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Conserved domains on  [gi|1950281162|gb|KAG0632514|]
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hypothetical protein M758_1G333400 [Ceratodon purpureus]

Protein Classification

PH domain-containing protein( domain architecture ID 106840)

Pleckstrin homology (PH) domain-containing protein may be involved in targeting a protein to the appropriate cellular location or interacting with a binding partner

CATH:  2.30.29.30
Gene Ontology:  GO:0005515

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PH-like super family cl17171
Pleckstrin homology-like domain; The PH-like family includes the PH domain, both the Shc-like ...
20-51 1.14e-13

Pleckstrin homology-like domain; The PH-like family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.


The actual alignment was detected with superfamily member cd13228:

Pssm-ID: 473070  Cd Length: 120  Bit Score: 59.49  E-value: 1.14e-13
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1950281162  20 VLFQVKECYVYMIPPRKSAASYKADEWDINKW 51
Cdd:cd13228     2 VLLVKPEVYVYRIPPRASAAGYRAADWGLEKP 33
 
Name Accession Description Interval E-value
PHear_NECAP cd13228
NECAP (adaptin-ear-binding coat-associated protein) Plextrin Homology (PH) fold with ear-like ...
20-51 1.14e-13

NECAP (adaptin-ear-binding coat-associated protein) Plextrin Homology (PH) fold with ear-like function (PHear) domain; NECAPs are alpha-ear-binding proteins that enrich on clathrin-coated vesicles (CCVs). NECAP 1 is expressed in brain and non-neuronal tissues and cells while NECAP 2 is ubiquitously expressed. The PH-like domain of NECAPs is a protein-binding interface that mimics the FxDxF motif binding properties of the alpha-ear and is called PHear (PH fold with ear-like function) domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 270048  Cd Length: 120  Bit Score: 59.49  E-value: 1.14e-13
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1950281162  20 VLFQVKECYVYMIPPRKSAASYKADEWDINKW 51
Cdd:cd13228     2 VLLVKPEVYVYRIPPRASAAGYRAADWGLEKP 33
DUF1681 pfam07933
Protein of unknown function (DUF1681); This family is composed of sequences derived from a ...
18-51 1.47e-10

Protein of unknown function (DUF1681); This family is composed of sequences derived from a number of hypothetical eukaryotic proteins of unknown function.


Pssm-ID: 462320  Cd Length: 157  Bit Score: 52.12  E-value: 1.47e-10
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1950281162  18 ELVLFQVKECYVYMIPPRKSAASYKADEWDINKW 51
Cdd:pfam07933   2 ERVLFVAPEVHVYKIPPRTSNKGYRAADWTLANP 35
 
Name Accession Description Interval E-value
PHear_NECAP cd13228
NECAP (adaptin-ear-binding coat-associated protein) Plextrin Homology (PH) fold with ear-like ...
20-51 1.14e-13

NECAP (adaptin-ear-binding coat-associated protein) Plextrin Homology (PH) fold with ear-like function (PHear) domain; NECAPs are alpha-ear-binding proteins that enrich on clathrin-coated vesicles (CCVs). NECAP 1 is expressed in brain and non-neuronal tissues and cells while NECAP 2 is ubiquitously expressed. The PH-like domain of NECAPs is a protein-binding interface that mimics the FxDxF motif binding properties of the alpha-ear and is called PHear (PH fold with ear-like function) domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 270048  Cd Length: 120  Bit Score: 59.49  E-value: 1.14e-13
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1950281162  20 VLFQVKECYVYMIPPRKSAASYKADEWDINKW 51
Cdd:cd13228     2 VLLVKPEVYVYRIPPRASAAGYRAADWGLEKP 33
DUF1681 pfam07933
Protein of unknown function (DUF1681); This family is composed of sequences derived from a ...
18-51 1.47e-10

Protein of unknown function (DUF1681); This family is composed of sequences derived from a number of hypothetical eukaryotic proteins of unknown function.


Pssm-ID: 462320  Cd Length: 157  Bit Score: 52.12  E-value: 1.47e-10
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1950281162  18 ELVLFQVKECYVYMIPPRKSAASYKADEWDINKW 51
Cdd:pfam07933   2 ERVLFVAPEVHVYKIPPRTSNKGYRAADWTLANP 35
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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