSSGGGNLGGYPGPGRTFYLGLSYK 475
|
|
| PRK10064 |
PRK10064 |
catecholate siderophore receptor CirA; Provisional |
18-217 |
1.69e-14 |
|
catecholate siderophore receptor CirA; Provisional
Pssm-ID: 236646 [Multi-domain] Cd Length: 663 Bit Score: 77.23 E-value: 1.69e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 18 AIGLANAAIAAP-VLEEVVVTAQKRTESLQDVPGAVSALSADDLQESGFRDISDVSALVPSLYiLTTEQPMSTAVRIRGI 96
Cdd:PRK10064 16 AISCAWPVLAVDdDGETMVVTASAVEQNLKDAPASISVITQEDLQRKPVQNLKDVLKEVPGVQ-LTNEGDNRKGVSIRGL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 97 GNAanvptfepAVALYIDGA-FRSRSGVGLGDIVD--------VQAIEVLKGPQSTLYGKNASAGLIAVSSAPPSRE--- 164
Cdd:PRK10064 95 DSS--------YTLILIDGKrVNSRNAVFRHNDFDlnwipvdaIERIEVVRGPMSSLYGSDALGGVVNIITKKIGQKwhg 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 385281260 165 ---LETMVEFTYASDNLHQLKGYVSGPLTEKMAG-RLSASTTRRGNLTENLSGPDSG 217
Cdd:PRK10064 167 tvtVDTTIQEHRDRGDTYNGQFFTSGPLIDGVLGmKAYGSLAKREKDDPQNSTTTDT 223
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| CirA |
COG1629 |
Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism]; |
31-746 |
4.54e-94 |
|
Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism];
Pssm-ID: 441236 [Multi-domain] Cd Length: 644 Bit Score: 307.14 E-value: 4.54e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 31 LEEVVVTAQKRTESLQDVPGAVSALSADDLQESGFRDISDVSALVPSLYIlTTEQPMSTAVRIRGIGNAANvptfepAVA 110
Cdd:COG1629 1 LEEVVVTATRTDESLQDVPGSVSVISREQLEDQPATDLGDLLRRVPGVSV-TSAGGGAGQISIRGFGGGGN------RVL 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 111 LYIDG-----AFRSRSGVGLGDIVDVQAIEVLKGPQSTLYGKNASAGLIAVSSAPPSRELETMVEFTYASDNLHQLKGYV 185
Cdd:COG1629 74 VLVDGvplndPSGGDGGLSYIDPEDIERVEVLRGPSSALYGSGALGGVINIVTKKPKDGKGGEVSASYGSYGTYRASLSL 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 186 SGPlTEKMAGRLSASTTRRGNLTENlsgpdsGNLNDIALRGQLQYDFSDRWSARLIAGWLERDMNamaadmYYSAKTREM 265
Cdd:COG1629 154 SGG-NGKLAYRLSASYRDSDGYRDN------SDSDRYNLRAKLGYQLGDDTRLTLSASYSDSDQD------SPGYLTLAA 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 266 ISEAGYDISNNDPLDHVVEHNLkplivQDSSDIILNVQYGGDGYSFTSISSF--DTYDSEKYMYNVELMPINIASNFDKH 343
Cdd:COG1629 221 LRPRGAMDDGTNPYSNDTDDNT-----RDRYSLSLEYEHLGDGLKLSASAYYryDDTDLDSDFTPTPADGGTLEQTDFDN 295
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 344 agDSISQEFRIASEGS--DSLRWMTGVYYYYNDFQRgdwdqpflrmedqveeygtivakyfvaaalpVPLPLPVGSPAQV 421
Cdd:COG1629 296 --RTYGLELRLTYDLGfgGKHTLLVGLDYQRQDLDG-------------------------------SGYPLDLGSGSLP 342
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 422 PIlgvdgdEAFYRAEQQTTSYGVFAQADFDLSEKWNLSLGLRYSEEEKDGYIATYNTaangcsapfdtnpvcsvapnvDP 501
Cdd:COG1629 343 TL------TSGADDDGTTTSLALYAQDTYKLTDKLTLTAGLRYDYVSYDVDDTVTGT---------------------DS 395
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 502 YGSTQSWSATTGKTSLSYFASPDIMLYLTYSTGFKAGGFN--LESGTVPPEL--RDFDSEEVQNFEFGWKAEFWDQRARL 577
Cdd:COG1629 396 ASGSRSYSAFSPSLGLTYQLSPNLSLYASYSRGFRAPTFGelYANGTDPYSVgnPDLKPETSTNYELGLRYRLLDGRLSL 475
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 578 NGALFHTIYDG----QQNASFVGLSFVVNSADQVIMDGAEVEGLLLLSDRFTLSISATALDVVYKSYDGGqcyygrepdn 653
Cdd:COG1629 476 SLALFYSDVDNeilsVPLPNDSGFSTYYTNAGKARSYGVELELSYQLTPGLSLNASYSYTDAKFDDDTDG---------- 545
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 654 eyaQCDLSGEKLPFTPSLAGNAALRYTqplFSGDLYSRLAYRYQGSThYIPDLDPRHEEPAYGVFDARLGWR-SANVDVA 732
Cdd:COG1629 546 ---SADLDGNRLPGVPPLTANLGLTYE---FPGGWSLGLGVRYVGDR-YLDDANTQGAPGGYTLVDLGAGYRfGDNLTLS 618
|
730
....*....|....
