|
Name |
Accession |
Description |
Interval |
E-value |
| SCC2 |
cd23958 |
Sister chromatid cohesion protein 2 and homologs; This family includes Sister chromatid ... |
800-2007 |
0e+00 |
|
Sister chromatid cohesion protein 2 and homologs; This family includes Sister chromatid cohesion protein 2 (Scc2) and its homolog (Scc2 homolog, also called Nipped-B-like protein or NIPBL). Scc2/NIPBL and Scc4 form a complex that is responsible for loading the cohesin protein onto sister chromatids during mitosis and meiosis. Cohesin is a ring-shaped protein complex that encircles the sister chromatids and helps to hold them together until they are ready to be separated during cell division. In addition to its role in chromosome segregation, cohesin also plays important roles in other cellular processes such as transcription, chromosome condensation, and DNA repair.
Pssm-ID: 467937 [Multi-domain] Cd Length: 1197 Bit Score: 1379.70 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 800 KLVKVLGILEKNIQDGAKLSTHMNHDNEaEDEERLWRDLIMERVTKSADSCLTalnIMTSLRMPKAVYIEDVIERVLQFT 879
Cdd:cd23958 1 KLVRLLTILERNIRDGESLDLDLDESQE-DDEERLWLLERIDRALEAADASLT---ILTSPGLPKQLYSEDLIERVVDFL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 880 KFHLQNTLYPQYDPVYRVDPHGGGMlssKAKRAKCSTHKQRVIVMLYNKVCDIVSNISELLEIQLLTDTTILQVSSMGIT 959
Cdd:cd23958 77 KFQLENTIYPAYDPVYRSDSSAKAG---KKKRAKASSKKKKSVSTLLNKLCELLSLLAELLSLQSLTDSVILQLVYLAIS 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 960 PFFVE----NVSELQLCAIKLVTAVFSRYEKHRQLILEEIFTSLARLPTSKRSLRNFRLNSSDvdgepmYIQMVTALVLQ 1035
Cdd:cd23958 154 PFFVEnavsNVDELQLSALKLLTSIFSRYPDQRQFIIEEILSSLAKLPSSKRNLRQFRLNDGK------SIQMVTALLLQ 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 1036 LIQCVVHLPTEKDNTDEEY-------EKKVDQDVLITNSYETAMRTAQNFLSVFLKKCGSK--QGEEDYRPLFENFVQDL 1106
Cdd:cd23958 228 LVQSSVKLPNLEKESSRDKsleedsdELLEDEESALAKSYESAVRIASYFLSFLLQKCTKKkkEKDTDYRPLFENFVQDL 307
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 1107 LSTVNKPEWPAAELLLSLLGRLLVHQFSNKQTEMALRVASLDYLGTVAARLRKDAVTskmdqrsidrilreasgndetQQ 1186
Cdd:cd23958 308 LTVLNLPEWPAAELLLSLLGRLLVSIFSNKKTDANARVMALDLLGLIAARLRKDALA---------------------EE 366
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 1187 LQKALLDYLDENVETDPSLLFARKFYIAQWFRDTTTETEKAMKsqnqkeddsaegahhAKDIETTGEIMQRAEKRKQFLR 1266
Cdd:cd23958 367 LQKALLDYLAENSSSDPSLESARGFYLAQWLRDLSNELEKAEK---------------AAEEEDTILKLELSELRKKFLD 431
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 1267 SIikttpsqFGTLKMNSDTVDYEDACLVVRYLASMRPFAQSFDIYLTQILRVLGESAIAVRTKAMKCLSEVVAVDPSILA 1346
Cdd:cd23958 432 SK-------ILSKEEEASPLSREDAKLLYRALASQRPLSQSFDPILKQLLSSLDEPAVTLRTKALKALSLVVEADPSILG 504
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 1347 RSDMQRGVHGRLMDNSTSVREAAVELLGRFVLSRPQLTEQYYDMLIERILDTGISVRKRVIKILRDICLEQPTFNKITEM 1426
Cdd:cd23958 505 DPDVQRAVEGRLLDSSASVREAAVELVGKYISSRPDLAEQYYEMIAERILDTGVSVRKRVIKILRDIYLRTPDFEIKVDI 584
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 1427 CVKMIRRVND-EEGIKKLVNETFQKLWFTPTPNH-----DKETMTRKIINITDVVSACRDsGYDWFEQLLQNLLKTEEDA 1500
Cdd:cd23958 585 CVRLLRRINDeEESIKDLARKTFQELWFTPFPESsspaqDKESLAERVLLIVDVVAACRK-GLDLLEQLLKRLLKSKEDK 663
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 1501 SYKPTRKACAQLVDNLVEHILKYEEESLTDCESkgvnsnRLVACITTLYLFSKIR-AQLMVKHAMTMQPYLTTKCNNQND 1579
Cdd:cd23958 664 EDKSVRKACKQLVDCLVELILELEEDDDESSES------DLVACLSTLHLFAKADpKLLLVEHAETLQPYLKSKCSTRED 737
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 1580 FMVICNVAKILELVVPLMDHPSETFLTTIEEDLMKLIIKYGMTVVQHCVSCLGAIVNKVTHNYKFVWACFNRYYGALNKL 1659
Cdd:cd23958 738 QQVLRYVLRILRSVLPLLSHPSESFLEELEEDLLKLLLKHSVTVLQEAIACLCAVVNKLTKNYERLRKALQSCLKLLRKY 817
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 1660 KTQHQEDSTSTVlvsNKPALLRSLFTVGALCRHFDFDREEFKGNN-----KVVIKDKVLELLLYFTKNE-DEEVQTKAII 1733
Cdd:cd23958 818 KRQANLDPSSLK---EDPKLLRLLYILGLLARYCDFDSERDDFEKaplktKESVKELVFDLLLFFTKPPiDEDVRKKALQ 894
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 1734 GLGFLFIQHPGLMFVPDVKTLYNGLLSDrkKSVNLKIQVLKNLQTYLQEEDSRMQEADREWKKLSKQ-----EDLKEMGD 1808
Cdd:cd23958 895 ALGFLCIAHPKLFLSPEVLKLLDEILAS--GSLKLKLQVLRNLQEFLQAEEKRMEAADAEWKKNSKAadvkvLDGKEMGD 972
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 1809 ISSGMSSSIMQLYLKQVLEAFFHTQSSVRHFALNVIALTLSQGLIHPVQCVPYLIAMGTDPEPTMRNKADQQLVEIDKKY 1888
Cdd:cd23958 973 ADSGVASSIMQRYLKDILELCLSSDSQVRLAALKVLELILRQGLVHPIQCVPTLIALETDPNPAIRKLALRLLKELHEKY 1052
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 1889 TGFIHMKAVAGMKMSYQVQQAImgSRDTIIRGFRQDESNSALCSHLFTMVRGNRQHRRAFLISLLNLFDDS------AKT 1962
Cdd:cd23958 1053 ESLVESKYLEGVRLAFQYQKRL--AGDTRGRGFRTDSPPTALLGRLYSLLRGNRKSRRKFLKSLLKLFDFDlkkssdSPS 1130
|
1210 1220 1230 1240
....*....|....*....|....*....|....*....|....*
gi 1878401830 1963 EVNMLLFIADNLACFPFQTQEEPLFIMHHIDITLSVSGSNLLQSF 2007
Cdd:cd23958 1131 DLDFLLFLAENLAFLPYQTQDEPLFVIHTIDRILSVTGSSLLQAI 1175
|
|
| Nucleoporin_N |
pfam08801 |
Nup133 N terminal like; Nup133 is a nucleoporin that is crucial for nuclear pore complex (NPC) ... |
2420-2856 |
3.23e-108 |
|
Nup133 N terminal like; Nup133 is a nucleoporin that is crucial for nuclear pore complex (NPC) biogenesis. The N terminal forms a seven-bladed beta propeller structure. This family now contains other sized nucleoporins, including Nup155, Nup8, Nuo132, Nup15 and Nup170.
