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Conserved domains on  [gi|2076540296|gb|KAG8502856|]
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hypothetical protein CXB51_000681 [Gossypium anomalum]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03218 super family cl33664
maturation of RBCL 1; Provisional
 230-732 7.84e-36

maturation of RBCL 1; Provisional


The actual alignment was detected with superfamily member PLN03218:

Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 147.72  E-value: 7.84e-36
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  230 PNVATFNILINVLCVEGKLENAVYLLRKMENSGYVPTIVTYNTLLHWFCKKGRYKSAFELIDRMGSKGIEADVCTYNMLI 309
Cdd:PLN03218   435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  310 DDLCRNDRSAKAYLLLKKMRKRRISPNAITYNTLINGFVKVesiGVATRIFDEMAYFN-----LSPNVATYNALIEGHSN 384
Cdd:PLN03218   515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQS---GAVDRAFDVLAEMKaethpIDPDHITVGALMKACAN 591

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  385 EGNFEEALRLMDMMEKVGLRLNEVSYGALLNGLSKHGKFDlvrrffermrtngmgFGCIPYTEMIdglckkglfdeavqm 464
Cdd:PLN03218   592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWD---------------FALSIYDDMK--------------- 641

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  465 fhemfEEGVAPDIITFSVLINGFYQAGNIKCVKEIICKMYRAGFRPNKVIYSTLIYNSCKMGLVTEALKIYRIMNCSGHA 544
Cdd:PLN03218   642 -----KKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLR 716

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  545 ADHFTCNTLVASLCRDGKVREAEEFMRHMSRIGPNPNSITFDCVISGYGNLGDGLKAFSLFDEMVKLGNTPSFFTYGSLL 624
Cdd:PLN03218   717 PTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT 796

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  625 kGLCKggnlveaKKFLNKLhyipsAVDNVVYnTILAGTCKSGNMWESVAL--FEEMVLFGVLPDSYTYTILLnGLCRKGK 702
Cdd:PLN03218   797 -GLCL-------RRFEKAC-----ALGEPVV-SFDSGRPQIENKWTSWALmvYRETISAGTLPTMEVLSQVL-GCLQLPH 861

                          490       500       510
                   ....*....|....*....|....*....|..
gi 2076540296  703 VAAALLFLgkLMDKGV-FTPNQVTYTC-LVDG 732
Cdd:PLN03218   862 DATLRNRL--IENLGIsADSQKQSNLStLVDG 891
PLN03218 super family cl33664
maturation of RBCL 1; Provisional
 682-1017 1.60e-28

maturation of RBCL 1; Provisional


The actual alignment was detected with superfamily member PLN03218:

Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 124.22  E-value: 1.60e-28
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  682 GVLPDSYTYTILLNGLCRKGKVAAALLFLGKLMDKGVfTPNQVTYTCLVDGLFKAGQ-SKA--AYffikrwskkagmldv 758
Cdd:PLN03218   467 GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGV-EANVHTFGALIDGCARAGQvAKAfgAY--------------- 530

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  759 GIkilkkMVSEGVEVDRFTFNMLISKCCERGDTRKTFDLVNAMNFLG--IFPDAETLNALVIGLNRnlALQ-----ESHI 831
Cdd:PLN03218   531 GI-----MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAEThpIDPDHITVGALMKACAN--AGQvdrakEVYQ 603

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  832 VLHEMAHKGYLpkgKQYITLINAMCRARNLQAALELKDEMTSLGITSPDVAESAIVRGLALSGKVEEAILVLDRMLRKQL 911
Cdd:PLN03218   604 MIHEYNIKGTP---EVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  912 VPTVATFTTLMHMLCKESNIGEALKLRNKMQLYGLKLDVVAYNVIISGLCANGDIAAAFELYQEMKQNGLWPNATTYTVL 991
Cdd:PLN03218   681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL 760

                          330       340
                   ....*....|....*....|....*.
gi 2076540296  992 VDALLIEGsNLSTGDVLLEDLKGRGI 1017
Cdd:PLN03218   761 LVASERKD-DADVGLDLLSQAKEDGI 785
AvrRpt-cleavage pfam05627
Cleavage site for pathogenic type III effector avirulence factor Avr; This domain is conserved ...
 1074-1109 9.52e-20

Cleavage site for pathogenic type III effector avirulence factor Avr; This domain is conserved in small families of otherwise unrelated proteins in both mono-cots and di-cots, suggesting that it has a conserved, plant-specific function. It is found both in the plant RIN4 (resistance R membrane-bound host-target protein) where it appears to contribute to the binding of the protein to both RCS (AvrRpt2 auto-cleavage site) and AvrB, the virulence factor from the infecting bacterium. The cleavage site for the AvrRpt2 avirulence protein would appear to be the sequence motifs VPQFGDW and LPKFGEW, both of which are highly conserved within the domain.


:

Pssm-ID: 398967  Cd Length: 36  Bit Score: 83.21  E-value: 9.52e-20
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 2076540296 1074 EKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKT 1109
Cdd:pfam05627    1 ERGRAVPKFGEWDESNPASADGFTVIFNKVREEKKT 36
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 195-243 6.70e-09

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


:

Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 52.75  E-value: 6.70e-09
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 2076540296  195 PSVYTCNMMLGSMVKDGRVCSVWEFFKELLDLKICPNVATFNILINVLC 243
Cdd:pfam13041    1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLC 49
PPR_2 super family cl38385
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 168-209 1.12e-05

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


The actual alignment was detected with superfamily member pfam13041:

Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 43.51  E-value: 1.12e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 2076540296  168 LIRVYLKDGMTDNALETFNLMRFRGFKPSVYTCNMMLGSMVK 209
Cdd:pfam13041    9 LINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
 
Name Accession Description Interval E-value
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 230-732 7.84e-36

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 147.72  E-value: 7.84e-36
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  230 PNVATFNILINVLCVEGKLENAVYLLRKMENSGYVPTIVTYNTLLHWFCKKGRYKSAFELIDRMGSKGIEADVCTYNMLI 309
Cdd:PLN03218   435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  310 DDLCRNDRSAKAYLLLKKMRKRRISPNAITYNTLINGFVKVesiGVATRIFDEMAYFN-----LSPNVATYNALIEGHSN 384
Cdd:PLN03218   515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQS---GAVDRAFDVLAEMKaethpIDPDHITVGALMKACAN 591

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  385 EGNFEEALRLMDMMEKVGLRLNEVSYGALLNGLSKHGKFDlvrrffermrtngmgFGCIPYTEMIdglckkglfdeavqm 464
Cdd:PLN03218   592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWD---------------FALSIYDDMK--------------- 641

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  465 fhemfEEGVAPDIITFSVLINGFYQAGNIKCVKEIICKMYRAGFRPNKVIYSTLIYNSCKMGLVTEALKIYRIMNCSGHA 544
Cdd:PLN03218   642 -----KKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLR 716

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  545 ADHFTCNTLVASLCRDGKVREAEEFMRHMSRIGPNPNSITFDCVISGYGNLGDGLKAFSLFDEMVKLGNTPSFFTYGSLL 624
Cdd:PLN03218   717 PTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT 796

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  625 kGLCKggnlveaKKFLNKLhyipsAVDNVVYnTILAGTCKSGNMWESVAL--FEEMVLFGVLPDSYTYTILLnGLCRKGK 702
Cdd:PLN03218   797 -GLCL-------RRFEKAC-----ALGEPVV-SFDSGRPQIENKWTSWALmvYRETISAGTLPTMEVLSQVL-GCLQLPH 861

                          490       500       510
                   ....*....|....*....|....*....|..
gi 2076540296  703 VAAALLFLgkLMDKGV-FTPNQVTYTC-LVDG 732
Cdd:PLN03218   862 DATLRNRL--IENLGIsADSQKQSNLStLVDG 891
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 682-1017 1.60e-28

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 124.22  E-value: 1.60e-28
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  682 GVLPDSYTYTILLNGLCRKGKVAAALLFLGKLMDKGVfTPNQVTYTCLVDGLFKAGQ-SKA--AYffikrwskkagmldv 758
Cdd:PLN03218   467 GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGV-EANVHTFGALIDGCARAGQvAKAfgAY--------------- 530