gi 385281260 733 LWVKNLTDEQYASA 746
Cdd:COG1629 619 LGVDNLFDKKYATS 632
|
|
| Fiu |
COG4774 |
Outer membrane receptor for monomeric catechols [Inorganic ion transport and metabolism]; |
40-785 |
3.12e-64 |
|
Outer membrane receptor for monomeric catechols [Inorganic ion transport and metabolism];
Pssm-ID: 443806 [Multi-domain] Cd Length: 639 Bit Score: 226.30 E-value: 3.12e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 40 KRTESLQDVPGAVSALSADDLQESGFRDISDVSALVPSLYILTTEQPMSTAVRIRGIGNAANVptfepavalYIDGaFRS 119
Cdd:COG4774 1 KTDTPLLDTPQSVTVVTRELIEDQGATSLADALRNVPGVTFGAGEGGNGDSFSIRGFSASGDI---------YVDG-LRD 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 120 RSGVGLgDIVDVQAIEVLKGPQSTLYGKNASAGLIAVSSAPPSRELETMVEFTYASDNLHQLKGYVSGPLTEKMAGRLSA 199
Cdd:COG4774 71 PGQYRR-DTFNLERVEVLKGPASVLYGRGSPGGVINLVTKRPTDEPFTEVTLTYGSDGQRRATLDVNGPLGDDLAYRLNG 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 200 STtRRGNltenlSGPDSGNLNDIALRGQLQYDFSDRWSARLIAGWLERDMNAmaadmYYSAKTREMISEAGYDISNN--D 277
Cdd:COG4774 150 MY-RDSD-----SYRDGVDNDRWGIAPSLTWRLGDRTRLTLDYEYQDDDRTP-----DYGVPAVANGRPVDVDRSTFygQ 218
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 278 PLDHV----------VEHNLkplivqdSSDIILNVQYGGDGYSFTSISSFDTYDSEKYMYNVElmPINIASNFDKHAGDS 347
Cdd:COG4774 219 PDDYSdsetdsatlrLEHDF-------NDNWTLRNALRYSDYDRDYRNTYPTGGNATGTVTRS--AYRRDQDNDTLSNQT 289
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 348 -ISQEFRIaseGSDSLRWMTGVYYYYNDFQRGDWdqpflrmedqveeygtivakYFVAAALPVPLPLPVGSPaqvPILGV 426
Cdd:COG4774 290 dLTGKFDT---GGVKHTLLAGVEYSREDSDNARY--------------------SGGGTAPTVNLYNPVYGA---PVTGP 343
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 427 DGDEAFYRAEQQTtsYGVFAQADFDLSEKWNLSLGLRYseeekDGYIATYNTAANGcsapfdtnpvcsvapnvdPYGSTQ 506
Cdd:COG4774 344 TLGGADNDSRTDT--TGLYLQDTISLTDRWSLLAGLRY-----DRFDTDYTDRTTG------------------ATTSSY 398
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 507 SWSATTGKTSLSYFASPDIMLYLTYSTGFKAGGfnlESGTVPPELRDFDSEEVQNFEFGWKAEFWDQRARLNGALFHTIY 586
Cdd:COG4774 399 DDSAFSPRAGLVYKPTPNLSLYASYSTSFNPGG---GAPSLSNAGQALDPEKSRQYEVGVKWDLLDGRLSLTAALFRIEK 475
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 587 DGQQNASFVGLSFVVNSADQVImDGAEVEGLLLLSDRFTLSISATALDVVYKSYDGGqcyygrepdneyaqcDLSGEKLP 666
Cdd:COG4774 476 TNVRTTDPANPGVYVQTGEQRS-RGVELEATGELTPGWSVLAGYTYLDAEITKSANA---------------ANVGNRLP 539
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 667 FTPSLAGNAALRYTQPLfsGDLYSRLAYRYQGSTHyiPDLDPRHEEPAYGVFDARLGWR-SANVDVALWVKNLTDEQYAS 745
Cdd:COG4774 540 NVPRHSASLWTTYDLPL--PGLTLGGGVRYVGSRY--ADAANTVKLPSYTRFDAGASYRlNKNLTLRLNVNNLTDKRYYA 615
|
730 740 750 760
....*....|....*....|....*....|....*....|
gi 385281260 746 AIGpatfhavldanvgspeGSYQTFLGDPRSVGMTLRLNY 785
Cdd:COG4774 616 SAY----------------GSGYVTPGAPRTVLLSASYRF 639
|
|
| FepA |
COG4771 |
Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and ... |
10-725 |
1.51e-57 |
|
Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and metabolism];
Pssm-ID: 443803 [Multi-domain] Cd Length: 612 Bit Score: 207.40 E-value: 1.51e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 10 LALKPIILAIGLANAAIAAPVLEEVVVTAQKRTESLQDVPGAVSALSADDLQESGFRDISDVSALVPSLYILTTEQPM-S 88
Cdd:COG4771 6 LLLLLALAAQAADALAEDATELEEVVVTATRTEQSLSDAPASVSVITAEEIEKLGATDLADALRLLPGVSVTRSGGRGgS 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 89 TAVRIRGIGNaanvptfePAVALYIDGAFRSRS----GVGLGDIV--DVQAIEVLKGPQSTLYGKNASAGLIAVSSAPPS 162
Cdd:COG4771 86 SGISIRGLGG--------DRVLVLIDGVPVNNPalggGGDLSYIPpdDIERIEVIRGPASALYGSDAIGGVINIITKKPT 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 163 RELETMVEFTYASDN--LHQLKGYVSGPlTEKMAGRLSASTTRRGNLTENLSGPDSGN--LNDIALRGQLQYDFSDRWSA 238
Cdd:COG4771 158 DELEGSVSLGYGSNGngTYSGSLSLGGP-GDKLSFLLSGSYRDRDGYLDYRNGGFVGNsgYERYNLNAKLGYRLSDNHRL 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 239 RLIAGWLERDMNAMAADMYYSAKTREMISEAGYDISNNDpldhvvehnlkplivqdssdiiLNVQYGGD-GYSFTSISSF 317
Cdd:COG4771 237 SLSGGYSRQDRDGGPPTLGDTEISSDNAGDRDTTTDRGN----------------------YSLRYNGDlGDNLDLSLYY 294
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 318 DTYDSEKYMYNvelmPINIASNFDKHAGDSISQEFRIASEGSDSLRWMTGVYYYYNDFQRGDWDQPflrmedqveeygti 397
Cdd:COG4771 295 SRTDRDSTNGS----LGGSTGSFSDSDDTTYGLELDLTYPLGGNHTLTLGAEYRYDDLDSSSFLGG-------------- 356
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 398 vakyfvaaalpvplplpvgspaqvpilgvdgdeafyrAEQQTTSYGVFAQADFDLSEKWNLSLGLRYSeeekdgyiatyn 477
Cdd:COG4771 357 -------------------------------------ADASRDTYGLFAQDEWKLTDKLTLTAGLRYD------------ 387