Pssm-ID: 400932 Cd Length: 426 Bit Score: 353.62 E-value: 3.23e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 2420 NLPELSAVRRV-PLPPELVEQFSHMQCNCMMGVFPEISRAWLTIDNDIFMWNYEDG-----GDVAYFDGLSETILSVG-L 2492
Cdd:pfam08801 1 TENDFYKVSKLpPLPDEVLEELSFAEAPTKGGVFPEIGRAWITVDNKLFIWNYNSTassplTDTIPLDEESHTILPVGpL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 2493 VKPKAGIFQPHIHFLLVLATPVDVVILGLSFPKSQTAGLNdsmsgaMQLLPDPLYSIPTDNTY-MLAITSTDLGRIFLAG 2571
Cdd:pfam08801 81 VKPKPGTFVPEPGLVLVVATTGDIVYWESISSAGALLSLN------ELQGLETDLSVLSDGEYvTDLVNSEPAGRIFLAG 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 2572 KDGCLYEIAYQADAGWFSQRCRKINHSKSSLSF--LIPSLLQFSFsEDDPVVQIAIDNSRNT--LYTRSEKGVLQVYDLG 2647
Cdd:pfam08801 155 STGRLYELTYRDSSGKPSLKCRKIRSPSGGFSSlsIIPSVFGGGS-EREEIVSLRVDPSRGErlLYTLTSKGVIQVWDLS 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 2648 TDGqGMSRVAAMSQNSIVSAAGNITRT-IDRSVFKPIVQIAVIDRSESSDCQLLAVTHAGVRLYFSTTPFappnarqSVS 2726
Cdd:pfam08801 234 SSG-GSDLKSDADIRQIILEAISLISTaPLASKSLKILDISPIDSDESSLLHLVAITSNGVRLYYLLSTI-------LLD 305
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 2727 RPSLLALVHVRLPP---GFSASSTL-QKPSKVHKALYNKGVLLMAAseTEDNDILWCINHDSFPFKKpLMEAQMTSNIDG 2802
Cdd:pfam08801 306 SPSVLSLSSVRFPPrlnTYSSKLLEgKKKPRLLIPSYSPGTFLFVV--FDSSVVLVSLSDYGFPHGK-LVEDTSFYPLDG 382
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 1878401830 2803 hSWAlSAIEEMKlpkivtPLNKDFIPLTDSPVVVQQHNipPQKFVLLSAQGSHI 2856
Cdd:pfam08801 383 -PWE-DIISLRP------VLDATILGSGYENVSASQYS--PAKFVLLTNFGVVI 426
|
|
| NUP170 |
COG5308 |
Nuclear pore complex subunit [Intracellular trafficking and secretion]; |
2426-3625 |
1.98e-94 |
|
Nuclear pore complex subunit [Intracellular trafficking and secretion];
Pssm-ID: 227624 [Multi-domain] Cd Length: 1263 Bit Score: 337.31 E-value: 1.98e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 2426 AVRRVPLPPELVEQFSHMQCNCMMGVFPEISRAWLTIDNDIFMWNYEDGGDVAYFDGLSETILSVGLVKPKAGIFQPHIH 2505
Cdd:COG5308 64 AQQVMNIPDRILSQISRTEYKTDMGIFPELNRCWITNDNKLILWNYNNSNEYQEIDDFSHTILKVKLVRPKANTFVSRIS 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 2506 FLLVLATPVDVVILGLSFpksqtaglnDSMSGAMQLLPDPLySIPTDNTYMLAITSTDLGRIFLAG-KDGCLYEIAYQAD 2584
Cdd:COG5308 144 HLLFVATEKEVMILGVSK---------DTKTGELSLFNTGL-VVSVQGINVRCIVSEEDGRIFFGGeNDPNVYELVYKSS 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 2585 AGWFSQRCRKINHSKSSLSFLIPSLLQFSFSEdDPVVQIAIDNSRNTLYTRSEKGVLQVYDLGTDgqGMSRVAAMSQNSI 2664
Cdd:COG5308 214 DSWFNSKCSKICLTKSILSSLLPSFFSFGIPG-ETIKQLAVDQSRGLLYVLRKKSAVRAYSITKN--GLVGPVFISFASI 290
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 2665 VSAAG--NITRTIDRSVFKPIVQIAVIDRSESSDCQLLAVTHAGVRLYF--------------STTPFAPPNARQSV--- 2725
Cdd:COG5308 291 DRNAAilNATSPLLEPRMYKIVKIVSIPAYENNQLFLVAITSTGCRLYFdgsrgrvsivalklDSVKFPPPSTLMQLeqn 370
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 2726 --SRPSLLALVHVRL-PPGFS-ASSTLQKPSKVhKALYNKGVLLMA------ASETEDNDILWCInhdsfpfkkplmeaq 2795
Cdd:COG5308 371 kgSRDFYENLFLDRLvMLKRQpNSSDMTETTEM-STIISPGIYFSAvnkrydSSNTNKGSTVTAI--------------- 434
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 2796 mTSNIDGHSWALSA-----IEEMKLPKIVTPLN-----KDFIPLTDSpvvVQQHNIPPQKFVLLSAQGSHIFHKLRPVDQ 2865
Cdd:COG5308 435 -SLNVDQHKLWVSIpdygiLKSSKYVENVVFLDdieliQNIDPRTEL---FNQTNTPQATFALLYGNEKLFVAVLTSVEK 510
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 2866 LrhLLVSSSGGE--SDEIER---FFKLHREEQACATALILACSTAacDREVSMWATRAFFRYGgeaqmrfpsamsapsnl 2940
Cdd:COG5308 511 E--IYSYRTPDEifSGLIGNplpFYKSYGEAEACSTALLYYCKLN--KSEDVGSLALLFLKLG----------------- 569
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 2941 gpllgspVPGSPLPVgsPFPNPSFLATPapgmmPPSVSTPFIPatpmspgsaampamSSGPEVLFSGKHNGIVIYFSRIL 3020
Cdd:COG5308 570 -------IPDVVDIK--PKYYRYSGSVP-----ILSQSRFNKP--------------SSLDFVRLSPRFYGLALLITRLE 621
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 3021 GNIWdgslvLEQPISKGSQTVIVMESTACSTDLEAVLVELQGLKEFIDKNSQFsptslgaasfsspanlqqrLLGFMRPD 3100
Cdd:COG5308 622 RNIW-----LERVFSKMQNKMINIRGASIKIKIEYYLSGIDFLDEFLENNKSS-------------------IEGLNSPL 677
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 3101 GTSSQQVQQelQRKYQTEAQVYEkmslqgIQQLVH-RSFQTLALWKLLCNhqFSLIVSELPKDYQEQLKAISFKDIVI-- 3177
Cdd:COG5308 678 ISNDEIAVQ--AESIANNALLLE------YQSIKEgLSLLNVLYEDGVSD--FHEIVSSTSIDIQKSCSNLTFSELFTpn 747
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 3178 RGRELTGALITALINVYIKDSASVDAISTLLREVCPLLYSNDDSVCSKANELLQGSRQIQNKAEKERT-LKDSLRLYQQI 3256
Cdd:COG5308 748 KTKKLIKEILKSLVNRNIQSGGSIEYLIKTLSERCGSFCSAEDVLYFRALEHLNKAKSREVDLESLNNhLKNAVQLNESL 827
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 3257 S---NHTDLPLVCSQYRQVRFYEGVVELCLTAADKKDPQKLGPHFYKNGEPEEDAvGQQAFQERLSCYKCITDTMQelin 3333
Cdd:COG5308 828 VakyNEEGLRYAVTTMISLNYYPKAVNFLLEYAVEIDKGNQACAYVLNGLAENDP-RKDFYDKRIKVYSLIFEILI---- 902
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 3334 hskaapqspSVPKQpgppvMTSDPNMLSNEDAAAhfeqmlglAQRSQDELFHIALYNWLIQADLTDKLLEVNSQYLEDHL 3413
Cdd:COG5308 903 ---------SVDKE-----NSLRNSELKCCVYPS--------AMGSNDRLFHYCFYDWLVFKGRTDRLIKIDSPFILPYL 960
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 3414 MhmiKQDQNKVRNMDLLWRYYEKSRSFGKAAHVLARLADMHsTEISLQQRLEYISRAILSAKSSSCVSSMGADGEFLHEL 3493
Cdd:COG5308 961 K---EKAMSSLKISNLLWKYYVKREDFVEAAQVLYELATSN-FDVSLEERIELLRRANGFCSSHVPNSQKHVNVQLFNEV 1036
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 3494 EEKMEVVRIQVQIQETLRRQYSQHLSVQGAIS-QLDLELMDITKLYGEFADHFRLSECKLAIIHCAGHSDPILVHSLWQE 3572
Cdd:COG5308 1037 KERLEVASIQDDILRLVRVDPRIDNNKREELSkQLDGEILSLSELFNDYADPLKYPEIALKIFKISDYRDKAVIRELWEE 1116
|
1210 1220 1230 1240 1250
....*....|....*....|....*....|....*....|....*....|....*..
gi 1878401830 3573 IM---EKELNDSVAMSPADR-MRALNLKLISLGKlyagTPRYFPLDFLVKFLEQEVC 3625
Cdd:COG5308 1117 LMsshENAIISPVGSSDFESfVSFLSNLLIKISK----SENVFPIMDLNDIVGDIFC 1169
|
|
| Nipped-B_C |
pfam12830 |
Sister chromatid cohesion C-terminus; This domain lies towards the C-terminus of nipped-B or ... |
1819-1995 |
9.29e-66 |
|
Sister chromatid cohesion C-terminus; This domain lies towards the C-terminus of nipped-B or sister chromatid cohesion proteins.