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  759 GIkilkkMVSEGVEVDRFTFNMLISKCCERGDTRKTFDLVNAMNFLG--IFPDAETLNALVIGLNRnlALQ-----ESHI 831
Cdd:PLN03218   531 GI-----MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAEThpIDPDHITVGALMKACAN--AGQvdrakEVYQ 603

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  832 VLHEMAHKGYLpkgKQYITLINAMCRARNLQAALELKDEMTSLGITSPDVAESAIVRGLALSGKVEEAILVLDRMLRKQL 911
Cdd:PLN03218   604 MIHEYNIKGTP---EVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  912 VPTVATFTTLMHMLCKESNIGEALKLRNKMQLYGLKLDVVAYNVIISGLCANGDIAAAFELYQEMKQNGLWPNATTYTVL 991
Cdd:PLN03218   681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL 760

                          330       340
                   ....*....|....*....|....*.
gi 2076540296  992 VDALLIEGsNLSTGDVLLEDLKGRGI 1017
Cdd:PLN03218   761 LVASERKD-DADVGLDLLSQAKEDGI 785
AvrRpt-cleavage pfam05627
Cleavage site for pathogenic type III effector avirulence factor Avr; This domain is conserved ...
 1074-1109 9.52e-20

Cleavage site for pathogenic type III effector avirulence factor Avr; This domain is conserved in small families of otherwise unrelated proteins in both mono-cots and di-cots, suggesting that it has a conserved, plant-specific function. It is found both in the plant RIN4 (resistance R membrane-bound host-target protein) where it appears to contribute to the binding of the protein to both RCS (AvrRpt2 auto-cleavage site) and AvrB, the virulence factor from the infecting bacterium. The cleavage site for the AvrRpt2 avirulence protein would appear to be the sequence motifs VPQFGDW and LPKFGEW, both of which are highly conserved within the domain.


Pssm-ID: 398967  Cd Length: 36  Bit Score: 83.21  E-value: 9.52e-20
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 2076540296 1074 EKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKT 1109
Cdd:pfam05627    1 ERGRAVPKFGEWDESNPASADGFTVIFNKVREEKKT 36
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 265-314 1.61e-15

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 71.63  E-value: 1.61e-15
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 2076540296  265 PTIVTYNTLLHWFCKKGRYKSAFELIDRMGSKGIEADVCTYNMLIDDLCR 314
Cdd:pfam13041    1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 949-995 1.66e-14

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 68.54  E-value: 1.66e-14
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2076540296  949 DVVAYNVIISGLCANGDIAAAFELYQEMKQNGLWPNATTYTVLVDAL 995
Cdd:pfam13041    2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 195-243 6.70e-09

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 52.75  E-value: 6.70e-09
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 2076540296  195 PSVYTCNMMLGSMVKDGRVCSVWEFFKELLDLKICPNVATFNILINVLC 243
Cdd:pfam13041    1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLC 49
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 445-477 7.02e-07

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 46.68  E-value: 7.02e-07
                           10        20        30
                   ....*....|....*....|....*....|...
gi 2076540296  445 YTEMIDGLCKKGLFDEAVQMFHEMFEEGVAPDI 477
Cdd:TIGR00756    3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 951-985 2.66e-06

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 44.75  E-value: 2.66e-06
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 2076540296  951 VAYNVIISGLCANGDIAAAFELYQEMKQNGLWPNA 985
Cdd:TIGR00756    1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 168-209 1.12e-05

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 43.51  E-value: 1.12e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 2076540296  168 LIRVYLKDGMTDNALETFNLMRFRGFKPSVYTCNMMLGSMVK 209
Cdd:pfam13041    9 LINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 120-332 2.09e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 41.25  E-value: 2.09e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  120 ILVRARMYDSAKSLLRQLCKLAvgsrfvfgglmdtyslcNSNPSVFDLLIRVYLKDGMTDNALETFNLMRFRGFKPSVYT 199
Cdd:COG2956     85 DYLKAGLLDRAEELLEKLLELD-----------------PDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAY 147

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  200 CNMMLGSMvKDGRVCSVWEFFKELldLKICPN-VATFNILINVLCVEGKLENAVYLLRKME--NSGYVPtivTYNTLLHW 276
Cdd:COG2956    148 CELAELYL-EQGDYDEAIEALEKA--LKLDPDcARALLLLAELYLEQGDYEEAIAALERALeqDPDYLP---ALPRLAEL 221

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 2076540296  277 FCKKGRYKSAFELIDRMGSKGIEADVctYNMLIDDLCRNDRSAKAYLLLKKMRKRR 332
Cdd:COG2956    222 YEKLGDPEEALELLRKALELDPSDDL--LLALADLLERKEGLEAALALLERQLRRH 275
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 164-197 5.66e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 35.51  E-value: 5.66e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 2076540296  164 VFDLLIRVYLKDGMTDNALETFNLMRFRGFKPSV 197
Cdd:TIGR00756    2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
 
Name Accession Description Interval E-value
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 230-732 7.84e-36

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 147.72  E-value: 7.84e-36
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  230 PNVATFNILINVLCVEGKLENAVYLLRKMENSGYVPTIVTYNTLLHWFCKKGRYKSAFELIDRMGSKGIEADVCTYNMLI 309
Cdd:PLN03218   435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  310 DDLCRNDRSAKAYLLLKKMRKRRISPNAITYNTLINGFVKVesiGVATRIFDEMAYFN-----LSPNVATYNALIEGHSN 384
Cdd:PLN03218   515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQS---GAVDRAFDVLAEMKaethpIDPDHITVGALMKACAN 591

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  385 EGNFEEALRLMDMMEKVGLRLNEVSYGALLNGLSKHGKFDlvrrffermrtngmgFGCIPYTEMIdglckkglfdeavqm 464
Cdd:PLN03218   592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWD---------------FALSIYDDMK--------------- 641

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  465 fhemfEEGVAPDIITFSVLINGFYQAGNIKCVKEIICKMYRAGFRPNKVIYSTLIYNSCKMGLVTEALKIYRIMNCSGHA 544
Cdd:PLN03218   642 -----KKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLR 716

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  545 ADHFTCNTLVASLCRDGKVREAEEFMRHMSRIGPNPNSITFDCVISGYGNLGDGLKAFSLFDEMVKLGNTPSFFTYGSLL 624
Cdd:PLN03218   717 PTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT 796

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  625 kGLCKggnlveaKKFLNKLhyipsAVDNVVYnTILAGTCKSGNMWESVAL--FEEMVLFGVLPDSYTYTILLnGLCRKGK 702
Cdd:PLN03218   797 -GLCL-------RRFEKAC-----ALGEPVV-SFDSGRPQIENKWTSWALmvYRETISAGTLPTMEVLSQVL-GCLQLPH 861

                          490       500       510
                   ....*....|....*....|....*....|..
gi 2076540296  703 VAAALLFLgkLMDKGV-FTPNQVTYTC-LVDG 732
Cdd:PLN03218   862 DATLRNRL--IENLGIsADSQKQSNLStLVDG 891
PLN03077 PLN03077
Protein ECB2; Provisional
 168-748 3.98e-29

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 125.73  E-value: 3.98e-29
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  168 LIRVYLKDGMTDNALETFNLMRFRgfkpSVYTCNMMLGSMVKDGrvcsvweFFKELLDL-------KICPNVATFNILIN 240
Cdd:PLN03077   127 MLSMFVRFGELVHAWYVFGKMPER----DLFSWNVLVGGYAKAG-------YFDEALCLyhrmlwaGVRPDVYTFPCVLR 195

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  241 VlC------VEGKlENAVYLLRkmenSGYVPTIVTYNTLLHWFCKKGRYKSAFELIDRMGSKgieaDVCTYNMLIDDLCR 314
Cdd:PLN03077   196 T-CggipdlARGR-EVHAHVVR----FGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFE 265

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  315 NDRSAKAYLLLKKMRKRRISPNAITYNTLINGFVKVESIGVATRIFDEMAYFNLSPNVATYNALIEGHSNEGNFEEAlrl 394
Cdd:PLN03077   266 NGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEA--- 342