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 478 taangcsapfdtnpvcsvapNVDPYGSTQsWSATTGKTSLSYFASPDIMLYLTYSTGFKAGGFNLESGTVPPELR----- 552
Cdd:COG4771 388 --------------------YYSTFGASN-YTAFSPRLGLRYDLSDNLTLRASYGRGFRAPSLAELYGSGTGTPGryvlg 446
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 553 --DFDSEEVQNFEFGWKAEFWDQRARLNGALFHTIYDGQQNASFVGLSFVVNS----ADQVIMDGAEVEGLLLLSDRFTL 626
Cdd:COG4771 447 npDLKPETSDNYELGLEYRLGNGGLSLSLTGFYTDIKDLIVLVPVGPGPGDVLqyenVGKARTYGLELELKYRLGKGLTL 526
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 627 SISATALDVVYKSydggqcyygrepdneyaqcDLSGEKLPFTPSLAGNAALRYTqplFSGDLYSRLAYRYQGSTHYIPDL 706
Cdd:COG4771 527 TASYTYLDSKIDD-------------------GDTGEPLPNVPPHKANLGLDYR---LPKWWLLLLLTRYYGGRYVTPPS 584
|
730 740
....*....|....*....|
gi 385281260 707 DPRHEE-PAYGVFDARLGWR 725
Cdd:COG4771 585 GRLEGYtPGYTLLDLRASYK 604
|
|
| FhuE |
COG4773 |
Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion ... |
6-785 |
3.18e-55 |
|
Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion transport and metabolism];
Pssm-ID: 443805 [Multi-domain] Cd Length: 692 Bit Score: 202.05 E-value: 3.18e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 6 TVSDLALKPI-ILAIGLANAAIAAPVLEEVVVTAQ----------------KRTESLQDVPGAVSALSADDLQESGFRDI 68
Cdd:COG4773 6 AGSGLAAAAAgALAQAAAAAAAEATTLPEVTVTGTaegtggytakssstatKLDTPLRETPQSVSVVTRQLIEDQGATTL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 69 SDVSALVPSLYILTTEQPMSTAVRIRGIGNAANvptfepavalYIDGAFRSRSGVGLGDIVDVQAIEVLKGPQSTLYGKN 148
Cdd:COG4773 86 DDALRNVPGVTVSSYDGGGRDSFSIRGFSIDNY----------LRDGLPLGGFGGGQPDTANLERVEVLKGPAGLLYGAG 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 149 ASAGLIAVSSAPPSRELETMVEFTYASDNLHQLKGYVSGPLTE--KMAGRLSASTTRRGnltenlSGPDSGNLNDIALRG 226
Cdd:COG4773 156 SPGGLVNLVTKRPTAEPQGEVSLSAGSWDTYRATADVGGPLNEdgTLRYRLNAAYEDGD------SFRDGVDNRRTLIAP 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 227 QLQYDFSDRWSARLIAGWLERDMNAMAADMYYSAktremiSEAGYDISNN--DPLDHV----------VEHNLkplivqd 294
Cdd:COG4773 230 SLDWDLTDDTTLTLGAEYQDDDSTGDRGFLPLDG------TLLDLPRSTNlgEPWDYYdtetttlfaeLEHRF------- 296
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 295 SSDIILNVQYGGDGYSFTSISSFDTYDSEKYMYNVELMPINIASNFDKHAGD-SISQEFRIaseGSDSLRWMTGVYYYYN 373
Cdd:COG4773 297 NDDWSLRANARYSDSDRDGRSAYAYGAPDAATGTLTRYASARDGDSRSDSLDaNLNGKFET---GGLEHTLLVGADYSRY 373
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 374 DFQRGDWdqpflrmedqveeygtivakyfvaAALPVPLPLPVGSPAQVPilgvdgDEAFYRAEQQTTSYGVFAQADFDLS 453
Cdd:COG4773 374 DSDSDSA------------------------TAGTINIYNPVYGNLPEP------DFDASDTDTTTRQTGLYAQDQISLT 423
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 454 EKWNLSLGLRYSEEEKDGYIATYNTAangcsapfdtnpvcsvapnvdpygSTQSWSATTGKTSLSYFASPDIMLYLTYST 533
Cdd:COG4773 424 DRLSLLLGGRYDWYETDSTNRLGGST------------------------TSYDDSAFTPRAGLVYDLTPGLSLYASYSE 479
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 534 GFKAGGFNLESGTVppelrdFDSEEVQNFEFGWKAEFWDQRARLNGALFHTIYDGQQNASFVGLSFVVnSADQVIMDGAE 613
Cdd:COG4773 480 SFEPQSGADNNGNP------LDPETGKQYEAGVKGELFDGRLNATLAVFDITQKNVATTDPDNPNFYV-QVGEVRSRGVE 552
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 614 VEGLLLLSDRFTLSISATALDVVYKSydggqcyygrepDNEYAQcdlsGEKLPFTPSLAGNAALRYTqplFSGDLYSRLA 693
Cdd:COG4773 553 LELSGELTPGLNLIAGYTYTDAKITK------------DADALE----GKRLTNVPRHTASLWTTYR---FPSGALKGLG 613
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 694 ----YRYQGSTHYipDLDPRHEEPAYGVFDARLGWR-SANVDVALWVKNLTDEQYASAIGpatfhavldanvgspeGSYQ 768
Cdd:COG4773 614 lgggVRYVGERYG--DAANTFTLPSYTLVDAGARYDlGKNWTLQLNVNNLFDKKYYASSG----------------SRGY 675
|
810
....*....|....*..
gi 385281260 769 TFLGDPRSVGMTLRLNY 785
Cdd:COG4773 676 VYYGAPRNVRLSLSYKF 692
|
|
| ligand_gated_channel |
cd01347 |
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) ... |
52-784 |
1.68e-50 |
|
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.
Pssm-ID: 238657 [Multi-domain] Cd Length: 635 Bit Score: 187.66 E-value: 1.68e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 52 VSALSADDLQESGFRDISDVSALVPSLYILTTEQPMSTAVRIRGIGnaanvPTFepaVALYIDG---AFRSRSGVGLGDI 128
Cdd:cd01347 2 VSVITAEDIEKQPATSLADLLRRIPGVSVTRGGGGGGSTISIRGFG-----PDR---TLVLVDGlplASSNYGRGVDLNT 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 129 VD---VQAIEVLKGPQSTLYGKNASAGLIAVSSAPPSRELETMVEFTYASDNLHQLKGY---VSGPLT--EKMAGRLSAS 200
Cdd:cd01347 74 IPpelIERVEVLKGPSSALYGSGAIGGVVNIITKRPTDEFGGSVTAGYGSDNSGSSGGGgfdVSGALAddGAFGARLYGA 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 201 TTRRGNLTENLSGPDSGNLNDIALRGQLQYDFSDRWSARLiagwlerdmnamaaDMYYSAKTREMISEAGYDISNNDPLD 280