Pssm-ID: 463722 Cd Length: 180 Bit Score: 221.64 E-value: 9.29e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 1819 QLYLKQVLEAFFHTQSSVRHFALNVIALTLSQGLIHPVQCVPYLIAMGTDPEPTMRNKADQQLVEIDKKYTGFIHMKAVA 1898
Cdd:pfam12830 6 QRYLKHILEICLSSDDQVRLLALEVLALILRQGLVHPKECIPTLIALETSPNPYIRKLAFELHKELHEKHESLLESRYME 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 1899 GMKMSYQVQQAIMGSRDTiirgfrqdESNSALCSHLFTMVRGNRQHRRAFLISLLNLFDD------SAKTEVNMLLFIAD 1972
Cdd:pfam12830 86 GIRLAFEYQRRVLSGATL--------EPPTSFLSLLYSLLRSNKKSRKKFLKSLVKLFFDldlsseSSPSDLDFLRFLAE 157
|
170 180
....*....|....*....|...
gi 1878401830 1973 NLACFPFQTQEEPLFIMHHIDIT 1995
Cdd:pfam12830 158 NLAFLPYQTQDEVLFLIHHIDRI 180
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
141-674 |
2.62e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.99 E-value: 2.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 141 EIERIERESAIERERCSKEVQDKDKPLKKRKQDSYPQEPGAAGTAGTAGGPGVGGGGSAGNKPTPQEASAASNGANRPAL 220
Cdd:PTZ00121 1216 EARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEA 1295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 221 MVSIDLQQAGRAEGQLECPVPAQEAQRWAEDGSDSAGVLRLKSKTDEELQRAADGRPEVIKQQKMASDGRPETPKHKQES 300
Cdd:PTZ00121 1296 KKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEE 1375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 301 RR---DSSGKVQGSDKRPDVAKHRHD---GKPDKIRPETPRKDGRPELSRDGhrEEKHKDRERDRE----RSSDGSKIRR 370
Cdd:PTZ00121 1376 AKkkaDAAKKKAEEKKKADEAKKKAEedkKKADELKKAAAAKKKADEAKKKA--EEKKKADEAKKKaeeaKKADEAKKKA 1453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 371 PETPKSSS---RSEQDRPGRDRDRERDKERDKDRDKDRDRERKHRSESRehrdRRSPEHRSRPDSPRVKQESRSGLDSGR 447
Cdd:PTZ00121 1454 EEAKKAEEakkKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEA----KKAAEAKKKADEAKKAEEAKKADEAKK 1529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 448 PRTDLKSPNSK--EERRSSDGTRKSSDGSKLPP----PDSRAGEFPDFLLGGKSGALK-------NFVIPKLKRDKDGNA 514
Cdd:PTZ00121 1530 AEEAKKADEAKkaEEKKKADELKKAEELKKAEEkkkaEEAKKAEEDKNMALRKAEEAKkaeeariEEVMKLYEEEKKMKA 1609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 515 EPRRPGEnwsQPRVKLERLGLVEDISKRskpVVVLQKLSLDEVQK---IIKERHGTSSKSGKNRPSFGKSSKGGidESVF 591
Cdd:PTZ00121 1610 EEAKKAE---EAKIKAEELKKAEEEKKK---VEQLKKKEAEEKKKaeeLKKAEEENKIKAAEEAKKAEEDKKKA--EEAK 1681
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 592 KELPPHLLAEIESTMPLCERVKMNKRKRSTANEKPKYAEVSSDEDTESESAPKRSKKdrdrdrdrawEHEDKKISGERRR 671
Cdd:PTZ00121 1682 KAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKE----------AEEDKKKAEEAKK 1751
|
...
gi 1878401830 672 SGG 674
Cdd:PTZ00121 1752 DEE 1754
|
|
| NESP55 |
pfam06390 |
Neuroendocrine-specific golgi protein P55 (NESP55); This family consists of several mammalian ... |
282-487 |
2.87e-06 |
|
Neuroendocrine-specific golgi protein P55 (NESP55); This family consists of several mammalian neuroendocrine-specific golgi protein P55 (NESP55) sequences. NESP55 is a novel member of the chromogranin family and is a soluble, acidic, heat-stable secretory protein that is expressed exclusively in endocrine and nervous tissues, although less widely than chromogranins.
Pssm-ID: 115071 [Multi-domain] Cd Length: 261 Bit Score: 51.79 E-value: 2.87e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 282 QQKMASDGRPETPKHKQESRRDSSGKVQGSDKRPDvAKHRH-DGKPDKIRPETPrkdgrpELSRDGHREEKHKDRERDRE 360
Cdd:pfam06390 53 QQRAAAQRRSFLNAHHRSAAAAAAAQVFPEPSEPE-SDHEDeDFEPELARPECL------EYDEDDFDTETDSETEPESD 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 361 RSSDGSKIRRPET-----PKSSSRSE-QDRPGRDRDRERDKERDKDRDKDRDrerkhRSESREHRDRRSPEHRSRPDSPR 434
Cdd:pfam06390 126 IESETEFETEPETepdtaPTTEPETEpEDEPGPVVPKGATFHQSLTERLHAL-----KLQSADASPRRAPPSTQEPESAR 200
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1878401830 435 VKQESRSGLDSGRPRTDLKSPNSKEERRSSD---GTRKSS---DGSKLPPPdsRAGEFP 487
Cdd:pfam06390 201 EGEEPERGPLDKDPRDPEEEEEEKEEEKQQPhrcKPKKPArrrDPSPESPP--KKGAIP 257
|
|
| Nucleoporin_C |
pfam03177 |
Non-repetitive/WGA-negative nucleoporin C-terminal; This is the C-termainl half of a family of ... |
3198-3588 |
3.08e-06 |
|
Non-repetitive/WGA-negative nucleoporin C-terminal; This is the C-termainl half of a family of nucleoporin proteins. Nucleoporins are the main components of the nuclear pore complex in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. Two nucleoporin classes are known: one is characterized by the FG repeat pfam03093; the other is represented by this family, and lacks any repeats. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore.
Pssm-ID: 427181 Cd Length: 559 Bit Score: 53.08 E-value: 3.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 3198 SASVDAISTLLREVCPLLYSNDDSVCSKANELLQgsrqiQNKAEKERTLKDSLRLYQQISNhtdlplvCSQYRQVRFyeg 3277
Cdd:pfam03177 162 GGSIEPDATLLQEICGSFCSLTDVLGFSAIERLR-----WAKEQLDPKLQNAGKLLEEAYD-------SDRKWQIFK--- 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 3278 vvelcLTAADKkdpqklgphfykngepEEDAVgqqAFQERLSCYKCITDTMQELINHSKaapqspsvpkQPGPPVMTSDP 3357
Cdd:pfam03177 227 -----LASIGK----------------LEEAI---ELAEKLRDYPALVELLLEIANQLE----------DKAPDSGDDER 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 3358 NMLSNEdaAAHFEQMLGLAQRSQDELFHIALYNWLIQADLTDKLLEVN------SQYLEDhlmhmiKQDQNKvrnmdLLW 3431
Cdd:pfam03177 273 KEYYNR--AEELDKRISLYFERFGELFAYAFYDWLISQGQVERLLDFKdntpfiTPFLRE------KPEYAK-----LSW 339
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 3432 RYY-EKSRSFGKAAHVLARLADMHSTeISLQQRLEyISRAILSAKSSSCVSSMGADG--EFLHELEEKMEVVRIQVQIqe 3508
Cdd:pfam03177 340 INDvTKEKDYDHAAEILYSLALSQEQ-DVWSKRIE-LSLAKLALLAELEESDTPDVGleTDLERIDDLLEVINIQDDL-- 415
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 3509 tlrrqYSQ-HLSVQGAISQldlelmditklygefadhfrLSECKLAIIHCAGHSD--PILvHSLWQEIMEKELNDSVaMS 3585
Cdd:pfam03177 416 -----YSLiLPSIQGAIDE--------------------KAEVQLAMEQFGNVLDdrPAL-RQLLKDGLKKLLKHKI-LD 468
|
...
gi 1878401830 3586 PAD 3588
Cdd:pfam03177 469 ASD 471
|
|
| SF-CC1 |
TIGR01622 |
splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors ... |
351-472 |
5.74e-05 |
|
splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors including the Pad-1 protein (N. crassa), CAPER (M. musculus) and CC1.3 (H.sapiens). These proteins are characterized by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 H. sapiens paralogs, two) RNA recognition domains (rrm: pfam00706). These splicing factors are closely related to the U2AF splicing factor family (TIGR01642). A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed.