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  395 mdmmEKVglrlnevsygallnglskhgkfdlvrrfFERMRTNGMgfgcIPYTEMIDGLCKKGLFDEAVQMFHEMFEEGVA 474
Cdd:PLN03077   343 ----EKV----------------------------FSRMETKDA----VSWTAMISGYEKNGLPDKALETYALMEQDNVS 386

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  475 PDIITFSVLINGFYQAGNIKCVKEIICKMYRAGFRPNKVIYSTLI--YNSCKMglVTEALKIYRIMNcsghAADHFTCNT 552
Cdd:PLN03077   387 PDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIemYSKCKC--IDKALEVFHNIP----EKDVISWTS 460

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  553 LVASLCRDGKVREAEEFMRHMsRIGPNPNSITFDCVISGYGNLGDGLKAFSLFDEMVKLGNTPSFFTYGSLLKGLCKGGN 632
Cdd:PLN03077   461 IIAGLRLNNRCFEALIFFRQM-LLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGR 539

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  633 LVEAKKFLNKlhyipSAVDNVVYNTILAGTCKSGNMWESVALFEEMVLFGVLPDSYTYTILLNGLCRKGKVAAALLFLGK 712
Cdd:PLN03077   540 MNYAWNQFNS-----HEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHS 614

                          570       580       590
                   ....*....|....*....|....*....|....*.
gi 2076540296  713 LMDKGVFTPNQVTYTCLVDGLFKAGQSKAAYFFIKR 748
Cdd:PLN03077   615 MEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINK 650
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 682-1017 1.60e-28

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 124.22  E-value: 1.60e-28
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  682 GVLPDSYTYTILLNGLCRKGKVAAALLFLGKLMDKGVfTPNQVTYTCLVDGLFKAGQ-SKA--AYffikrwskkagmldv 758
Cdd:PLN03218   467 GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGV-EANVHTFGALIDGCARAGQvAKAfgAY--------------- 530

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  759 GIkilkkMVSEGVEVDRFTFNMLISKCCERGDTRKTFDLVNAMNFLG--IFPDAETLNALVIGLNRnlALQ-----ESHI 831
Cdd:PLN03218   531 GI-----MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAEThpIDPDHITVGALMKACAN--AGQvdrakEVYQ 603

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  832 VLHEMAHKGYLpkgKQYITLINAMCRARNLQAALELKDEMTSLGITSPDVAESAIVRGLALSGKVEEAILVLDRMLRKQL 911
Cdd:PLN03218   604 MIHEYNIKGTP---EVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  912 VPTVATFTTLMHMLCKESNIGEALKLRNKMQLYGLKLDVVAYNVIISGLCANGDIAAAFELYQEMKQNGLWPNATTYTVL 991
Cdd:PLN03218   681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL 760

                          330       340
                   ....*....|....*....|....*.
gi 2076540296  992 VDALLIEGsNLSTGDVLLEDLKGRGI 1017
Cdd:PLN03218   761 LVASERKD-DADVGLDLLSQAKEDGI 785
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 270-777 1.11e-27

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 121.52  E-value: 1.11e-27
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  270 YNTLLhwfcKKGRYKSAFELIDRMGSKGIEADVCTYNmliddlcrndrsAKAYlllKKMRKRRISPNAITYNTLINgfvk 349
Cdd:PLN03218   377 YNRLL----RDGRIKDCIDLLEDMEKRGLLDMDKIYH------------AKFF---KACKKQRAVKEAFRFAKLIR---- 433

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  350 vesigvatrifdemayfnlSPNVATYNALIEGHSNEGNFEEALRLMDMMEKVGLRLNEVSYGALLNGLSKHGKFDLVRRF 429
Cdd:PLN03218   434 -------------------NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV 494

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  430 FERMRTNGMGFGCIPYTEMIDGLCKKGLFDEAVQMFHEMFEEGVAPDIITFSVLINGFYQAGNIKCVKEIICKMyRAG-- 507
Cdd:PLN03218   495 FHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEM-KAEth 573

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  508 -FRPNKVIYSTLIYNSCKMGLVTEALKIYRIM---NCSGHAAdhftCNTLVASLC-RDGKVREAEEFMRHMSRIGPNPNS 582
Cdd:PLN03218   574 pIDPDHITVGALMKACANAGQVDRAKEVYQMIheyNIKGTPE----VYTIAVNSCsQKGDWDFALSIYDDMKKKGVKPDE 649

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  583 ITFDCVISGYGNLGDGLKAFSLFDEMVKLGNTPSFFTYGSLLKGLCKGGNLVEAKKFLNKLHYIPSAVDNVVYNTILAGT 662
Cdd:PLN03218   650 VFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITAL 729

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  663 CKSGNMWESVALFEEMVLFGVLPDSYTYTILLNGLCRKGKVAAALLFLGKLMDKGVfTPNQVTYTCLVdGLFKAGQSKAA 742
Cdd:PLN03218   730 CEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGI-KPNLVMCRCIT-GLCLRRFEKAC 807

                          490       500       510
                   ....*....|....*....|....*....|....*
gi 2076540296  743 YFFIKRWSKKAGmldvGIKILKKMVSEGVEVDRFT 777
Cdd:PLN03218   808 ALGEPVVSFDSG----RPQIENKWTSWALMVYRET 838
PLN03077 PLN03077
Protein ECB2; Provisional
 271-949 2.65e-27

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 119.95  E-value: 2.65e-27
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  271 NTLLHWFCKKGRYKSAFELIDRMGSKGIEADVCTYNMLIDdLCRNDRSAKAYLLLKKMRKRRISPNAITY-NTLINGFVK 349
Cdd:PLN03077    55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFR-LCEWKRAVEEGSRVCSRALSSHPSLGVRLgNAMLSMFVR 133

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  350 VESIGVATRIFDEMAyfnlSPNVATYNALIEGHSNEGNFEEALRLMDMMEKVGLR------------------------- 404
Cdd:PLN03077   134 FGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRpdvytfpcvlrtcggipdlargrev 209

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  405 -LNEVSYG---------ALLNGLSKHGKFDLVRRFFERMRTNGmgfgCIPYTEMIDGLCKKGLFDEAVQMFHEMFEEGVA 474
Cdd:PLN03077   210 hAHVVRFGfeldvdvvnALITMYVKCGDVVSARLVFDRMPRRD----CISWNAMISGYFENGECLEGLELFFTMRELSVD 285

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  475 PDIITFSVLINGFYQAGNIKCVKEIICKMYRAGFRPNKVIYSTLIYNSCKMGLVTEALKIYRIMNCSghaaDHFTCNTLV 554
Cdd:PLN03077   286 PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMI 361

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  555 ASLCRDGKVREAEEFMRHMSRIGPNPNSITFDCVISGYGNLGDGLKAFSLFDEMVKLGNTPSFFTYGSLLKGLCKGGNLv 634
Cdd:PLN03077   362 SGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCI- 440

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  635 eaKKFLNKLHYIPSAvDNVVYNTILAGTCKSGNMWESVALFEEMVLfGVLPDSYTYTILLNGLCRKGKVAAALLFLGKLM 714
Cdd:PLN03077   441 --DKALEVFHNIPEK-DVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVL 516

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  715 DKGV----FTPNqvtytCLVDGLFKAGQSKAAyffikrWSKkagmldvgIKILKKMVSegvevdrfTFNMLISKCCERGD 790
Cdd:PLN03077   517 RTGIgfdgFLPN-----ALLDLYVRCGRMNYA------WNQ--------FNSHEKDVV--------SWNILLTGYVAHGK 569

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  791 TRKTFDLVNAMNFLGIFPDAETLNALVIGLNRNLALQESHIVLHEMAHK-GYLPKGKQYITLINAMCRARNLQAALELKD 869
Cdd:PLN03077   570 GSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKySITPNLKHYACVVDLLGRAGKLTEAYNFIN 649