Cdd:cd01347 154 YRDGDGTIDGDGQADDSDEERYNVAGKLDWRPDDDTRLTL--------------DAGYQDQDADGPGGTLPANGTGSSLG 219
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 281 HVVEHNlkplivqdssdiilnvqyggdgysFTSISSFDTYDSEKYMYNVELMpiniasnfdkHAGDSISQEFRIASEGSD 360
Cdd:cd01347 220 GGPSSN------------------------TNGDRDWDYRDRYRKRASLGLE----------HDLNDTGWTLRANLSYSY 265
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 361 SLRWMTGVYYY-YNDFQRGDWDQPFLRMEDQVEEYGtivakyfVAAALPvpLPLPVGSPAQVPILGVDgdeaFYRAEQQT 439
Cdd:cd01347 266 TDNDGDPLILNgGNNAAGGDLGRSGYSSERDTTQLG-------FDAGLN--APFGTGPVAHTLTLGVE----YRREELDE 332
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 440 TSYGVFAQADFDLSEKWNLSLGLRYS--EEEKDGYIATYNTAangcsapfdtnpvcsvapnvdpygsTQSWSATTGKTSL 517
Cdd:cd01347 333 KQTALYAQDTIELTDDLTLTLGLRYDhyDQDSKDTIAGGTTA-------------------------KKSYSHWSPSLGL 387
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 518 SYFASPDIMLYLTYSTGFKAGGFNLESGTVPPEL------RDFDSEEVQNFEFGWKAEfWDQRARLNGALFHT-----IY 586
Cdd:cd01347 388 VYKLTDGLSLYASYSQGFRAPSLGELYGGGSHGGtaavgnPNLKPEKSKQYELGLKYD-PGDGLTLSAALFRIdikneIV 466
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 587 DGQQNASFVGLSFVVNSADQVIMdGAEVEGLLLLSDRFTLSISATALDVVYKSYDGgqcyygrepdneyaqcDLSGEKLP 666
Cdd:cd01347 467 STPTNTGLGLVTVYVNGGKARIR-GVELEASYDLTDGLGLTGSYTYTDTEVKRTDG----------------ATTGNRLP 529
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 667 FTPSLAGNAALRYTQPlfSGDLYSRLAYRYQGSTHYIPDLDPRHEE-PAYGVFDARLGWR-SANVDVALWVKNLTDEQYa 744
Cdd:cd01347 530 GIPKHTANLGLDYELP--DEGLTAGGGVRYRGKQYADTANGNNTVKvPGYTLVDLSASYQfTKNLTLRLGVNNLFDKDY- 606
|
730 740 750 760
....*....|....*....|....*....|....*....|
gi 385281260 745 saigpatfhavlDANVGSPEGSYQTFLGDPRSVGMTLRLN 784
Cdd:cd01347 607 ------------YTSLSVRGSGLYGYYGPGRTYYLSVSYK 634
|
|
| FecA |
COG4772 |
Outer membrane receptor for Fe3+-dicitrate [Inorganic ion transport and metabolism]; |
15-785 |
2.48e-45 |
|
Outer membrane receptor for Fe3+-dicitrate [Inorganic ion transport and metabolism];
Pssm-ID: 443804 [Multi-domain] Cd Length: 681 Bit Score: 173.19 E-value: 2.48e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 15 IILAIGLANAAIAAPVLEEVVVTAQKRT-ESLQDVPGAVSALSADDLQESGFRDISDVSALVPSLYILtteQPMSTAVR- 92
Cdd:COG4772 7 AALLLAAAAAAEAATTLETVVVTGSRAAeARLKDVPGSVSVVDREELENQAATSLREVLRRVPGVNVQ---EEDGFGLRp 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 93 ---IRGIG--NAANVPTFE---P-AVALYIDGAFRSRSgvglgDIVDVQAIEVLKGPQSTLYGKNASAGLIAVSSAPPSR 163
Cdd:COG4772 84 nigIRGLGprRSRGITLLEdgiPiAPAPYGDPAAYYFP-----DLERMERIEVLRGAAALRYGPQTVGGAINFVTRTIPT 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 164 ELETMVEFTYASDNLHQLKGYVSGpltekMAGRLSAS---TTRRGNltenlsG--PDSG-NLNDIALRgqLQYDFSDRWS 237
Cdd:COG4772 159 AFGGELRVTGGSFGYRRTHASVGG-----TVGNFGYLveySRKRGD------GfrDNSGfDINDFNAK--LGYRLSDRQE 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 238 ARLIAGWLERDmnamaADMYYSaktremISEAGYDisnNDPldhvvehnlkplivqdssdiilnvqyggdgysFTSISSF 317
Cdd:COG4772 226 LTLKFQYYDED-----ANTPGG------LTDAQFD---ADP--------------------------------RQSYRPA 259
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 318 DTYDSEKYMYNVEL-MPINIASNFD------KHAGDS-ISQEFRIASEGSDSLRWMTGVYYYYNDFQRGDWDQPFLRMED 389
Cdd:COG4772 260 DQFDTRRTQLSLRYeHQLSDNTTLTttayynDFSRNWyIRQNTADPNTPGLGLRGNPRGYRSYGIEPRLTHRFELGGVPH 339
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 390 QVE-----EYGTIVAKYFVAAALpvplplpvgspaqvpiLGVDGDEAFYRAEQQTTSYGVFAQADFDLSEKWNLSLGLRY 464
Cdd:COG4772 340 TLEvglryHREEEDRKQYVNTYG----------------QGRSGAGLRRDRRFSADALAAYAQNRFELTGRLTLTPGLRY 403
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 465 SeeekdgYIATYNTaangcsapfDTnpvCSVAPNVDPYGSTqSWSATTGKTSLSYFASPDIMLYLTYSTGFKAGGFNlES 544
Cdd:COG4772 404 E------HIRRDRT---------DR---YSTRTGGDDSGSN-SYSEFLPGLGLLYQLTDNLQLYANVSRGFEPPTFG-DL 463
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 545 GTVPPELRDFDSEEVQNFEFGWKAEfWDQRARLNGALFHTIYD---GQQNASFVGLSFVVNsADQVIMDGAEVEG----L 617
Cdd:COG4772 464 AYGNGGNPDLKPEKSWNYELGTRGR-IGNGLSAEVALFYIDYDnelGSCSAAGGDRSTFTN-AGETRHQGLELALdydlL 541
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 618 LLLSDRFTLSISATALDVVYKSYDGGqcyygrepdneyaqcDLSGEKLPFTPSLAGNAALRYTQplfsGDLYSRLAYRYQ 697
Cdd:COG4772 542 KGGGLGLPLFAAYTYTDAEFTSDFGP---------------VFAGNRLPYVPRHQLTAGLGYEH----GGWTANLNGRYV 602
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 698 GSThYIPDLDPRHEE-----PAYGVFDARLGWR-SANVDVALWVKNLTDEQYASAIgpatfhavldaNVGSPEGSYqtfL 771
Cdd:COG4772 603 SEQ-FTDAANTVADGsfgkiPSYTVLDLSASYDfGKNLSLFAGVNNLFDKRYIASR-----------APNYAAGIR---P 667
|
810
....*....|....