Pssm-ID: 273721 [Multi-domain] Cd Length: 494 Bit Score: 48.76 E-value: 5.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 351 KHKDRERDRERSSDGSKIRRPETPKSSSRSEQdrpgrdrdrerdkerdkdrdkdrdrerkhRSESREH-RDRRSPEHRSR 429
Cdd:TIGR01622 1 RYRDRERERLRDSSSAGDRDRRRDKGRERSRD-----------------------------RSRDRERsRSRRRDRHRDR 51
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 1878401830 430 pDSPR-VKQESRSGLDSGRPRTDLKSPNSKEERRSSDGTRKSSD 472
Cdd:TIGR01622 52 -DYYRgRERRSRSRRPNRRYRPREKRRRRGDSYRRRRDDRRSRR 94
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
2915-3001 |
2.29e-04 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 47.63 E-value: 2.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 2915 ATRAFFRYGGEAQMRFPSAMSAPSNLGPLLGSPVPGSPLPVGSPFPNPSFLATPAP-GMMPPSVSTPFIPATPMSPGSAA 2993
Cdd:PHA03247 2667 ARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPpGPAAARQASPALPAAPAPPAVPA 2746
|
....*...
gi 1878401830 2994 MPAMSSGP 3001
Cdd:PHA03247 2747 GPATPGGP 2754
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| SCC2 |
cd23958 |
Sister chromatid cohesion protein 2 and homologs; This family includes Sister chromatid ... |
800-2007 |
0e+00 |
|
Sister chromatid cohesion protein 2 and homologs; This family includes Sister chromatid cohesion protein 2 (Scc2) and its homolog (Scc2 homolog, also called Nipped-B-like protein or NIPBL). Scc2/NIPBL and Scc4 form a complex that is responsible for loading the cohesin protein onto sister chromatids during mitosis and meiosis. Cohesin is a ring-shaped protein complex that encircles the sister chromatids and helps to hold them together until they are ready to be separated during cell division. In addition to its role in chromosome segregation, cohesin also plays important roles in other cellular processes such as transcription, chromosome condensation, and DNA repair.
Pssm-ID: 467937 [Multi-domain] Cd Length: 1197 Bit Score: 1379.70 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 800 KLVKVLGILEKNIQDGAKLSTHMNHDNEaEDEERLWRDLIMERVTKSADSCLTalnIMTSLRMPKAVYIEDVIERVLQFT 879
Cdd:cd23958 1 KLVRLLTILERNIRDGESLDLDLDESQE-DDEERLWLLERIDRALEAADASLT---ILTSPGLPKQLYSEDLIERVVDFL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 880 KFHLQNTLYPQYDPVYRVDPHGGGMlssKAKRAKCSTHKQRVIVMLYNKVCDIVSNISELLEIQLLTDTTILQVSSMGIT 959
Cdd:cd23958 77 KFQLENTIYPAYDPVYRSDSSAKAG---KKKRAKASSKKKKSVSTLLNKLCELLSLLAELLSLQSLTDSVILQLVYLAIS 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 960 PFFVE----NVSELQLCAIKLVTAVFSRYEKHRQLILEEIFTSLARLPTSKRSLRNFRLNSSDvdgepmYIQMVTALVLQ 1035
Cdd:cd23958 154 PFFVEnavsNVDELQLSALKLLTSIFSRYPDQRQFIIEEILSSLAKLPSSKRNLRQFRLNDGK------SIQMVTALLLQ 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 1036 LIQCVVHLPTEKDNTDEEY-------EKKVDQDVLITNSYETAMRTAQNFLSVFLKKCGSK--QGEEDYRPLFENFVQDL 1106
Cdd:cd23958 228 LVQSSVKLPNLEKESSRDKsleedsdELLEDEESALAKSYESAVRIASYFLSFLLQKCTKKkkEKDTDYRPLFENFVQDL 307
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 1107 LSTVNKPEWPAAELLLSLLGRLLVHQFSNKQTEMALRVASLDYLGTVAARLRKDAVTskmdqrsidrilreasgndetQQ 1186
Cdd:cd23958 308 LTVLNLPEWPAAELLLSLLGRLLVSIFSNKKTDANARVMALDLLGLIAARLRKDALA---------------------EE 366
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 1187 LQKALLDYLDENVETDPSLLFARKFYIAQWFRDTTTETEKAMKsqnqkeddsaegahhAKDIETTGEIMQRAEKRKQFLR 1266
Cdd:cd23958 367 LQKALLDYLAENSSSDPSLESARGFYLAQWLRDLSNELEKAEK---------------AAEEEDTILKLELSELRKKFLD 431
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 1267 SIikttpsqFGTLKMNSDTVDYEDACLVVRYLASMRPFAQSFDIYLTQILRVLGESAIAVRTKAMKCLSEVVAVDPSILA 1346
Cdd:cd23958 432 SK-------ILSKEEEASPLSREDAKLLYRALASQRPLSQSFDPILKQLLSSLDEPAVTLRTKALKALSLVVEADPSILG 504
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 1347 RSDMQRGVHGRLMDNSTSVREAAVELLGRFVLSRPQLTEQYYDMLIERILDTGISVRKRVIKILRDICLEQPTFNKITEM 1426
Cdd:cd23958 505 DPDVQRAVEGRLLDSSASVREAAVELVGKYISSRPDLAEQYYEMIAERILDTGVSVRKRVIKILRDIYLRTPDFEIKVDI 584
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 1427 CVKMIRRVND-EEGIKKLVNETFQKLWFTPTPNH-----DKETMTRKIINITDVVSACRDsGYDWFEQLLQNLLKTEEDA 1500
Cdd:cd23958 585 CVRLLRRINDeEESIKDLARKTFQELWFTPFPESsspaqDKESLAERVLLIVDVVAACRK-GLDLLEQLLKRLLKSKEDK 663
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 1501 SYKPTRKACAQLVDNLVEHILKYEEESLTDCESkgvnsnRLVACITTLYLFSKIR-AQLMVKHAMTMQPYLTTKCNNQND 1579
Cdd:cd23958 664 EDKSVRKACKQLVDCLVELILELEEDDDESSES------DLVACLSTLHLFAKADpKLLLVEHAETLQPYLKSKCSTRED 737
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 1580 FMVICNVAKILELVVPLMDHPSETFLTTIEEDLMKLIIKYGMTVVQHCVSCLGAIVNKVTHNYKFVWACFNRYYGALNKL 1659
Cdd:cd23958 738 QQVLRYVLRILRSVLPLLSHPSESFLEELEEDLLKLLLKHSVTVLQEAIACLCAVVNKLTKNYERLRKALQSCLKLLRKY 817
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 1660 KTQHQEDSTSTVlvsNKPALLRSLFTVGALCRHFDFDREEFKGNN-----KVVIKDKVLELLLYFTKNE-DEEVQTKAII 1733
Cdd:cd23958 818 KRQANLDPSSLK---EDPKLLRLLYILGLLARYCDFDSERDDFEKaplktKESVKELVFDLLLFFTKPPiDEDVRKKALQ 894
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 1734 GLGFLFIQHPGLMFVPDVKTLYNGLLSDrkKSVNLKIQVLKNLQTYLQEEDSRMQEADREWKKLSKQ-----EDLKEMGD 1808
Cdd:cd23958 895 ALGFLCIAHPKLFLSPEVLKLLDEILAS--GSLKLKLQVLRNLQEFLQAEEKRMEAADAEWKKNSKAadvkvLDGKEMGD 972
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 1809 ISSGMSSSIMQLYLKQVLEAFFHTQSSVRHFALNVIALTLSQGLIHPVQCVPYLIAMGTDPEPTMRNKADQQLVEIDKKY 1888
Cdd:cd23958 973 ADSGVASSIMQRYLKDILELCLSSDSQVRLAALKVLELILRQGLVHPIQCVPTLIALETDPNPAIRKLALRLLKELHEKY 1052
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 1889 TGFIHMKAVAGMKMSYQVQQAImgSRDTIIRGFRQDESNSALCSHLFTMVRGNRQHRRAFLISLLNLFDDS------AKT 1962
Cdd:cd23958 1053 ESLVESKYLEGVRLAFQYQKRL--AGDTRGRGFRTDSPPTALLGRLYSLLRGNRKSRRKFLKSLLKLFDFDlkkssdSPS 1130
|
1210 1220 1230 1240
....*....|....*....|....*....|....*....|....*
gi 1878401830 1963 EVNMLLFIADNLACFPFQTQEEPLFIMHHIDITLSVSGSNLLQSF 2007
Cdd:cd23958 1131 DLDFLLFLAENLAFLPYQTQDEPLFVIHTIDRILSVTGSSLLQAI 1175
|
|
| Nucleoporin_N |
pfam08801 |
Nup133 N terminal like; Nup133 is a nucleoporin that is crucial for nuclear pore complex (NPC) ... |
2420-2856 |
3.23e-108 |
|
Nup133 N terminal like; Nup133 is a nucleoporin that is crucial for nuclear pore complex (NPC) biogenesis. The N terminal forms a seven-bladed beta propeller structure. This family now contains other sized nucleoporins, including Nup155, Nup8, Nuo132, Nup15 and Nup170.