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  870 EMTslgiTSPDVAE-SAIVRGLALSGKVEEAILVLDRMLrkQLVPTVATFTTLMHMLCKESNI-GEALKLRNKMQLYGLK 947
Cdd:PLN03077   650 KMP----ITPDPAVwGALLNACRIHRHVELGELAAQHIF--ELDPNSVGYYILLCNLYADAGKwDEVARVRKTMRENGLT 723


                   ..
gi 2076540296  948 LD 949
Cdd:PLN03077   724 VD 725
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 138-558 1.10e-24

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 111.89  E-value: 1.10e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  138 CKL--AVGSRFVFGGLMDTYSLcnsnpSVFDLLIRVYLKDGMTDNALETFNLMRFRGFKPS--VYTcnMMLGSMVKDGRV 213
Cdd:PLN03218   416 CKKqrAVKEAFRFAKLIRNPTL-----STFNMLMSVCASSQDIDGALRVLRLVQEAGLKADckLYT--TLISTCAKSGKV 488

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  214 CSVWEFFKELLDLKICPNVATFNILINVlCVegklenavyllrkmensgyvptivtyntllhwfcKKGRYKSAFELIDRM 293
Cdd:PLN03218   489 DAMFEVFHEMVNAGVEANVHTFGALIDG-CA----------------------------------RAGQVAKAFGAYGIM 533

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  294 GSKGIEADVCTYNMLIDDLCRNDRSAKAYLLLKKMRKRR--ISPNAITYNTLINGFVKVESIGVATRIFDEMAYFNLSPN 371
Cdd:PLN03218   534 RSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAEThpIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGT 613

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  372 VATYNALIEGHSNEGNFEEALRLMDMMEKVGLRLNEVSYGALLNGLSKHGKFDLVRRFFERMRTNGMGFGCIPYTEMIDG 451
Cdd:PLN03218   614 PEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGA 693

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  452 LCKKGLFDEAVQMFHEMFEEGVAPDIITFSVLINGFYQAGNIKCVKEIICKMYRAGFRPNKVIYSTLIYNSCKMGLVTEA 531
Cdd:PLN03218   694 CSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVG 773

                          410       420
                   ....*....|....*....|....*..
gi 2076540296  532 LKIYRIMNCSGHAADHFTCNTLVaSLC 558
Cdd:PLN03218   774 LDLLSQAKEDGIKPNLVMCRCIT-GLC 799
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 281-726 1.68e-22

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 104.18  E-value: 1.68e-22
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  281 GRYKSAFELIDRMGSKG-IEADVCTYNMLIDDLC--RNDRSAKAylLLKKMRKRRISPNAITYNTLINGFVKVESIGVAT 357
Cdd:PLN03081   101 GRHREALELFEILEAGCpFTLPASTYDALVEACIalKSIRCVKA--VYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDAR 178

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  358 RIFDEMAyfnlSPNVATYNALIEGHSNEGNFEEALRLMDMMEKVG-----------LR----LNEVSYG----------- 411
Cdd:PLN03081   179 RLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGsdaeprtfvvmLRasagLGSARAGqqlhccvlktg 254

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  412 ---------ALLNGLSKHGKFDLVRRFFERMRTNGMgfgcIPYTEMIDGLCKKGLFDEAVQMFHEMFEEGVAPDIITFSV 482
Cdd:PLN03081   255 vvgdtfvscALIDMYSKCGDIEDARCVFDGMPEKTT----VAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSI 330

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  483 LINGFYQAGNIKCVKEIICKMYRAGFRPNKVIYSTLIYNSCKMGLVTEALKIYRIMNcsghAADHFTCNTLVASLCRDGK 562
Cdd:PLN03081   331 MIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGR 406

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  563 VREAEEFMRHMSRIGPNPNSITFDCVISG--YGNLGDglKAFSLFDEMVK-LGNTPSFFTYGSLLKGLCKGGNLVEAKKF 639
Cdd:PLN03081   407 GTKAVEMFERMIAEGVAPNHVTFLAVLSAcrYSGLSE--QGWEIFQSMSEnHRIKPRAMHYACMIELLGREGLLDEAYAM 484

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  640 LNKLHYIPSAvdnVVYNTILAGTCKSGNMweSVALFEEMVLFGVLPDSY-TYTILLNGLCRKGKVAAALLFLGKLMDKGV 718
Cdd:PLN03081   485 IRRAPFKPTV---NMWAALLTACRIHKNL--ELGRLAAEKLYGMGPEKLnNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559


                   ....*...
gi 2076540296  719 FTPNQVTY 726
Cdd:PLN03081   560 SMHPACTW 567
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 610-992 4.36e-22

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 103.42  E-value: 4.36e-22
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  610 KLGNTPSFFTYGSLLKGLCKGGNLVEAKKFLNKLHYIPSAVDNVVYNTILAGTCKSGN---MWEsvaLFEEMVLFGVLPD 686
Cdd:PLN03218   430 KLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKvdaMFE---VFHEMVNAGVEAN 506

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  687 SYTYTILLNGLCRKGKVAAALLFLGKLMDKGVfTPNQVTYTCLVDGlfkAGQSkaayffikrwskkaGMLDVGIKILKKM 766
Cdd:PLN03218   507 VHTFGALIDGCARAGQVAKAFGAYGIMRSKNV-KPDRVVFNALISA---CGQS--------------GAVDRAFDVLAEM 568

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  767 VSEG--VEVDRFTFNMLISKCCERGDTRKTFDLVNAMNFLGI--FPDAET--LNALVIGLNRNLALQeshiVLHEMAHKG 840
Cdd:PLN03218   569 KAEThpIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIkgTPEVYTiaVNSCSQKGDWDFALS----IYDDMKKKG 644

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  841 YLPKGKQYITLINAMCRARNLQAALELKDEMTSLGITSPDVAESAIVRGLALSGKVEEAILVLDRMLRKQLVPTVATFTT 920
Cdd:PLN03218   645 VKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNA 724

                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2076540296  921 LMHMLCKESNIGEALKLRNKMQLYGLKLDVVAYNVIISGLCANGDIAAAFELYQEMKQNGLWPNATTYTVLV 992
Cdd:PLN03218   725 LITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT 796
AvrRpt-cleavage pfam05627
Cleavage site for pathogenic type III effector avirulence factor Avr; This domain is conserved ...
 1074-1109 9.52e-20

Cleavage site for pathogenic type III effector avirulence factor Avr; This domain is conserved in small families of otherwise unrelated proteins in both mono-cots and di-cots, suggesting that it has a conserved, plant-specific function. It is found both in the plant RIN4 (resistance R membrane-bound host-target protein) where it appears to contribute to the binding of the protein to both RCS (AvrRpt2 auto-cleavage site) and AvrB, the virulence factor from the infecting bacterium. The cleavage site for the AvrRpt2 avirulence protein would appear to be the sequence motifs VPQFGDW and LPKFGEW, both of which are highly conserved within the domain.


Pssm-ID: 398967  Cd Length: 36  Bit Score: 83.21  E-value: 9.52e-20
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 2076540296 1074 EKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKT 1109
Cdd:pfam05627    1 ERGRAVPKFGEWDESNPASADGFTVIFNKVREEKKT 36
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 449-911 3.16e-16

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 83.77  E-value: 3.16e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  449 IDGLCKKGLFDEAVQMFhEMFEEGVAPDI--ITFSVLINGFYQAGNIKCVKEIICKMYRAGFRPNKVIYSTLIYNSCKMG 526
Cdd:PLN03081    94 IEKLVACGRHREALELF-EILEAGCPFTLpaSTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCG 172

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  527 LVTEALKIYRIMNcsghAADHFTCNTLVASLCRDGKVREAEEFMRHMSRIGPNPNSITFDCVISGYGNLGDGLKAFSLFD 606
Cdd:PLN03081   173 MLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHC 248

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  607 EMVKLGNTPSFFTYGSLLKGLCKGGNLVEAKKFLNKLhyiPSAVdNVVYNTILAGTCKSGNMWESVALFEEMVLFGVLPD 686
Cdd:PLN03081   249 CVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM---PEKT-TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  687 SYTYTILLNGLCRKGKVAAALLFLGKLMDKGvFTPNQVTYTCLVDGLFKAGQSKAAYFFIKRWSKKA------------- 753
Cdd:PLN03081   325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTG-FPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNliswnaliagygn 403