gi 385281260 772 GDPRSVGMTLRLNY 785
Cdd:COG4772 668 GPPRTVYAGLRLKF 681
|
|
| TonB-siderophor |
TIGR01783 |
TonB-dependent siderophore receptor; This subfamily model encompasses a wide variety of ... |
47-785 |
1.12e-37 |
|
TonB-dependent siderophore receptor; This subfamily model encompasses a wide variety of TonB-dependent outer membrane siderophore receptors. It has no overlap with TonB receptors known to transport other substances, but is likely incomplete due to lack of characterizations. It is likely that genuine siderophore receptors will be identified which score below the noise cutoff to this model at which point the model should be updated. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins]
Pssm-ID: 273805 [Multi-domain] Cd Length: 651 Bit Score: 149.87 E-value: 1.12e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 47 DVPGAVSALSADDLQESGFRDISDVSALVPSlyILTTEQPMST---AVRIRGIGNAANVPTFepavalYIDGAF-RSRSG 122
Cdd:TIGR01783 1 DIPQSVSVITRQELEDQQAGSLSEALQRVPG--VVVGGSGGTTqfgNITIRGFGLEVDIDNV------YLDGVPlLSRGN 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 123 VGLGDIVDVQAIEVLKGPQSTLYGKNASAGLIAVSSAPPSRELETMVEFTYASDNLHQLKGYVSGPLTE--KMAGRLSAS 200
Cdd:TIGR01783 73 LAIVDPAMVERVEVLRGPASLLYGGSAPGGVINIVTKRPQDEPKGSVTFGAGTRSGYRTAFDLGGPLGAdgTFRGRLNGA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 201 TTRRGNLTENlsgpDSGNLNDIALRGQLQYDfsDRWSARLIAGWLERDMNAMAADMYYSAKT--REMISEAGYDISNNDP 278
Cdd:TIGR01783 153 RQDGDSFYDG----AGEETRLGATATDWQLD--DRTLLRLGAYYQKERDRGGYGGLPASGGTsgRDLSSDRYLGTSSNRN 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 279 LDhvvehNLKPLIVQDSSDIILNVQYGGDGYSFTSISSFDTYDSEKYMYNvelmpiniasnfdkhagdsisqefriaseg 358
Cdd:TIGR01783 227 YD-----DREYLSYGLSLEYQFNDVWTGKQNLRYSYFDTDSNQVQASGYS------------------------------ 271
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 359 sDSLRWMTGVYYYYNDFQRGDWDQPFLRME-----------DQVEEYGTIVAKYFVAAALPVPLPLPVG-SPAQvpilgv 426
Cdd:TIGR01783 272 -SDGGLFGRSLTVVNVKQDRVQIDAGLDGEfetgpiehdllLGVSYGQRTTNRFNNTGYPSDNIYSLTAtSSAR------ 344
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 427 DGDEAFYRAEQQTTSY---GVFAQADFDLSEKWNLSLGLRYSEEEKDGYIATYNTAangcsapfdtnpvcsvapnVDPYG 503
Cdd:TIGR01783 345 TDIGDSPKDRALSSTTkalNGVALQRILLADKWTLTLGGRYDSVDVKSNNGVAGST-------------------GKRDD 405
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 504 STQSWSAttgktSLSYFASPDIMLYLTYSTGFKAGGFNLESGTVPPElrDFDSEEVQNFEFGWKAEFWDQRArLNGALFH 583
Cdd:TIGR01783 406 SQFTPSL-----GVAYKPTDDWSLYASYAESFKPGGYYPKGAGNSGD--ILEPEKGKNYELGVRYDLGDSLL-ATAALFR 477
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 584 TIYDGQQNASFVGLSFVVNSADQVImDGAEVEGLLLLSDRFTLSISATALDVVYksydggqcyygrepdNEYAQCDLSGE 663
Cdd:TIGR01783 478 ITKDNQLVQDPVNGTFSVNAGKTRN-RGVELEARGYLTPGLSLSAGYTYTDAEF---------------TEDTNGDTQGN 541
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 664 KLPFTPSLAGNAALRYTQPLFSGDLYSRLAYRYQGSthYIPDLDPRHEEPAYGVFDARLGWRSANVD---VALWVKNLTD 740
Cdd:TIGR01783 542 TVPFVPKHTASLWASYAPPVGDNGLTLGGGVQYTGK--AYVDGGNTGKVPSYTVVDLSVRYDLTKKKnltLALNVNNLFD 619
|
730 740 750 760
....*....|....*....|....*....|....*....|....*
gi 385281260 741 EQYasaigpatfhavlDANVGSPEGSYQTFLGDPRSVGMTLRLNY 785
Cdd:TIGR01783 620 RDY-------------YTSGYRWGPSAYIYPGAPRTVGLSVSYDF 651
|
|
| TonB_dep_Rec |
pfam00593 |
TonB dependent receptor; This model now only covers the conserved part of the barrel structure. |
286-784 |
1.99e-32 |
|
TonB dependent receptor; This model now only covers the conserved part of the barrel structure.
Pssm-ID: 395474 [Multi-domain] Cd Length: 475 Bit Score: 131.82 E-value: 1.99e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 286 NLKPLIVQDSSDIILNVQYGGDGYSFTSISSFDTYDSEKYMYNVELMPINIASNFDKHAGDSISQEFRIASEGSDSLRWM 365
Cdd:pfam00593 1 GWQLSLDLLGDDTLLTLGYDYSRYTDGLDLGLTLDGYGNDGGYLGDRPLYYGRDYSDTDRKRLSLGYDYDLGDGLSWLST 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 366 TGVYYYYNDFQ-----RGDWDQPFLRMEDQVEEYGTIVAKYFVAAALPVPLPLPVG-------------SPAQVPILGVD 427
Cdd:pfam00593 81 LRLGLRYSSLDgdytsNSSGLSGAGDYLSDDRLYGLYGLDGDLELSLDLSHDLLLGvelrtagldyrrlDDDAYDPYDPA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 428 GDEAFYRAEQQTTSYGVFAQADFDLSEKWNLSLGLRYSEEEKDGYiatyntaangcsapfdtnpvcsvAPNVDPYGSTQS 507
Cdd:pfam00593 161 NPSSSSYSDTTTDSYGLYLQDNIKLTDRLTLTLGLRYDHYSTDGD-----------------------DGNGGGDNFSRS 217
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 508 WSATTGKTSLSYFASPDIMLYLTYSTGFKAGGFN--------LESGTVPPELRDFDSEEVQNFEFGWKaeFWDQRARLNG 579
Cdd:pfam00593 218 YSAFSPRLGLVYKPTDNLSLYASYSRGFRAPSLGelygsgsgGGGGAVAGGNPDLKPETSDNYELGLK--YDDGRLSLSL 295
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 580 ALFHT-----IYDGQQNASFVGLSFVVNSADQVIMDGAEVEgllLLSDRFTLSISATaldvvyksydggqcYYGREPDNE 654
Cdd:pfam00593 296 ALFYIdiknlITSDPDGPGLGGTVYTYTNVGKARIRGVELE---LSGRLWGLGLSGG--------------GYTYTDADD 358
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 655 YAQCDLSGEKLPFTPSLAGNAALRYTQPLFSGDLYSRLAYRYQGSTHYiPDLDPRHEEPAYGVFDARLGWR-SANVDVAL 733
Cdd:pfam00593 359 DADADDTGNPLPNVPRHTANLGLTYDFPLGGWGARLGARYVGSGERRY-GDAANTFKTPGYTLVDLSAGYRlNKNLTLRL 437
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|.