Pssm-ID: 400932 Cd Length: 426 Bit Score: 353.62 E-value: 3.23e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 2420 NLPELSAVRRV-PLPPELVEQFSHMQCNCMMGVFPEISRAWLTIDNDIFMWNYEDG-----GDVAYFDGLSETILSVG-L 2492
Cdd:pfam08801 1 TENDFYKVSKLpPLPDEVLEELSFAEAPTKGGVFPEIGRAWITVDNKLFIWNYNSTassplTDTIPLDEESHTILPVGpL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 2493 VKPKAGIFQPHIHFLLVLATPVDVVILGLSFPKSQTAGLNdsmsgaMQLLPDPLYSIPTDNTY-MLAITSTDLGRIFLAG 2571
Cdd:pfam08801 81 VKPKPGTFVPEPGLVLVVATTGDIVYWESISSAGALLSLN------ELQGLETDLSVLSDGEYvTDLVNSEPAGRIFLAG 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 2572 KDGCLYEIAYQADAGWFSQRCRKINHSKSSLSF--LIPSLLQFSFsEDDPVVQIAIDNSRNT--LYTRSEKGVLQVYDLG 2647
Cdd:pfam08801 155 STGRLYELTYRDSSGKPSLKCRKIRSPSGGFSSlsIIPSVFGGGS-EREEIVSLRVDPSRGErlLYTLTSKGVIQVWDLS 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 2648 TDGqGMSRVAAMSQNSIVSAAGNITRT-IDRSVFKPIVQIAVIDRSESSDCQLLAVTHAGVRLYFSTTPFappnarqSVS 2726
Cdd:pfam08801 234 SSG-GSDLKSDADIRQIILEAISLISTaPLASKSLKILDISPIDSDESSLLHLVAITSNGVRLYYLLSTI-------LLD 305
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 2727 RPSLLALVHVRLPP---GFSASSTL-QKPSKVHKALYNKGVLLMAAseTEDNDILWCINHDSFPFKKpLMEAQMTSNIDG 2802
Cdd:pfam08801 306 SPSVLSLSSVRFPPrlnTYSSKLLEgKKKPRLLIPSYSPGTFLFVV--FDSSVVLVSLSDYGFPHGK-LVEDTSFYPLDG 382
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 1878401830 2803 hSWAlSAIEEMKlpkivtPLNKDFIPLTDSPVVVQQHNipPQKFVLLSAQGSHI 2856
Cdd:pfam08801 383 -PWE-DIISLRP------VLDATILGSGYENVSASQYS--PAKFVLLTNFGVVI 426
|
|
| NUP170 |
COG5308 |
Nuclear pore complex subunit [Intracellular trafficking and secretion]; |
2426-3625 |
1.98e-94 |
|
Nuclear pore complex subunit [Intracellular trafficking and secretion];
Pssm-ID: 227624 [Multi-domain] Cd Length: 1263 Bit Score: 337.31 E-value: 1.98e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 2426 AVRRVPLPPELVEQFSHMQCNCMMGVFPEISRAWLTIDNDIFMWNYEDGGDVAYFDGLSETILSVGLVKPKAGIFQPHIH 2505
Cdd:COG5308 64 AQQVMNIPDRILSQISRTEYKTDMGIFPELNRCWITNDNKLILWNYNNSNEYQEIDDFSHTILKVKLVRPKANTFVSRIS 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 2506 FLLVLATPVDVVILGLSFpksqtaglnDSMSGAMQLLPDPLySIPTDNTYMLAITSTDLGRIFLAG-KDGCLYEIAYQAD 2584
Cdd:COG5308 144 HLLFVATEKEVMILGVSK---------DTKTGELSLFNTGL-VVSVQGINVRCIVSEEDGRIFFGGeNDPNVYELVYKSS 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 2585 AGWFSQRCRKINHSKSSLSFLIPSLLQFSFSEdDPVVQIAIDNSRNTLYTRSEKGVLQVYDLGTDgqGMSRVAAMSQNSI 2664
Cdd:COG5308 214 DSWFNSKCSKICLTKSILSSLLPSFFSFGIPG-ETIKQLAVDQSRGLLYVLRKKSAVRAYSITKN--GLVGPVFISFASI 290
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 2665 VSAAG--NITRTIDRSVFKPIVQIAVIDRSESSDCQLLAVTHAGVRLYF--------------STTPFAPPNARQSV--- 2725
Cdd:COG5308 291 DRNAAilNATSPLLEPRMYKIVKIVSIPAYENNQLFLVAITSTGCRLYFdgsrgrvsivalklDSVKFPPPSTLMQLeqn 370
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 2726 --SRPSLLALVHVRL-PPGFS-ASSTLQKPSKVhKALYNKGVLLMA------ASETEDNDILWCInhdsfpfkkplmeaq 2795
Cdd:COG5308 371 kgSRDFYENLFLDRLvMLKRQpNSSDMTETTEM-STIISPGIYFSAvnkrydSSNTNKGSTVTAI--------------- 434
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 2796 mTSNIDGHSWALSA-----IEEMKLPKIVTPLN-----KDFIPLTDSpvvVQQHNIPPQKFVLLSAQGSHIFHKLRPVDQ 2865
Cdd:COG5308 435 -SLNVDQHKLWVSIpdygiLKSSKYVENVVFLDdieliQNIDPRTEL---FNQTNTPQATFALLYGNEKLFVAVLTSVEK 510
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 2866 LrhLLVSSSGGE--SDEIER---FFKLHREEQACATALILACSTAacDREVSMWATRAFFRYGgeaqmrfpsamsapsnl 2940
Cdd:COG5308 511 E--IYSYRTPDEifSGLIGNplpFYKSYGEAEACSTALLYYCKLN--KSEDVGSLALLFLKLG----------------- 569
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 2941 gpllgspVPGSPLPVgsPFPNPSFLATPapgmmPPSVSTPFIPatpmspgsaampamSSGPEVLFSGKHNGIVIYFSRIL 3020
Cdd:COG5308 570 -------IPDVVDIK--PKYYRYSGSVP-----ILSQSRFNKP--------------SSLDFVRLSPRFYGLALLITRLE 621
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 3021 GNIWdgslvLEQPISKGSQTVIVMESTACSTDLEAVLVELQGLKEFIDKNSQFsptslgaasfsspanlqqrLLGFMRPD 3100
Cdd:COG5308 622 RNIW-----LERVFSKMQNKMINIRGASIKIKIEYYLSGIDFLDEFLENNKSS-------------------IEGLNSPL 677
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 3101 GTSSQQVQQelQRKYQTEAQVYEkmslqgIQQLVH-RSFQTLALWKLLCNhqFSLIVSELPKDYQEQLKAISFKDIVI-- 3177
Cdd:COG5308 678 ISNDEIAVQ--AESIANNALLLE------YQSIKEgLSLLNVLYEDGVSD--FHEIVSSTSIDIQKSCSNLTFSELFTpn 747
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 3178 RGRELTGALITALINVYIKDSASVDAISTLLREVCPLLYSNDDSVCSKANELLQGSRQIQNKAEKERT-LKDSLRLYQQI 3256
Cdd:COG5308 748 KTKKLIKEILKSLVNRNIQSGGSIEYLIKTLSERCGSFCSAEDVLYFRALEHLNKAKSREVDLESLNNhLKNAVQLNESL 827
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 3257 S---NHTDLPLVCSQYRQVRFYEGVVELCLTAADKKDPQKLGPHFYKNGEPEEDAvGQQAFQERLSCYKCITDTMQelin 3333
Cdd:COG5308 828 VakyNEEGLRYAVTTMISLNYYPKAVNFLLEYAVEIDKGNQACAYVLNGLAENDP-RKDFYDKRIKVYSLIFEILI---- 902
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 3334 hskaapqspSVPKQpgppvMTSDPNMLSNEDAAAhfeqmlglAQRSQDELFHIALYNWLIQADLTDKLLEVNSQYLEDHL 3413
Cdd:COG5308 903 ---------SVDKE-----NSLRNSELKCCVYPS--------AMGSNDRLFHYCFYDWLVFKGRTDRLIKIDSPFILPYL 960
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 3414 MhmiKQDQNKVRNMDLLWRYYEKSRSFGKAAHVLARLADMHsTEISLQQRLEYISRAILSAKSSSCVSSMGADGEFLHEL 3493
Cdd:COG5308 961 K---EKAMSSLKISNLLWKYYVKREDFVEAAQVLYELATSN-FDVSLEERIELLRRANGFCSSHVPNSQKHVNVQLFNEV 1036
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 3494 EEKMEVVRIQVQIQETLRRQYSQHLSVQGAIS-QLDLELMDITKLYGEFADHFRLSECKLAIIHCAGHSDPILVHSLWQE 3572
Cdd:COG5308 1037 KERLEVASIQDDILRLVRVDPRIDNNKREELSkQLDGEILSLSELFNDYADPLKYPEIALKIFKISDYRDKAVIRELWEE 1116
|
1210 1220 1230 1240 1250
....*....|....*....|....*....|....*....|....*....|....*..