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  754 -GMLDVGIKILKKMVSEGVEVDRFTFNMLISKCCERGDTRKTFDLVNAMN-FLGIFPDAETLNALVIGLNRNLALQESHI 831
Cdd:PLN03081   404 hGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSeNHRIKPRAMHYACMIELLGREGLLDEAYA 483

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  832 VLHEMAHKgylPKGKQYITLINAmCRA-RNLQAALELKDEMTSLGitsPDVAESAIVRgLAL---SGKVEEAILVLDRML 907
Cdd:PLN03081   484 MIRRAPFK---PTVNMWAALLTA-CRIhKNLELGRLAAEKLYGMG---PEKLNNYVVL-LNLynsSGRQAEAAKVVETLK 555


                   ....
gi 2076540296  908 RKQL 911
Cdd:PLN03081   556 RKGL 559
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 265-314 1.61e-15

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 71.63  E-value: 1.61e-15
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 2076540296  265 PTIVTYNTLLHWFCKKGRYKSAFELIDRMGSKGIEADVCTYNMLIDDLCR 314
Cdd:pfam13041    1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 168-534 1.79e-15

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 81.46  E-value: 1.79e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  168 LIRVYLKDGMTDNALETFNLMRFRgfkpSVYTCNMMLGSMVKDGRVCSVWEFFKEL------------------------ 223
Cdd:PLN03081   164 VLLMHVKCGMLIDARRLFDEMPER----NLASWGTIIGGLVDAGNYREAFALFREMwedgsdaeprtfvvmlrasaglgs 239

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  224 -----------LDLKICPNVATFNILINVLCVEGKLENAVYLLRKMENSgyvpTIVTYNTLLHWFCKKGRYKSAFELIDR 292
Cdd:PLN03081   240 aragqqlhccvLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK----TTVAWNSMLAGYALHGYSEEALCLYYE 315

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  293 MGSKGIEADVCTYNMLIDDLCR-----NDRSAKAYLLlkkmrkRRISPNAITYNT-LINGFVKVESIGVATRIFDEMAYf 366
Cdd:PLN03081   316 MRDSGVSIDQFTFSIMIRIFSRlalleHAKQAHAGLI------RTGFPLDIVANTaLVDLYSKWGRMEDARNVFDRMPR- 388

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  367 nlsPNVATYNALIEGHSNEGNFEEALRLMDMMEKVGLRLNEVSYGALLNGLSKHGKFDLVRRFFERMRTN-GMGFGCIPY 445
Cdd:PLN03081   389 ---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENhRIKPRAMHY 465

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  446 TEMIDGLCKKGLFDEAVQMFHEmfeegvAPDIIT---FSVLINGFYQAGNIKCVKEIICKMYraGFRPNKV-IYSTL--I 519
Cdd:PLN03081   466 ACMIELLGREGLLDEAYAMIRR------APFKPTvnmWAALLTACRIHKNLELGRLAAEKLY--GMGPEKLnNYVVLlnL 537

                          410
                   ....*....|....*
gi 2076540296  520 YNSckMGLVTEALKI 534
Cdd:PLN03081   538 YNS--SGRQAEAAKV 550
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 949-995 1.66e-14

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 68.54  E-value: 1.66e-14
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2076540296  949 DVVAYNVIISGLCANGDIAAAFELYQEMKQNGLWPNATTYTVLVDAL 995
Cdd:pfam13041    2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 651-699 3.99e-13

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 64.69  E-value: 3.99e-13
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 2076540296  651 DNVVYNTILAGTCKSGNMWESVALFEEMVLFGVLPDSYTYTILLNGLCR 699
Cdd:pfam13041    2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 301-349 4.32e-13

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 64.69  E-value: 4.32e-13
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 2076540296  301 DVCTYNMLIDDLCRNDRSAKAYLLLKKMRKRRISPNAITYNTLINGFVK 349
Cdd:pfam13041    2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 135-439 1.66e-12

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 71.83  E-value: 1.66e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  135 RQL--CKL---AVGSRFVFGGLMDTYSLCnsnpsvfdllirvylkdGMTDNALETFNLMRfrgfKPSVYTCNMMLGSMVK 209
Cdd:PLN03081   244 QQLhcCVLktgVVGDTFVSCALIDMYSKC-----------------GDIEDARCVFDGMP----EKTTVAWNSMLAGYAL 302

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  210 DGRVCSVWEFFKELLDLKICPNVATFNILINVLCVEGKLENAVYLLRKMENSGYVPTIVTYNTLLHWFCKKGRYKSAFEL 289
Cdd:PLN03081   303 HGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNV 382

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  290 IDRMGSKgieaDVCTYNMLIDDLCRNDRSAKAYLLLKKMRKRRISPNAITYNTLIN-----GFVKvesigVATRIFDEMA 364
Cdd:PLN03081   383 FDRMPRK----NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSacrysGLSE-----QGWEIFQSMS 453

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2076540296  365 Y-FNLSPNVATYNALIEGHSNEGNFEEALrlmDMMEKVGLRLNEVSYGALLNGLSKHGKFDLVRRFFERMRtnGMG 439
Cdd:PLN03081   454 EnHRIKPRAMHYACMIELLGREGLLDEAY---AMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLY--GMG 524
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 445-487 1.78e-12

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 62.77  E-value: 1.78e-12
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 2076540296  445 YTEMIDGLCKKGLFDEAVQMFHEMFEEGVAPDIITFSVLINGF 487
Cdd:pfam13041    6 YNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 580-629 2.50e-12

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 62.38  E-value: 2.50e-12
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 2076540296  580 PNSITFDCVISGYGNLGDGLKAFSLFDEMVKLGNTPSFFTYGSLLKGLCK 629
Cdd:pfam13041    1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 230-279 3.26e-12

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 62.00  E-value: 3.26e-12
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 2076540296  230 PNVATFNILINVLCVEGKLENAVYLLRKMENSGYVPTIVTYNTLLHWFCK 279
Cdd:pfam13041    1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 370-419 4.16e-12

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 61.61  E-value: 4.16e-12
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 2076540296  370 PNVATYNALIEGHSNEGNFEEALRLMDMMEKVGLRLNEVSYGALLNGLSK 419
Cdd:pfam13041    1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 913-961 5.13e-11

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 58.53  E-value: 5.13e-11
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 2076540296  913 PTVATFTTLMHMLCKESNIGEALKLRNKMQLYGLKLDVVAYNVIISGLC 961
Cdd:pfam13041    1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLC 49
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 846-993 7.65e-11

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 66.82  E-value: 7.65e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  846 KQYITLINAMCRARNLQAALELKDEMTSLGITSPD-VAESAIVRGLALSGKVEEAIlvldRMLRKQLVPTVATFTTLMHM 924
Cdd:PLN03218   371 PEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDkIYHAKFFKACKKQRAVKEAF----RFAKLIRNPTLSTFNMLMSV 446

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2076540296  925 LCKESNIGEALKLRNKMQLYGLKLDVVAYNVIISGLCANGDIAAAFELYQEMKQNGLWPNATTYTVLVD 993
Cdd:PLN03218   447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALID 515
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 279-435 2.37e-10

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 61.64  E-value: 2.37e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  279 KKGRYKSAFELIDRMGSKGIEADVCTYNMLI---------DDLCRNDRSAKAYLLLKKMRKRRISPNAITYNTLINGFVK 349
Cdd:pfam17177   23 KHADATGALALYDAAKAEGVRLAQYHYNVLLylcskaadaTDLKPQLAADRGFEVFEAMKAQGVSPNEATYTAVARLAAA 102

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  350 VESIGVATRIFDEMAYFNLSPNVATYNALIEGHSNEGNFEEALRLMDMMEKVGLRLNEVSYGALLNGLSKHGKFDLVRRF 429
Cdd:pfam17177  103 KGDGDLAFDLVKEMEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEHMLAHGVELEEPELAALLKVSAKAGRADKVYAY 182


                   ....*.
gi 2076540296  430 FERMRT 435
Cdd:pfam17177  183 LHRLRD 188
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 685-735 8.83e-10