gi 385281260 734 WVKNLTDEQYASaigpatfhavldaNVGSPEGSYQTFLGDPRSVGMTLRLN 784
Cdd:pfam00593 438 GVNNLFDKYYKR-------------YYSSGGGNLGGYPGPGRTFYLGLSYK 475
|
|
| BtuB |
COG4206 |
Outer membrane cobalamin receptor protein BtuB [Coenzyme transport and metabolism]; |
34-250 |
1.39e-26 |
|
Outer membrane cobalamin receptor protein BtuB [Coenzyme transport and metabolism];
Pssm-ID: 443355 [Multi-domain] Cd Length: 276 Bit Score: 109.96 E-value: 1.39e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 34 VVVTAQKRTESLQDVPGAVSALSADDLQESGFRDISDVSALVPSLYILTTEQP-MSTAVRIRGIGNAAnvptfepaVALY 112
Cdd:COG4206 1 VVVTATRLEQSKSDLTGSVTVIDAEELERSGATSLADALRRVPGVQVSSSGGPgSAASISIRGLGSNQ--------TLVL 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 113 IDG---AFRSRSGVGLGDI--VDVQAIEVLKGPQSTLYGKNASAGLIAVSSAPPSRELETMVEFTYASDNLHQLKGYVSG 187
Cdd:COG4206 73 IDGvplNDPSLGGVDLSLIppDDIERIEVLKGAASALYGSDAIGGVINITTKKGKKGFKGSVSASYGSFGTRRLSASLSG 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 385281260 188 PlTEKMAGRLSASTTRRGNLT-ENLSGPDSGNLNDIALRGQLQYDFSDRWSARLIAGWLERDMN 250
Cdd:COG4206 153 G-AGKFSYSLSASYRRSDGYRyNDPDLRNNDGYENTSLNARLGYKLGDNGSLSLSGGYSDSERG 215
|
|
| TonB-hemin |
TIGR01785 |
TonB-dependent heme/hemoglobin receptor family protein; This model represents the ... |
31-748 |
6.60e-23 |
|
TonB-dependent heme/hemoglobin receptor family protein; This model represents the TonB-dependent outer membrane heme/hemoglobin receptor/transporter found in bacteria which live in contact with animals (which contain hemoglobin or other heme-bearing globins) or legumes (which contain leghemoglobin). Some species having hits to this model such as Nostoc, Caulobacter and Chlorobium do not have an obvious source of hemoglobin-like proteins in their biological niche and so the possibility exists that they act on some other substance. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins]
Pssm-ID: 273807 [Multi-domain] Cd Length: 665 Bit Score: 104.40 E-value: 6.60e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 31 LEEVVVTAQKRTESLQDVPGAVSALSADDLQESGFRDISDVSALVPSLYILTTEQPMSTAVRIRGIGnaanvptfEPAVA 110
Cdd:TIGR01785 1 LDTVTVTATRTRQVLSEAPASVSVISGEQIESKQANNLADALNTVPGVDVTGGGRPPGQSINIRGLQ--------DNRVL 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 111 LYIDGAfrsRSGVGLG---------DIVDVQAIEVLKGPQSTLYGKNASAGLIA---VSSA---PPSRELETMVEFTYAS 175
Cdd:TIGR01785 73 VVVDGA---RQNYQRGgahngslfvDPELLKRIEIVKGPSSSLYGSGALGGVVAfrtKDAAdllRPGQLFGGLAKLSYGS 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 176 -DNLHQLKGYVSGPLTEKMAGRLSASTTRRGNLtenlsgpDSGNLNDIALRGQLQYDF--SDRWsarliagWLERDMNAM 252
Cdd:TIGR01785 150 nNNSFGGSVAVAGRLDDNLDALVAATYRDGGNY-------RNGNKEEATNSAYVQKNLlaKLGW-------QLDDAQRLE 215
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 253 AADMYYSAKTREMiseagydiSNNDPLDHVVEHNLKPLIVQDSSDIILNVQY-----GGDGYSFT-SISSFDTY------ 320
Cdd:TIGR01785 216 FSYFTTEGSLDEA--------QNSGPGTEYVLGSSSTLLASSTRDRSATLTYnwtpeDNPWLDATaSLYYNRTEndndrs 287
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 321 -----DSEKYMYNVELMPINIASNFDkhagdsisqefrIASegsdslrWMTGVYyyyndfqRGDWdqpflrMEDQVEEYG 395
Cdd:TIGR01785 288 argvgREEGYQYTTYGATLQNTSRFD------------VAS-------WSTLTY-------GVDW------MKDKRRTES 335
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 396 tivAKYFVAAALPVPLPlpvgspaqvpilgvDGDEAFyraeqqttsYGVFAQADFDL-SEKWNLSLGLRYseeekDGYia 474
Cdd:TIGR01785 336 ---FDPNSVTTIVPNPP--------------SAKEYF---------FGLFLQDNIPLlDDRLTLSAGLRY-----DHY-- 382
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 475 tyntaangcsapfDTNPvcsvAPNVDPYGSTQSWSATTGKTSLSYFASPDIMLYLTYSTGFKAGGFN--LESGTVP---- 548
Cdd:TIGR01785 383 -------------KLSP----KTTADTEAVDRSYSRWSPSLGLSYKPVDWLTLYASYSQGFRAPSIDelYGTGDHPgtpg 445
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 549 -------PELRdfdSEEVQNFEFGWKAEFW-----DQRARLNGALFHTIYD----------GQQNASFVGLSFVVNsADQ 606
Cdd:TIGR01785 446 gytfapnPNLK---PETSKTWELGANLSFDnllldNDQLQFKVAYFYNDVKdfidltigvtDNVTAGMNNITQYVN-IDG 521
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 607 VIMDGAEVEgLLLLSDRFTLSISATALDvvyksydggqcyyGREPDneyaqcdlSGEKLPFTPSLAGNAALRYtqPLFSG 686
Cdd:TIGR01785 522 ARIRGIEAS-ASYDAGLWATGLSYGYTI-------------GKDQN--------TNQWLSNIPPLKLVVTVGY--RFPDR 577
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 687 DLYSRL-AYRYQGSTHYIPDLD----PRHEEPAYGVFDARLGWRSA---NVDVALWVKNLTDEQYASAIG 748
Cdd:TIGR01785 578 RLDLGAkAAYYERQSESPTTEDvaanGLLTTPGYTVVDLYATYQPNavkGLTVRFGVNNLTDRKYTPAQS 647
|
|
| Plug |
pfam07715 |
TonB-dependent Receptor Plug Domain; The Plug domain has been shown to be an independently ... |
44-152 |
7.96e-18 |
|
TonB-dependent Receptor Plug Domain; The Plug domain has been shown to be an independently folding subunit of the TonB-dependent receptors. It acts as the channel gate, blocking the pore until the channel is bound by ligand. At this point it under goes conformational changes opens the channel.