gi 1878401830 3573 IM---EKELNDSVAMSPADR-MRALNLKLISLGKlyagTPRYFPLDFLVKFLEQEVC 3625
Cdd:COG5308 1117 LMsshENAIISPVGSSDFESfVSFLSNLLIKISK----SENVFPIMDLNDIVGDIFC 1169
|
|
| Nipped-B_C |
pfam12830 |
Sister chromatid cohesion C-terminus; This domain lies towards the C-terminus of nipped-B or ... |
1819-1995 |
9.29e-66 |
|
Sister chromatid cohesion C-terminus; This domain lies towards the C-terminus of nipped-B or sister chromatid cohesion proteins.
Pssm-ID: 463722 Cd Length: 180 Bit Score: 221.64 E-value: 9.29e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 1819 QLYLKQVLEAFFHTQSSVRHFALNVIALTLSQGLIHPVQCVPYLIAMGTDPEPTMRNKADQQLVEIDKKYTGFIHMKAVA 1898
Cdd:pfam12830 6 QRYLKHILEICLSSDDQVRLLALEVLALILRQGLVHPKECIPTLIALETSPNPYIRKLAFELHKELHEKHESLLESRYME 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 1899 GMKMSYQVQQAIMGSRDTiirgfrqdESNSALCSHLFTMVRGNRQHRRAFLISLLNLFDD------SAKTEVNMLLFIAD 1972
Cdd:pfam12830 86 GIRLAFEYQRRVLSGATL--------EPPTSFLSLLYSLLRSNKKSRKKFLKSLVKLFFDldlsseSSPSDLDFLRFLAE 157
|
170 180
....*....|....*....|...
gi 1878401830 1973 NLACFPFQTQEEPLFIMHHIDIT 1995
Cdd:pfam12830 158 NLAFLPYQTQDEVLFLIHHIDRI 180
|
|
| Cohesin_HEAT |
pfam12765 |
HEAT repeat associated with sister chromatid cohesion; This HEAT repeat is found most ... |
1332-1373 |
2.53e-10 |
|
HEAT repeat associated with sister chromatid cohesion; This HEAT repeat is found most frequently in sister chromatid cohesion proteins such as Nipped-B. HEAT repeats are found tandemly repeated in many proteins, and they appear to serve as flexible scaffolding on which other components can assemble.
Pssm-ID: 403845 [Multi-domain] Cd Length: 42 Bit Score: 57.85 E-value: 2.53e-10
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 1878401830 1332 KCLSEVVAVDPSILARSDMQRGVHGRLMDNSTSVREAAVELL 1373
Cdd:pfam12765 1 KALSSLVEKDPSILDSPDVKEAISRRLTDSSPSVRDAALELL 42
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
141-674 |
2.62e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.99 E-value: 2.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 141 EIERIERESAIERERCSKEVQDKDKPLKKRKQDSYPQEPGAAGTAGTAGGPGVGGGGSAGNKPTPQEASAASNGANRPAL 220
Cdd:PTZ00121 1216 EARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEA 1295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 221 MVSIDLQQAGRAEGQLECPVPAQEAQRWAEDGSDSAGVLRLKSKTDEELQRAADGRPEVIKQQKMASDGRPETPKHKQES 300
Cdd:PTZ00121 1296 KKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEE 1375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 301 RR---DSSGKVQGSDKRPDVAKHRHD---GKPDKIRPETPRKDGRPELSRDGhrEEKHKDRERDRE----RSSDGSKIRR 370
Cdd:PTZ00121 1376 AKkkaDAAKKKAEEKKKADEAKKKAEedkKKADELKKAAAAKKKADEAKKKA--EEKKKADEAKKKaeeaKKADEAKKKA 1453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 371 PETPKSSS---RSEQDRPGRDRDRERDKERDKDRDKDRDRERKHRSESRehrdRRSPEHRSRPDSPRVKQESRSGLDSGR 447
Cdd:PTZ00121 1454 EEAKKAEEakkKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEA----KKAAEAKKKADEAKKAEEAKKADEAKK 1529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 448 PRTDLKSPNSK--EERRSSDGTRKSSDGSKLPP----PDSRAGEFPDFLLGGKSGALK-------NFVIPKLKRDKDGNA 514
Cdd:PTZ00121 1530 AEEAKKADEAKkaEEKKKADELKKAEELKKAEEkkkaEEAKKAEEDKNMALRKAEEAKkaeeariEEVMKLYEEEKKMKA 1609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 515 EPRRPGEnwsQPRVKLERLGLVEDISKRskpVVVLQKLSLDEVQK---IIKERHGTSSKSGKNRPSFGKSSKGGidESVF 591
Cdd:PTZ00121 1610 EEAKKAE---EAKIKAEELKKAEEEKKK---VEQLKKKEAEEKKKaeeLKKAEEENKIKAAEEAKKAEEDKKKA--EEAK 1681
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 592 KELPPHLLAEIESTMPLCERVKMNKRKRSTANEKPKYAEVSSDEDTESESAPKRSKKdrdrdrdrawEHEDKKISGERRR 671
Cdd:PTZ00121 1682 KAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKE----------AEEDKKKAEEAKK 1751
|
...
gi 1878401830 672 SGG 674
Cdd:PTZ00121 1752 DEE 1754
|
|
| NESP55 |
pfam06390 |
Neuroendocrine-specific golgi protein P55 (NESP55); This family consists of several mammalian ... |
282-487 |
2.87e-06 |
|
Neuroendocrine-specific golgi protein P55 (NESP55); This family consists of several mammalian neuroendocrine-specific golgi protein P55 (NESP55) sequences. NESP55 is a novel member of the chromogranin family and is a soluble, acidic, heat-stable secretory protein that is expressed exclusively in endocrine and nervous tissues, although less widely than chromogranins.
Pssm-ID: 115071 [Multi-domain] Cd Length: 261 Bit Score: 51.79 E-value: 2.87e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 282 QQKMASDGRPETPKHKQESRRDSSGKVQGSDKRPDvAKHRH-DGKPDKIRPETPrkdgrpELSRDGHREEKHKDRERDRE 360
Cdd:pfam06390 53 QQRAAAQRRSFLNAHHRSAAAAAAAQVFPEPSEPE-SDHEDeDFEPELARPECL------EYDEDDFDTETDSETEPESD 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 361 RSSDGSKIRRPET-----PKSSSRSE-QDRPGRDRDRERDKERDKDRDKDRDrerkhRSESREHRDRRSPEHRSRPDSPR 434
Cdd:pfam06390 126 IESETEFETEPETepdtaPTTEPETEpEDEPGPVVPKGATFHQSLTERLHAL-----KLQSADASPRRAPPSTQEPESAR 200
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1878401830 435 VKQESRSGLDSGRPRTDLKSPNSKEERRSSD---GTRKSS---DGSKLPPPdsRAGEFP 487
Cdd:pfam06390 201 EGEEPERGPLDKDPRDPEEEEEEKEEEKQQPhrcKPKKPArrrDPSPESPP--KKGAIP 257
|
|
| Nucleoporin_C |
pfam03177 |
Non-repetitive/WGA-negative nucleoporin C-terminal; This is the C-termainl half of a family of ... |
3198-3588 |
3.08e-06 |
|
Non-repetitive/WGA-negative nucleoporin C-terminal; This is the C-termainl half of a family of nucleoporin proteins. Nucleoporins are the main components of the nuclear pore complex in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. Two nucleoporin classes are known: one is characterized by the FG repeat pfam03093; the other is represented by this family, and lacks any repeats. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore.