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 55.06  E-value: 8.83e-10
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 2076540296  685 PDSYTYTILLNGLCRKGKVAAALLFLGKLMDKGVfTPNQVTYTCLVDGLFK 735
Cdd:pfam13041    1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGV-KPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 335-384 1.14e-09

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 54.68  E-value: 1.14e-09
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 2076540296  335 PNAITYNTLINGFVKVESIGVATRIFDEMAYFNLSPNVATYNALIEGHSN 384
Cdd:pfam13041    1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 383-538 1.19e-09

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 59.33  E-value: 1.19e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  383 SNEGNFEEALRLMDMMEKVGLRLNEVSYGALLNGLSKHG---------KFDLVRRFFERMRTNGMGFGCIPYTEMIDGLC 453
Cdd:pfam17177   22 SKHADATGALALYDAAKAEGVRLAQYHYNVLLYLCSKAAdatdlkpqlAADRGFEVFEAMKAQGVSPNEATYTAVARLAA 101

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  454 KKGLFDEAVQMFHEMFEEGVAPDIITFSVLINGFYQAGNIKCVKEIICKMYRAGFRPNKVIYSTLIYNSCKMGLvteALK 533
Cdd:pfam17177  102 AKGDGDLAFDLVKEMEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEHMLAHGVELEEPELAALLKVSAKAGR---ADK 178


                   ....*
gi 2076540296  534 IYRIM 538
Cdd:pfam17177  179 VYAYL 183
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 254-309 2.27e-09

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 54.67  E-value: 2.27e-09
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 2076540296  254 LLRKMENSGYVPTIVTYNTLLHWFCKKGRYKSAFELIDRMGSKGIEADVCTYNMLI 309
Cdd:pfam13812    2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAIL 57
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 195-243 6.70e-09

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 52.75  E-value: 6.70e-09
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 2076540296  195 PSVYTCNMMLGSMVKDGRVCSVWEFFKELLDLKICPNVATFNILINVLC 243
Cdd:pfam13041    1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLC 49
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 760-921 1.79e-08

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 55.87  E-value: 1.79e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  760 IKILKKMVSEGVEVDRFTFNMLISKCCERGDT---------RKTFDLVNAMNFLGIFPDAETLNALViglnrNLAL---- 826
Cdd:pfam17177   31 LALYDAAKAEGVRLAQYHYNVLLYLCSKAADAtdlkpqlaaDRGFEVFEAMKAQGVSPNEATYTAVA-----RLAAakgd 105

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  827 -QESHIVLHEMAHKGYLPKGKQYITLINAMCRARNLQAALELKDEMTSLGItSPDVAE-SAIVRGLALSGKVEEAILVLD 904
Cdd:pfam17177  106 gDLAFDLVKEMEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEHMLAHGV-ELEEPElAALLKVSAKAGRADKVYAYLH 184

                          170
                   ....*....|....*..
gi 2076540296  905 RMLRKQLVPTVATFTTL 921
Cdd:pfam17177  185 RLRDAVRQVSESTAGVL 201
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 262-293 3.40e-08

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 50.42  E-value: 3.40e-08
                           10        20        30
                   ....*....|....*....|....*....|..
gi 2076540296  262 GYVPTIVTYNTLLHWFCKKGRYKSAFELIDRM 293
Cdd:pfam12854    2 GLKPDVVTYNTLINGLCRAGRVDEAFELLDEM 33
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 358-415 4.76e-08

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 50.82  E-value: 4.76e-08
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 2076540296  358 RIFDEMAYFNLSPNVATYNALIEGHSNEGNFEEALRLMDMMEKVGLRLNEVSYGALLN 415
Cdd:pfam13812    1 SILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILG 58
PLN03077 PLN03077
Protein ECB2; Provisional
 622-1019 8.68e-08

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 56.78  E-value: 8.68e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  622 SLLKGLCKGGNLVEAKKFLNKLHYIPSAVDNVVYnTILAGTCK------SGNMWESVALfEEMVLFGV-LPDSytytiLL 694
Cdd:PLN03077    56 SQLRALCSHGQLEQALKLLESMQELRVPVDEDAY-VALFRLCEwkraveEGSRVCSRAL-SSHPSLGVrLGNA-----ML 128

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  695 NGLCRKGKVAAALLFLGKLMDKGVFTPNqvtytCLVDGLfkagqskaayffikrwsKKAGMLDVGIKILKKMVSEGVEVD 774
Cdd:PLN03077   129 SMFVRFGELVHAWYVFGKMPERDLFSWN-----VLVGGY-----------------AKAGYFDEALCLYHRMLWAGVRPD 186

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  775 RFTFNMLISKCCERGDTRKTFDL-VNAMNFlGIFPDAETLNALVIGLNRNLALQESHIVLHEMAHK----------GYLP 843
Cdd:PLN03077   187 VYTFPCVLRTCGGIPDLARGREVhAHVVRF-GFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRdciswnamisGYFE 265

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  844 kgkqyitliNAMCrarnlQAALELKDEMTSLGItSPDVAE-SAIVRGLALSGKVEEAILVLDRMLRKQLVPTVATFTTLM 922
Cdd:PLN03077   266 ---------NGEC-----LEGLELFFTMRELSV-DPDLMTiTSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLI 330

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  923 HMLCKESNIGEALKLRNKMQLYglklDVVAYNVIISGLCANGDIAAAFELYQEMKQNGLWPNATTYTVLVDALLIEGSnL 1002
Cdd:PLN03077   331 QMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGD-L 405

                          410
                   ....*....|....*..
gi 2076540296 1003 STGDVLLEDLKGRGIIS 1019
Cdd:PLN03077   406 DVGVKLHELAERKGLIS 422
PLN03077 PLN03077
Protein ECB2; Provisional
 188-438 1.06e-07

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 56.40  E-value: 1.06e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  188 MRFRGFKPsvytcNMMLGSMVKDGRVCSVWEFFKelLDLKicpNVATFNILINVLCVEGKLENAVYLLRKMENSGYVPTI 267
Cdd:PLN03077   520 IGFDGFLP-----NALLDLYVRCGRMNYAWNQFN--SHEK---DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE 589

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  268 VTYNTLLHWFCKKGRYKSAFELIDRMGSK-GIEADVCTYNMLIDDLCRNDRSAKAYLLLKKMrkrRISPNAITYNTLING 346
Cdd:PLN03077   590 VTFISLLCACSRSGMVTQGLEYFHSMEEKySITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNA 666

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  347 ---FVKVEsIG--VATRIFDemayfnLSPNVATYNALI-EGHSNEGNFEEALRLMDMMEKVGLRLN------EVS--YGA 412
Cdd:PLN03077   667 criHRHVE-LGelAAQHIFE------LDPNSVGYYILLcNLYADAGKWDEVARVRKTMRENGLTVDpgcswvEVKgkVHA 739

                          250       260       270
                   ....*....|....*....|....*....|
gi 2076540296  413 LLNGLSKHGKFD----LVRRFFERMRTNGM 438
Cdd:PLN03077   740 FLTDDESHPQIKeintVLEGFYEKMKASGL 769
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 228-259 1.08e-07

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 48.88  E-value: 1.08e-07
                           10        20        30
                   ....*....|....*....|....*....|..
gi 2076540296  228 ICPNVATFNILINVLCVEGKLENAVYLLRKME 259
Cdd:pfam12854    3 LKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 721-786 1.60e-07

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 48.90  E-value: 1.60e-07
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2076540296  721 PNQVTYTCLVDGLFKAGQSKAAyffikrwskkagmldvgIKILKKMVSEGVEVDRFTFNMLISKCC 786
Cdd:pfam13041    1 PDVVTYNTLINGYCKKGKVEEA-----------------FKLFNEMKKRGVKPNVYTYTILINGLC 49
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 216-337 1.97e-07

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 52.78  E-value: 1.97e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  216 VWEFFKELLDLKICPNVATFNILINVLCVEGKLENAVYLLRKMENSGYVPTIVTYNTLLHWFCKKGRYKSAFELIDRMGS 295
Cdd:pfam17177   74 GFEVFEAMKAQGVSPNEATYTAVARLAAAKGDGDLAFDLVKEMEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEHMLA 153