Pssm-ID: 462243 [Multi-domain] Cd Length: 107 Bit Score: 79.62 E-value: 7.96e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 44 SLQDVPGAVSALSADDLQESGFRDISDVSALVPSLYILTTEQPMSTAVRIRGIGnaanvptfEPAVALYIDGAFRSRSGV 123
Cdd:pfam07715 1 DLRDTPGSVSVVTAEDIEDQGATNLADALRGVPGVSVSSGGGGGGSSISIRGFG--------SNRVLVLVDGVPLNSGGG 72
|
90 100 110
....*....|....*....|....*....|....
gi 385281260 124 GLGDIV-----DVQAIEVLKGPQSTLYGKNASAG 152
Cdd:pfam07715 73 GSVDLNsidpeDIERVEVLKGPASALYGSGAIGG 106
|
|
| PRK10064 |
PRK10064 |
catecholate siderophore receptor CirA; Provisional |
18-217 |
1.69e-14 |
|
catecholate siderophore receptor CirA; Provisional
Pssm-ID: 236646 [Multi-domain] Cd Length: 663 Bit Score: 77.23 E-value: 1.69e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 18 AIGLANAAIAAP-VLEEVVVTAQKRTESLQDVPGAVSALSADDLQESGFRDISDVSALVPSLYiLTTEQPMSTAVRIRGI 96
Cdd:PRK10064 16 AISCAWPVLAVDdDGETMVVTASAVEQNLKDAPASISVITQEDLQRKPVQNLKDVLKEVPGVQ-LTNEGDNRKGVSIRGL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 97 GNAanvptfepAVALYIDGA-FRSRSGVGLGDIVD--------VQAIEVLKGPQSTLYGKNASAGLIAVSSAPPSRE--- 164
Cdd:PRK10064 95 DSS--------YTLILIDGKrVNSRNAVFRHNDFDlnwipvdaIERIEVVRGPMSSLYGSDALGGVVNIITKKIGQKwhg 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 385281260 165 ---LETMVEFTYASDNLHQLKGYVSGPLTEKMAG-RLSASTTRRGNLTENLSGPDSG 217
Cdd:PRK10064 167 tvtVDTTIQEHRDRGDTYNGQFFTSGPLIDGVLGmKAYGSLAKREKDDPQNSTTTDT 223
|
|
| PRK13483 |
PRK13483 |
ligand-gated channel protein; |
11-220 |
1.87e-14 |
|
ligand-gated channel protein;
Pssm-ID: 184080 [Multi-domain] Cd Length: 660 Bit Score: 77.12 E-value: 1.87e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 11 ALKPIILAIGLANAAIAAPV---------LEEVVVTAQKRTESLQDVPGAVSALSADDLQESGFRDISDVSALVPSlyIL 81
Cdd:PRK13483 4 YLAQVISALCLLPAVFVTHAlaqaapdktMETVVVTASGYEQQIRDAPASISVITREDLENRFYRDLTDALLDVPG--VV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 82 TTEQPMSTAVRIRGIGNAANVptfepavaLYIDGAFRSR---------SGVGLGDIVDVQA---IEVLKGPQSTLYGKNA 149
Cdd:PRK13483 82 VTGGGDRTDISLRGMGSQYTL--------ILVDGKRQSSretrpnsdgPGVEQAWTPPLAAierIEVIRGPMSSLYGSDA 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 150 SAGLIAVSSAPPSRE------LETMVEFTYASDNLHQLKGYVSGPLTEKMAG-RLSASTTRRG--NLTENLSGPDSGNLN 220
Cdd:PRK13483 154 IGGVINIITRKVPNEwqgevrLDTTLQENSDSGNVYQANFFVNGPLIKDLLGlQLYGQYTQREedDIEGGYRDKDARSLT 233
|
|
| PRK09840 |
PRK09840 |
catecholate siderophore receptor Fiu; Provisional |
435-780 |
5.06e-13 |
|
catecholate siderophore receptor Fiu; Provisional
Pssm-ID: 182105 [Multi-domain] Cd Length: 761 Bit Score: 72.92 E-value: 5.06e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 435 AEQQTTSYGVFAQADFDLSEKWNLSLGLRYseeekDGYIATYNTA----ANGCSAPFDTNPVCSVAPnVDPYGSTQSWSA 510
Cdd:PRK09840 440 ANGQTDTFAIYAFDTLQLTRDWELNGGIRL-----DNYHTEYDSAtacgGSGRGAITCPAGVAKGSP-VTTVDTAKSGNL 513
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 511 TTGKTSLSYFASPDIMLYLTYSTGFKA-GGFNL---ESGTVPPELR-DFDSEEVQNFEFGWKAEFWDQRARLNGALFHTI 585
Cdd:PRK09840 514 VNWKAGALYKLTENGNVYINYAVSQQPpGGSNFalaQSGSGNSANRtDFKPQKANTSEIGTKWQVLDKRLLLTAALFRTD 593
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 586 ydgqqnasfVGLSFVVNSADQVIMDGAE-VEGLLL-----LSDRFTLSISATALDVVYKSydggqcyygrepDNEYAQCD 659
Cdd:PRK09840 594 ---------IENEVEQNDDGTYSQYGKKrVEGYELsvagnITPAWQVIAGYTQQKATVKN------------GKDVAQDG 652
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 660 LSGekLPFTPSLAGNAALRYTQPlfsGDLYSRLAYRYQGSTHYIPDL---DPRHEEpAYGVFDARLGWR-SANVDVALWV 735
Cdd:PRK09840 653 SSS--LPYTPEHAFTLWSQYQAT---DDLSVGGGARYIGSMHRGSDGavgTPAFTE-GYWVADAKLGYRvNRNLDLQLNV 726
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 385281260 736 KNLTDEQYASAIGpatfhavldanvgspEGSYQTFLGDPRSVGMT 780
Cdd:PRK09840 727 YNLFDTDYVASIN---------------KSGYRYHPGEPRTFLLT 756
|
|
| PRK13513 |
PRK13513 |
ligand-gated channel protein; |
14-205 |
1.36e-11 |
|
ligand-gated channel protein;
Pssm-ID: 184104 [Multi-domain] Cd Length: 659 Bit Score: 67.87 E-value: 1.36e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 14 PIILAIGLANAAIAAPVLEE------VVVTAQKRTESLQDVPGAVSALSADDLQESGFRDISDVSALVPSlyILTTEQPM 87
Cdd:PRK13513 12 ALVIAAAISSQAYAAEKTNTatptdtMVVTASGFQQRIQDAPASISVVTREQLENKAYRDVTDALKDVPG--VVVTGGGS 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 88 STAVRIRGIGNAANVptfepavaLYIDG---AFRSR------SGVGLGDIVDVQA---IEVLKGPQSTLYGKNASAGLIA 155
Cdd:PRK13513 90 TSDISIRGMAAKYTL--------ILVDGkrvDTRSTrpnsdgSGIEQGWLPPLAAierIEVVRGPMSSLYGSDAMGGVIN 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 385281260 156 VSSAPPSRE------LETMVEFTYASDNLHQLKGYVSGPLTEKMAG-RLSASTTRRG 205
Cdd:PRK13513 162 IITRKVQKEwhgslrADATLQEDSKSGDIFQTNAYASGPLIDGLLGlKVSGLLSHRS 218
|
|
| PRK13484 |
PRK13484 |
IreA family TonB-dependent siderophore receptor; |
32-195 |
4.69e-07 |
|
IreA family TonB-dependent siderophore receptor;
Pssm-ID: 139605 [Multi-domain] Cd Length: 682 Bit Score: 53.47 E-value: 4.69e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 32 EEVVVTAQKRTESLQDVPGAVSALSADDLQESGFRDISDVSALVPSLYIL-TTEQPmstAVRIRGIGNAANVptfepava 110
Cdd:PRK13484 31 DTLVVTASGFTQQLRNAPASVSVITSEQLQKKPVSDLVDAVKDVEGISITgGNEKP---DISIRGLSGDYTL-------- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 111 LYIDGAFRS--------RSGVGLGDIVDVQA---IEVLKGPQSTLYGKNASAGLIAVSSAPPSREL--------ETMVEF 171
Cdd:PRK13484 100 ILVDGRRQSgresrpngSGGFEAGFIPPVEAierIEVIRGPMSSLYGSDAIGGVINIITKPVNNQTwdgvlglgGIIQEH 179
|
170 180
....*....|....*....|....