Pssm-ID: 427181 Cd Length: 559 Bit Score: 53.08 E-value: 3.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 3198 SASVDAISTLLREVCPLLYSNDDSVCSKANELLQgsrqiQNKAEKERTLKDSLRLYQQISNhtdlplvCSQYRQVRFyeg 3277
Cdd:pfam03177 162 GGSIEPDATLLQEICGSFCSLTDVLGFSAIERLR-----WAKEQLDPKLQNAGKLLEEAYD-------SDRKWQIFK--- 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 3278 vvelcLTAADKkdpqklgphfykngepEEDAVgqqAFQERLSCYKCITDTMQELINHSKaapqspsvpkQPGPPVMTSDP 3357
Cdd:pfam03177 227 -----LASIGK----------------LEEAI---ELAEKLRDYPALVELLLEIANQLE----------DKAPDSGDDER 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 3358 NMLSNEdaAAHFEQMLGLAQRSQDELFHIALYNWLIQADLTDKLLEVN------SQYLEDhlmhmiKQDQNKvrnmdLLW 3431
Cdd:pfam03177 273 KEYYNR--AEELDKRISLYFERFGELFAYAFYDWLISQGQVERLLDFKdntpfiTPFLRE------KPEYAK-----LSW 339
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 3432 RYY-EKSRSFGKAAHVLARLADMHSTeISLQQRLEyISRAILSAKSSSCVSSMGADG--EFLHELEEKMEVVRIQVQIqe 3508
Cdd:pfam03177 340 INDvTKEKDYDHAAEILYSLALSQEQ-DVWSKRIE-LSLAKLALLAELEESDTPDVGleTDLERIDDLLEVINIQDDL-- 415
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 3509 tlrrqYSQ-HLSVQGAISQldlelmditklygefadhfrLSECKLAIIHCAGHSD--PILvHSLWQEIMEKELNDSVaMS 3585
Cdd:pfam03177 416 -----YSLiLPSIQGAIDE--------------------KAEVQLAMEQFGNVLDdrPAL-RQLLKDGLKKLLKHKI-LD 468
|
...
gi 1878401830 3586 PAD 3588
Cdd:pfam03177 469 ASD 471
|
|
| SF-CC1 |
TIGR01622 |
splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors ... |
351-472 |
5.74e-05 |
|
splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors including the Pad-1 protein (N. crassa), CAPER (M. musculus) and CC1.3 (H.sapiens). These proteins are characterized by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 H. sapiens paralogs, two) RNA recognition domains (rrm: pfam00706). These splicing factors are closely related to the U2AF splicing factor family (TIGR01642). A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed.
Pssm-ID: 273721 [Multi-domain] Cd Length: 494 Bit Score: 48.76 E-value: 5.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 351 KHKDRERDRERSSDGSKIRRPETPKSSSRSEQdrpgrdrdrerdkerdkdrdkdrdrerkhRSESREH-RDRRSPEHRSR 429
Cdd:TIGR01622 1 RYRDRERERLRDSSSAGDRDRRRDKGRERSRD-----------------------------RSRDRERsRSRRRDRHRDR 51
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 1878401830 430 pDSPR-VKQESRSGLDSGRPRTDLKSPNSKEERRSSDGTRKSSD 472
Cdd:TIGR01622 52 -DYYRgRERRSRSRRPNRRYRPREKRRRRGDSYRRRRDDRRSRR 94
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
203-483 |
8.15e-05 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 49.01 E-value: 8.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 203 PTPQEASAASNGAnRPALMVSIDLQqAGRAEGQLEC--PVPAQEAQRWAEDGSDSAGVLRLKSKTDEELQRAADGRPE-- 278
Cdd:PHA03307 116 PPPPTPPPASPPP-SPAPDLSEMLR-PVGSPGPPPAasPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAep 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 279 VIKQQKMASDGRPETPK----HKQESRRDSSGKVQGSDKRP---DVAKHRHDGKPDKIRPETPRK-DGRPELSRDGHREE 350
Cdd:PHA03307 194 PPSTPPAAASPRPPRRSspisASASSPAPAPGRSAADDAGAsssDSSSSESSGCGWGPENECPLPrPAPITLPTRIWEAS 273
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 351 KHKDRERD--RERSSDGSKIRRPETPKSSSRSEQdrpgrdrdrerdkerdkdrdkdrdrerkhRSESREHRDRRSPEHRS 428
Cdd:PHA03307 274 GWNGPSSRpgPASSSSSPRERSPSPSPSSPGSGP-----------------------------APSSPRASSSSSSSRES 324
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 1878401830 429 RPDSPRVKQESRSGLDSGRPRTDLKSPNSKEERRSSDGTRKSSDGSKLPPPDSRA 483
Cdd:PHA03307 325 SSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPA 379
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
203-481 |
1.09e-04 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 48.63 E-value: 1.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 203 PTPQEASAASNGANRPALMVSIDLQQAGRAEGQLECPVPAQEAQRwAEDGSDSAGVLRLKSKTDEELQRAADGRPEVikq 282
Cdd:PHA03307 79 APANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPP-ASPPPSPAPDLSEMLRPVGSPGPPPAASPPA--- 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 283 qkmASDGRPETPKHKQESRRDS--SGKVQGSDKRPDVAKHRHDGKPDKIRPeTPRKDGRPELSRDGHREEKH---KDRER 357
Cdd:PHA03307 155 ---AGASPAAVASDAASSRQAAlpLSSPEETARAPSSPPAEPPPSTPPAAA-SPRPPRRSSPISASASSPAPapgRSAAD 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 358 DRERSSDGSKIRRPETPKSSSRSEQDRPGRDRDRERDKERDKDRDKDRDRERKHRSESREHRDRRSPEHRSRPDSPRVKQ 437
Cdd:PHA03307 231 DAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPS 310
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 1878401830 438 ESRSGLDSGRPRTD-LKSPNSKEERRSSDGTRKSSDGSKLPPPDS 481
Cdd:PHA03307 311 SPRASSSSSSSRESsSSSTSSSSESSRGAAVSPGPSPSRSPSPSR 355
|
|
| PDS5 |
pfam20168 |
Sister chromatid cohesion protein PDS5 protein; This entry represents the Sister chromatid ... |
1323-1410 |
1.61e-04 |
|
Sister chromatid cohesion protein PDS5 protein; This entry represents the Sister chromatid cohesion protein PDS5. The large PDS5 molecule is exclusively alpha helical, composed of a large number of HEAT-like repeats and helical extensions/additions that deviate from the HEAT repeat pattern.
Pssm-ID: 466319 [Multi-domain] Cd Length: 1051 Bit Score: 47.97 E-value: 1.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 1323 AIAVRTKAMKCLSEVVAVDPSIlaRSDMQRGVHGRLMDNSTSVREAAVELLGRF-------VLSRPQLTEqyydmLIERI 1395
Cdd:pfam20168 297 SVAVRIAWVEAAKQILLNHPDL--RSEILEALKDRLLDPDEKVRLAAVKAIGDLdyetllhVVSEKLLKT-----LAERL 369
|
90
....*....|....*
gi 1878401830 1396 LDTGISVRKRVIKIL 1410
Cdd:pfam20168 370 RDKKPSVRKEALKTL 384
|
|
| PHA03309 |
PHA03309 |
transcriptional regulator ICP4; Provisional |
354-705 |
2.20e-04 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 165564 [Multi-domain] Cd Length: 2033 Bit Score: 47.54 E-value: 2.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 354 DRERDRERSSDGSKI---RRPETPKSSSRSEQDRpgrdrdrerdkerdkdRDKDRDRERKHRSESREHRDRR-SPEHRSR 429
Cdd:PHA03309 1545 DRHADRRRSTKGPQRpggKRPRSSSSSSSASHDR----------------SPSSSSRRRDGRPSSRRRPSRRmSARPPSR 1608
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 430 PDSPRVKQES-RSGLDSGRPRTDLKSPNSKEerrssdgtrksSDGSKLPPPDSragefpdflLGGKSGALKNFVIPKLKR 508
Cdd:PHA03309 1609 PPAAVILRASwRYAEEVAREMLDAAASRFDE-----------ADGEDPLPPAA---------CGGKPIAPETLVALCEQR 1668
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 509 DKDGNAEPRRP----GENWSQPR---VKLERLGLVEDISKRSK----------PVVVLQKLSLDEVQKIIKERHGTS--S 569
Cdd:PHA03309 1669 GRGPTSLPRAPtprsGEALAAPRrsgAKDPRQGQYCPSARRSEaphspsprdvALRLLERQQELNRQLLLELRRGSCeiS 1748
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 570 KSGKNRPSFGK------SSKGGIDESVFKELPPHLLAEIEStmplcERVKMNKRKRSTAN--------EKPKYAEVSSDE 635
Cdd:PHA03309 1749 PSPRRRDAEGRrfgcrqDDDDGYDYEGGRESPERVLGRRQS-----RRDSVPVRRRSGAAncggrwmiSAGRSSSSSSSS 1823
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1878401830 636 DTESESAPKRSKKDRDRDRDRAWEHEDKKISGERRRSGGYSEGRRGSGSRYR---------DHSPDDSGNETPPPSMTD 705
Cdd:PHA03309 1824 SSSSSSSPSSRPSRSATPSLSPSPSPPRRAPVDRSRSGRRRERDRPSANPFRwaprqrsraDHSPDGTAPGDAPLNLED 1902
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
2915-3001 |
2.29e-04 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 47.63 E-value: 2.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 2915 ATRAFFRYGGEAQMRFPSAMSAPSNLGPLLGSPVPGSPLPVGSPFPNPSFLATPAP-GMMPPSVSTPFIPATPMSPGSAA 2993
Cdd:PHA03247 2667 ARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPpGPAAARQASPALPAAPAPPAVPA 2746
|
....*...