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....
gi 2076540296  296 KGIEADVCTYNMLIDDLCRNDRSAKAYLLLKKMRK--RRISPNA 337
Cdd:pfam17177  154 HGVELEEPELAALLKVSAKAGRADKVYAYLHRLRDavRQVSEST 197
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 945-977 2.48e-07

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 47.73  E-value: 2.48e-07
                           10        20        30
                   ....*....|....*....|....*....|...
gi 2076540296  945 GLKLDVVAYNVIISGLCANGDIAAAFELYQEMK 977
Cdd:pfam12854    2 GLKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 323-379 5.00e-07

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 47.74  E-value: 5.00e-07
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 2076540296  323 LLLKKMRKRRISPNAITYNTLINGFVKVESIGVATRIFDEMAYFNLSPNVATYNALI 379
Cdd:pfam13812    1 SILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAIL 57
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 445-477 7.02e-07

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 46.68  E-value: 7.02e-07
                           10        20        30
                   ....*....|....*....|....*....|...
gi 2076540296  445 YTEMIDGLCKKGLFDEAVQMFHEMFEEGVAPDI 477
Cdd:TIGR00756    3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 296-329 1.42e-06

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 45.80  E-value: 1.42e-06
                           10        20        30
                   ....*....|....*....|....*....|....
gi 2076540296  296 KGIEADVCTYNMLIDDLCRNDRSAKAYLLLKKMR 329
Cdd:pfam12854    1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 268-302 1.43e-06

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 45.52  E-value: 1.43e-06
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 2076540296  268 VTYNTLLHWFCKKGRYKSAFELIDRMGSKGIEADV 302
Cdd:TIGR00756    1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 936-994 1.95e-06

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 46.20  E-value: 1.95e-06
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 2076540296  936 KLRNKMQLYGLKLDVVAYNVIISGLCANGDIAAAFELYQEMKQNGLWPNATTYTVLVDA 994
Cdd:pfam13812    1 SILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGV 59
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 951-985 2.66e-06

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 44.75  E-value: 2.66e-06
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 2076540296  951 VAYNVIISGLCANGDIAAAFELYQEMKQNGLWPNA 985
Cdd:TIGR00756    1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 440-468 2.96e-06

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 44.64  E-value: 2.96e-06
                           10        20        30
                   ....*....|....*....|....*....|...
gi 2076540296  440 FGCIP----YTEMIDGLCKKGLFDEAVQMFHEM 468
Cdd:pfam12854    1 KGLKPdvvtYNTLINGLCRAGRVDEAFELLDEM 33
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 681-712 3.39e-06

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 44.64  E-value: 3.39e-06
                           10        20        30
                   ....*....|....*....|....*....|..
gi 2076540296  681 FGVLPDSYTYTILLNGLCRKGKVAAALLFLGK 712
Cdd:pfam12854    1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDE 32
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 366-399 4.21e-06

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 44.26  E-value: 4.21e-06
                           10        20        30
                   ....*....|....*....|....*....|....
gi 2076540296  366 FNLSPNVATYNALIEGHSNEGNFEEALRLMDMME 399
Cdd:pfam12854    1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 289-349 5.64e-06

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 45.04  E-value: 5.64e-06
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2076540296  289 LIDRMGSKGIEADVCTYNMLIDDLCRNDRSAKAYLLLKKMRKRRISPNAITYNTLINGFVK 349
Cdd:pfam13812    2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGG 62
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 501-637 8.45e-06

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 48.16  E-value: 8.45e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  501 CKMYRAGFRPNKVIYSTLiyNSC-KMGLVTEALKIYRIMNCSG--HAADHFTC-------NTLVASLCRDGKVREAEEFM 570
Cdd:pfam17177    1 QRKKKGKQTPESELRFQL--DKCsKHADATGALALYDAAKAEGvrLAQYHYNVllylcskAADATDLKPQLAADRGFEVF 78

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2076540296  571 RHMSRIGPNPNSITFDCVISGYGNLGDGLKAFSLFDEMVKLGNTPSFFTYGSLLKGLCKGGNL-----VEAK 637
Cdd:pfam17177   79 EAMKAQGVSPNEATYTAVARLAAAKGDGDLAFDLVKEMEAAGVSPRLRSYSPALHAYCEAGDAdkayeVEEH 150
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 168-209 1.12e-05

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 43.51  E-value: 1.12e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 2076540296  168 LIRVYLKDGMTDNALETFNLMRFRGFKPSVYTCNMMLGSMVK 209
Cdd:pfam13041    9 LINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 331-363 1.41e-05

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 42.72  E-value: 1.41e-05
                           10        20        30
                   ....*....|....*....|....*....|...
gi 2076540296  331 RRISPNAITYNTLINGFVKVESIGVATRIFDEM 363
Cdd:pfam12854    1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEM 33
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 885-927 1.50e-05

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 43.12  E-value: 1.50e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 2076540296  885 AIVRGLALSGKVEEAILVLDRMLRKQLVPTVATFTTLMHMLCK 927
Cdd:pfam13041    8 TLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 268-298 1.55e-05

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 42.84  E-value: 1.55e-05
                           10        20        30
                   ....*....|....*....|....*....|.
gi 2076540296  268 VTYNTLLHWFCKKGRYKSAFELIDRMGSKGI 298
Cdd:pfam01535    1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 542-574 1.81e-05

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 42.72  E-value: 1.81e-05
                           10        20        30
                   ....*....|....*....|....*....|...
gi 2076540296  542 GHAADHFTCNTLVASLCRDGKVREAEEFMRHMS 574
Cdd:pfam12854    2 GLKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 445-473 1.83e-05

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 42.45  E-value: 1.83e-05
                           10        20
                   ....*....|....*....|....*....
gi 2076540296  445 YTEMIDGLCKKGLFDEAVQMFHEMFEEGV 473
Cdd:pfam01535    3 YNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 951-981 3.05e-05

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 41.68  E-value: 3.05e-05
                           10        20        30
                   ....*....|....*....|....*....|.
gi 2076540296  951 VAYNVIISGLCANGDIAAAFELYQEMKQNGL 981
Cdd:pfam01535    1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 374-407 3.25e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 41.67  E-value: 3.25e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 2076540296  374 TYNALIEGHSNEGNFEEALRLMDMMEKVGLRLNE 407
Cdd:TIGR00756    2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 909-941 3.94e-05

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 41.56  E-value: 3.94e-05
                           10        20        30
                   ....*....|....*....|....*....|...
gi 2076540296  909 KQLVPTVATFTTLMHMLCKESNIGEALKLRNKM 941
Cdd:pfam12854    1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEM 33
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 464-519 4.93e-05

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 42.35  E-value: 4.93e-05
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 2076540296  464 MFHEMFEEGVAPDIITFSVLINGFYQAGNIKCVKEIICKMYRAGFRPNKVIYSTLI 519
Cdd:pfam13812    2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAIL 57
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 475-524 6.01e-05

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 41.58  E-value: 6.01e-05
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 2076540296  475 PDIITFSVLINGFYQAGNIKCVKEIICKMYRAGFRPNKVIYSTLIYNSCK 524
Cdd:pfam13041    1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 510-559 8.14e-05

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 41.19  E-value: 8.14e-05
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 2076540296  510 PNKVIYSTLIYNSCKMGLVTEALKIYRIMNCSGHAADHFTCNTLVASLCR 559
Cdd:pfam13041    1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 220-274 1.41e-04

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 40.80  E-value: 1.41e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 2076540296  220 FKELLDLKICPNVATFNILINVLCVEGKLENAVYLLRKMENSGYVPTIVTYNTLL 274
Cdd:pfam13812    3 LREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAIL 57
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 234-267 1.98e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 39.75  E-value: 1.98e-04
                           10        20        30
                   ....*....|....*....|....*....|....
gi 2076540296  234 TFNILINVLCVEGKLENAVYLLRKMENSGYVPTI 267
Cdd:TIGR00756    2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 374-403 2.01e-04