gi 385281260 172 TYASDNLHQlKGYVSGPLTEKMAG 195
Cdd:PRK13484 180 GKFGNSTTN-DFYLSGPLIKDKLG 202
|
|
| PRK10044 |
PRK10044 |
ferrichrome outer membrane transporter; Provisional |
37-180 |
5.89e-05 |
|
ferrichrome outer membrane transporter; Provisional
Pssm-ID: 236643 [Multi-domain] Cd Length: 727 Bit Score: 46.68 E-value: 5.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 37 TAQKRTESLQDVPGAVSALSADDLQESGFRDISDVSALVPSlyILTTEQPMST---AVRIRGIGnAANVPTFEPAVALYI 113
Cdd:PRK10044 68 TGTKTDTPIEKTPQSISVVTAEEMALHQPKSVKEALSYTPG--VSVGTRGASNtydHLIIRGFA-ASGQSQNNYLDGLKL 144
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 385281260 114 DGAFRSRSGVglgDIVDVQAIEVLKGPQSTLYGKNASAGLIAVSSAPPSRELETMVEFTYASDNLHQ 180
Cdd:PRK10044 145 QGNFYNDAVI---DPYMLERAELMRGPVSVLYGKSNPGGLLNMVSKRPTTEPLKEVQFKMGTDNLFQ 208
|
|
| PRK13486 |
PRK13486 |
TonB-dependent receptor; |
17-204 |
1.05e-04 |
|
TonB-dependent receptor;
Pssm-ID: 139606 [Multi-domain] Cd Length: 696 Bit Score: 45.78 E-value: 1.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 17 LAIGLANAAIAAPVLeevVVTAQKRTESLQDVPGAVSALSADDLQESGFRDISDVSALVPSLYILT-TEQPMSTAVRIRG 95
Cdd:PRK13486 14 LGFSASSIAAAEDVM---IVSASGYEKKLTNAAASVSVISQEELQSSQYHDLAEALRSVEGVDVESgTGKTGGLEISIRG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 96 IgnaanvptfePA--VALYIDG------------AFRSRSGVGLGDIVDVQAIEVLKGPQSTLYGKNASAGLIAVSSAPP 161
Cdd:PRK13486 91 M----------PAsyTLILIDGvrqggssdvtpnGFSAMNTGFMPPLAAIERIEVIRGPMSTLYGSDAMGGVVNIITRKN 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 385281260 162 SRELETMV------EFTYASDNLHQLKGYVSGPLTE-KMAGRLSASTTRR 204
Cdd:PRK13486 161 ADKWLSSVnaglnlQESNKWGNSSQFNFWSSGPLVDdSVSLQVRGSTQQR 210
|
|
| PRK13524 |
PRK13524 |
FepA family TonB-dependent siderophore receptor; |
15-220 |
2.86e-04 |
|
FepA family TonB-dependent siderophore receptor;
Pssm-ID: 237410 [Multi-domain] Cd Length: 744 Bit Score: 44.25 E-value: 2.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 15 IILAIGLANAAIAA------------PVLEEVVVTAQKrtESLQdVPGaVSALSADDLQE-SGFRDISDVSALVPSLYiL 81
Cdd:PRK13524 10 LLVNLGIYGVAQAAeaedaktddtpaSHEDTIVVTAAE--QNLQ-APG-VSTITAEDIRKrPPANDVSEIIRTMPGVN-L 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 82 TTEqpmSTA--------VRIRGIGnaanvPtfEPAVALyIDGA-FRSRSGVGLG----------------DIVDvqAIEV 136
Cdd:PRK13524 85 TGN---STSgqrgnnrqIDIRGMG-----P--ENTLIL-IDGKpVSSRNSVRYGwrgerdtrgdtnwvppEMIE--RIEV 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385281260 137 LKGPQSTLYGKNASAGLIAVSSAPPSRELETMVEfTYASDNLHQLKG-------YVSGPLTEKMAGRLSasttrrGNLte 209
Cdd:PRK13524 152 LRGPAAARYGNGAAGGVVNIITKKPTGEWHGSWN-TYFNAPEHKAEGatkrtnfSLSGPLGDELSFRLY------GNL-- 222
|
250
....*....|.
gi 385281260 210 NLSGPDSGNLN 220
Cdd:PRK13524 223 NKTQADAWDIN 233
|
|
| PRK14049 |
PRK14049 |
ferrioxamine B receptor precursor protein; Provisional |
131-191 |
1.09e-03 |
|
ferrioxamine B receptor precursor protein; Provisional
Pssm-ID: 172541 [Multi-domain] Cd Length: 726 Bit Score: 42.58 E-value: 1.09e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 385281260 131 VQAIEVLKGPQSTLYGKNASAGLIAVSSAPPSRELETMVEFTYASDNLHQLKGYVSGPLTE 191
Cdd:PRK14049 157 LEGVSILRGPSSALYGASGAGGLFNLITKRPTEEPLREVQVQYGTNNRYQGQFDFSGPVNE 217
|
|
| |