gi 1878401830 2994 MPAMSSGP 3001
Cdd:PHA03247 2747 GPATPGGP 2754
|
|
| TCP |
pfam03634 |
TCP family transcription factor; This is a family of TCP plant transcription factors. TCP ... |
263-362 |
3.08e-04 |
|
TCP family transcription factor; This is a family of TCP plant transcription factors. TCP proteins were named after the first characterized members (TB1, CYC and PCFs) and they are involved in multiple developmental control pathways. This region contains a DNA binding basic-Helix-Loop-Helix (bHLP) structure.
Pssm-ID: 460998 Cd Length: 152 Bit Score: 43.87 E-value: 3.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 263 SKTDEELQRAAdgRPEVIKQqkMASDGRPETPKHKQESRRDSSGKVQGSDKRPDVAKHRHDGKP-------DKIRPETPR 335
Cdd:pfam03634 44 SKTIEWLLQQA--KPAIKEL--TGTGTIPANFSSLSISLRSSGESVSGIDEQAVALLNFHSTNQnsarkkgQNMKSKKSK 119
|
90 100
....*....|....*....|....*..
gi 1878401830 336 KDGRPELSRDGHREEKHKDRERDRERS 362
Cdd:pfam03634 120 GSSKLSASRSLAKESREKARARARERT 146
|
|
| PTZ00449 |
PTZ00449 |
104 kDa microneme/rhoptry antigen; Provisional |
276-627 |
5.23e-04 |
|
104 kDa microneme/rhoptry antigen; Provisional
Pssm-ID: 185628 [Multi-domain] Cd Length: 943 Bit Score: 46.22 E-value: 5.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 276 RPEVIKQQKmaSDGRPETPKHKQESRRDSSGKVQGSDKRPDVAKHRHDGKpdkiRPETPRKDGRPelsrdghreekhkdr 355
Cdd:PTZ00449 578 KPEFPKDPK--HPKDPEEPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPK----RPESPKSPKRP--------------- 636
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 356 erdrERSSDGSKIRRPETPKSSSRSEQDR-PGRDRDRERDKERDKDRDKDRDRERKHRSESREHRDRRSPEHRSRPDSPR 434
Cdd:PTZ00449 637 ----PPPQRPSSPERPEGPKIIKSPKPPKsPKPPFDPKFKEKFYDDYLDAAAKSKETKTTVVLDESFESILKETLPETPG 712
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 435 VKQESRSGLDSGRPRTdlksPNSKEERRSSDGTRKSSDGSKLPPPDSRAGEF----PDFLLGGksgalknfVIPKLKRDK 510
Cdd:PTZ00449 713 TPFTTPRPLPPKLPRD----EEFPFEPIGDPDAEQPDDIEFFTPPEEERTFFhetpADTPLPD--------ILAEEFKEE 780
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 511 DGNAEPRRPGENWSQPRVKLERlglvEDISKRSKPVVVLQKLSLDEVQKIIKERH---GTSSKSGKNRPSFGKSSKgGID 587
Cdd:PTZ00449 781 DIHAETGEPDEAMKRPDSPSEH----EDKPPGDHPSLPKKRHRLDGLALSTTDLEsdaGRIAKDASGKIVKLKRSK-SFD 855
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1878401830 588 ESVFKELPPHLLAEI--------------ESTMPLCER-----------VKMNKRKRSTANEKPK 627
Cdd:PTZ00449 856 DLTTVEEAEEMGAEArkivvdddgteaddEDTHPPEEKhksevrrrrppKKPSKPKKPSKPKKPK 920
|
|
| PDS5 |
cd19953 |
Sister chromatid cohesion protein PDS5; Pds5 plays a crucial role in sister chromatid cohesion. ... |
1324-1422 |
7.27e-04 |
|
Sister chromatid cohesion protein PDS5; Pds5 plays a crucial role in sister chromatid cohesion. Together with WapI and Scc3, it is involved in the release of the cohesin complex from chromosomes during S phase. The core of the cohesin complex consists of a coiled-coiled heterodimer of Smc1 and Smc30, together with Scc1 (also called kleisin). Pds5 interacts with Scc1 via a conserved patch on the surface of its heat repeats. Pds5 also promotes the acetylation of Smc3 that protects cohesin from releasing activity in G2 phase.
Pssm-ID: 410996 [Multi-domain] Cd Length: 630 Bit Score: 45.59 E-value: 7.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 1324 IAVRTKAMKCLSEVVAVDPS-ILARsdmqrgVH--------GRLMDNSTSVREAAVELLGRFVLSRPQLTEQYYDMLIER 1394
Cdd:cd19953 259 VDVRLLATKLLGKMFAEKGSaGFAQ------TYpslwkeflGRFNDKSPEVRLAWVESAKHILLNHPDLAEDILEALKKR 332
|
90 100
....*....|....*....|....*...
gi 1878401830 1395 ILDTGISVRKRVIKILRDICLEQPTFNK 1422
Cdd:cd19953 333 LLDPDEKVRLAAVKAICDLAYEDLLHKV 360
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
2926-3002 |
8.05e-04 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 45.70 E-value: 8.05e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1878401830 2926 AQMRFPSAMSAPSNLGPLLGSPVPGSPLPVGSPfPNPSFLATPAPGMMPPSVSTPFIPATPMSPGSAAMPAMSSGPE 3002
Cdd:PHA03247 2728 ARQASPALPAAPAPPAVPAGPATPGGPARPARP-PTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWD 2803
|
|
| U2AF_lg |
TIGR01642 |
U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of ... |
330-455 |
3.65e-03 |
|
U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi.
Pssm-ID: 273727 [Multi-domain] Cd Length: 509 Bit Score: 42.96 E-value: 3.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 330 RPETPRKDGRPELSRDGHR-EEKHKDRERDRERSSDGSKIRRPETPKSSSRSeQDRPGRDRDRERDKERDKDRDKDRDRE 408
Cdd:TIGR01642 1 RDEEPDREREKSRGRDRDRsSERPRRRSRDRSRFRDRHRRSRERSYREDSRP-RDRRRYDSRSPRSLRYSSVRRSRDRPR 79
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 1878401830 409 RKHRSESREHRDRRSPEHRSRPDSPRVKQESRSGLDSGRPRTDLKSP 455
Cdd:TIGR01642 80 RRSRSVRSIEQHRRRLRDRSPSNQWRKDDKKRSLWDIKPPGYELVTA 126
|
|
| SF-CC1 |
TIGR01622 |
splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors ... |
313-461 |
3.75e-03 |
|
splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors including the Pad-1 protein (N. crassa), CAPER (M. musculus) and CC1.3 (H.sapiens). These proteins are characterized by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 H. sapiens paralogs, two) RNA recognition domains (rrm: pfam00706). These splicing factors are closely related to the U2AF splicing factor family (TIGR01642). A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed.
Pssm-ID: 273721 [Multi-domain] Cd Length: 494 Bit Score: 42.98 E-value: 3.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878401830 313 KRPDVAKHRHDGKpDKIRPETPRKDGRPELSRDGHREeKHKDRERDRERSSDGSKIRRPEtpkssSRSEQDRPgrdrdre 392
Cdd:TIGR01622 1 RYRDRERERLRDS-SSAGDRDRRRDKGRERSRDRSRD-RERSRSRRRDRHRDRDYYRGRE-----RRSRSRRP------- 66
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1878401830 393 rdkerdkdrdkdrdrerKHRSESREHRDRRSPEHRSRPDSprvkqeSRSGLDSGRPRTDLKSPNSKEER 461
Cdd:TIGR01622 67 -----------------NRRYRPREKRRRRGDSYRRRRDD------RRSRREKPRARDGTPEPLTEDER 112
|
|
| |