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 39.37  E-value: 2.01e-04
                           10        20        30
                   ....*....|....*....|....*....|
gi 2076540296  374 TYNALIEGHSNEGNFEEALRLMDMMEKVGL 403
Cdd:pfam01535    2 TYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 615-642 3.29e-04

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 38.87  E-value: 3.29e-04
                           10        20
                   ....*....|....*....|....*...
gi 2076540296  615 PSFFTYGSLLKGLCKGGNLVEAKKFLNK 642
Cdd:pfam12854    5 PDVVTYNTLINGLCRAGRVDEAFELLDE 32
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 303-337 5.39e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 38.59  E-value: 5.39e-04
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 2076540296  303 CTYNMLIDDLCRNDRSAKAYLLLKKMRKRRISPNA 337
Cdd:TIGR00756    1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 776-820 5.49e-04

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 38.88  E-value: 5.49e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*
gi 2076540296  776 FTFNMLISKCCERGDTRKTFDLVNAMNFLGIFPDAETLNALVIGL 820
Cdd:pfam13041    4 VTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 651-679 5.76e-04

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 38.48  E-value: 5.76e-04
                           10        20
                   ....*....|....*....|....*....
gi 2076540296  651 DNVVYNTILAGTCKSGNMWESVALFEEMV 679
Cdd:pfam12854    6 DVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 653-687 7.46e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 38.21  E-value: 7.46e-04
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 2076540296  653 VVYNTILAGTCKSGNMWESVALFEEMVLFGVLPDS 687
Cdd:TIGR00756    1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 917-950 9.92e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 37.82  E-value: 9.92e-04
                           10        20        30
                   ....*....|....*....|....*....|....
gi 2076540296  917 TFTTLMHMLCKESNIGEALKLRNKMQLYGLKLDV 950
Cdd:TIGR00756    2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 583-612 1.58e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 37.06  E-value: 1.58e-03
                           10        20        30
                   ....*....|....*....|....*....|
gi 2076540296  583 ITFDCVISGYGNLGDGLKAFSLFDEMVKLG 612
Cdd:pfam01535    1 VTYNSLISGYCKNGKLEEALELFKEMKEKG 30
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 408-438 1.87e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 36.67  E-value: 1.87e-03
                           10        20        30
                   ....*....|....*....|....*....|.
gi 2076540296  408 VSYGALLNGLSKHGKFDLVRRFFERMRTNGM 438
Cdd:pfam01535    1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 234-262 1.94e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 36.67  E-value: 1.94e-03
                           10        20
                   ....*....|....*....|....*....
gi 2076540296  234 TFNILINVLCVEGKLENAVYLLRKMENSG 262
Cdd:pfam01535    2 TYNSLISGYCKNGKLEEALELFKEMKEKG 30
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 120-332 2.09e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 41.25  E-value: 2.09e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  120 ILVRARMYDSAKSLLRQLCKLAvgsrfvfgglmdtyslcNSNPSVFDLLIRVYLKDGMTDNALETFNLMRFRGFKPSVYT 199
Cdd:COG2956     85 DYLKAGLLDRAEELLEKLLELD-----------------PDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAY 147

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2076540296  200 CNMMLGSMvKDGRVCSVWEFFKELldLKICPN-VATFNILINVLCVEGKLENAVYLLRKME--NSGYVPtivTYNTLLHW 276
Cdd:COG2956    148 CELAELYL-EQGDYDEAIEALEKA--LKLDPDcARALLLLAELYLEQGDYEEAIAALERALeqDPDYLP---ALPRLAEL 221

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 2076540296  277 FCKKGRYKSAFELIDRMGSKGIEADVctYNMLIDDLCRNDRSAKAYLLLKKMRKRR 332
Cdd:COG2956    222 YEKLGDPEEALELLRKALELDPSDDL--LLALADLLERKEGLEAALALLERQLRRH 275
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 924-992 2.38e-03

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 40.84  E-value: 2.38e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2076540296  924 MLCKESNIGEALKLRNKMQLYGLKLDVVAYNVIISgLCANGDIAAA----------FELYQEMKQNGLWPNATTYTVLV 992
Cdd:pfam17177   20 KCSKHADATGALALYDAAKAEGVRLAQYHYNVLLY-LCSKAADATDlkpqlaadrgFEVFEAMKAQGVSPNEATYTAVA 97
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 653-683 2.41e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 36.67  E-value: 2.41e-03
                           10        20        30
                   ....*....|....*....|....*....|.
gi 2076540296  653 VVYNTILAGTCKSGNMWESVALFEEMVLFGV 683
Cdd:pfam01535    1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 507-538 2.44e-03

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 36.55  E-value: 2.44e-03
                           10        20        30
                   ....*....|....*....|....*....|..
gi 2076540296  507 GFRPNKVIYSTLIYNSCKMGLVTEALKIYRIM 538
Cdd:pfam12854    2 GLKPDVVTYNTLINGLCRAGRVDEAFELLDEM 33
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 583-616 2.99e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 36.28  E-value: 2.99e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 2076540296  583 ITFDCVISGYGNLGDGLKAFSLFDEMVKLGNTPS 616
Cdd:TIGR00756    1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 408-438 3.39e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 36.28  E-value: 3.39e-03
                           10        20        30
                   ....*....|....*....|....*....|.
gi 2076540296  408 VSYGALLNGLSKHGKFDLVRRFFERMRTNGM 438
Cdd:TIGR00756    1 VTYNTLIDGLCKAGRVEEALELFKEMKERGI 31
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 848-881 5.61e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 35.51  E-value: 5.61e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 2076540296  848 YITLINAMCRARNLQAALELKDEMTSLGItSPDV 881
Cdd:TIGR00756    3 YNTLIDGLCKAGRVEEALELFKEMKERGI-EPDV 35
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 164-197 5.66e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 35.51  E-value: 5.66e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 2076540296  164 VFDLLIRVYLKDGMTDNALETFNLMRFRGFKPSV 197
Cdd:TIGR00756    2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 577-609 5.93e-03

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 35.40  E-value: 5.93e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 2076540296  577 GPNPNSITFDCVISGYGNLGDGLKAFSLFDEMV 609
Cdd:pfam12854    2 GLKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 471-503 6.41e-03

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 35.40  E-value: 6.41e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 2076540296  471 EGVAPDIITFSVLINGFYQAGNIKCVKEIICKM 503
Cdd:pfam12854    1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEM 33
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 688-718 6.90e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 35.12  E-value: 6.90e-03
                           10        20        30
                   ....*....|....*....|....*....|.
gi 2076540296  688 YTYTILLNGLCRKGKVAAALLFLGKLMDKGV 718
Cdd:TIGR00756    1 VTYNTLIDGLCKAGRVEEALELFKEMKERGI 31
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 548-579 7.32e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 35.12  E-value: 7.32e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 2076540296  548 FTCNTLVASLCRDGKVREAEEFMRHM--SRIGPN 579
Cdd:TIGR00756    1 VTYNTLIDGLCKAGRVEEALELFKEMkeRGIEPD 34
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 674-730 8.13e-03

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 35.80  E-value: 8.13e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 2076540296  674 LFEEMVLFGVLPDSYTYTILLNGLCRKGKVAAALLFLGKLMDKGVfTPNQVTYTCLV 730
Cdd:pfam13812    2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGI-KPTLDTYNAIL 57
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 548-577 8.59e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 34.75  E-value: 8.59e-03
                           10        20        30
                   ....*....|....*....|....*....|
gi 2076540296  548 FTCNTLVASLCRDGKVREAEEFMRHMSRIG 577
Cdd:pfam01535    1 VTYNSLISGYCKNGKLEEALELFKEMKEKG 30
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 769-801 9.32e-03

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 35.01  E-value: 9.32e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 2076540296  769 EGVEVDRFTFNMLISKCCERGDTRKTFDLVNAM 801
Cdd:pfam12854    1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEM 33
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 571-625 9.81e-03

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 35.80  E-value: 9.81e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 2076540296  571 RHMSRIGPNPNSITFDCVISGYGNLGDGLKAFSLFDEMVKLGNTPSFFTYGSLLK 625
Cdd:pfam13812    4 REMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILG 58
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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