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Conserved domains on  [gi|2280959766|gb|KAI5765154|]
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ST13 [Gulo gulo luscus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Hip_N cd14438
N-terminal dimerization domain of the Hsp70-interacting protein (Hip) and similar proteins; ...
 3-43 1.31e-19

N-terminal dimerization domain of the Hsp70-interacting protein (Hip) and similar proteins; The Hsc70/Hsp70-interacting protein (Hip, also p48 or suppressor of tumorigenicity ST13) functions as a regulator of the cyclic action of Hsp70. Hip forms homodimers, and this model characterizes the N-terminal dimerization domain, which may not be directly involved in its regulatory function. A central domain of Hip that contains TPR repeats binds the ATPase domain of Hsp70 and slows the release of ADP.


:

Pssm-ID: 271228  Cd Length: 41  Bit Score: 81.06  E-value: 1.31e-19
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 2280959766   3 PRKVSELRAFVKMCKQDPSVLHTEEMRFLREWVESMGGKIP 43
Cdd:cd14438     1 PEKLKELKAFVELCKQNPSILHTPELSFFKEYLESLGAKIP 41
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
128-221 1.06e-16

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 78.03  E-value: 1.06e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2280959766 128 GELQKAIDLFTDAIKLNPRLAILYAKRASVFIKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAAHDLAL 207
Cdd:COG4785    87 GDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEK 166

                          90
                  ....*....|....
gi 2280959766 208 ACKLDyDEDASAML 221
Cdd:COG4785   167 ALELD-PNDPERAL 179
STI1 smart00727
Heat shock chaperonin-binding motif;
319-358 3.69e-09

Heat shock chaperonin-binding motif;


:

Pssm-ID: 128966  Cd Length: 41  Bit Score: 51.88  E-value: 3.69e-09
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 2280959766  319 DPEVLAAMQDPEVMVAFQDVAQNPANMSKY-QSNPKVMNLI 358
Cdd:smart00727   1 DPEMALRLQNPQVQSLLQDMQQNPDMLAQMlQENPQLLQLI 41
 
Name Accession Description Interval E-value
Hip_N cd14438
N-terminal dimerization domain of the Hsp70-interacting protein (Hip) and similar proteins; ...
 3-43 1.31e-19

N-terminal dimerization domain of the Hsp70-interacting protein (Hip) and similar proteins; The Hsc70/Hsp70-interacting protein (Hip, also p48 or suppressor of tumorigenicity ST13) functions as a regulator of the cyclic action of Hsp70. Hip forms homodimers, and this model characterizes the N-terminal dimerization domain, which may not be directly involved in its regulatory function. A central domain of Hip that contains TPR repeats binds the ATPase domain of Hsp70 and slows the release of ADP.


Pssm-ID: 271228  Cd Length: 41  Bit Score: 81.06  E-value: 1.31e-19
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 2280959766   3 PRKVSELRAFVKMCKQDPSVLHTEEMRFLREWVESMGGKIP 43
Cdd:cd14438     1 PEKLKELKAFVELCKQNPSILHTPELSFFKEYLESLGAKIP 41
HipN pfam18253
Hsp70-interacting protein N N-terminal domain; This is the N-terminal domain, known as HipN, ...
 2-43 5.07e-17

Hsp70-interacting protein N N-terminal domain; This is the N-terminal domain, known as HipN, found in Hsp70-interacting protein (Hip) present in Rattus norvegicus. Hip cooperates with the chaperone Hsp70 in protein folding and prevention of aggregation and may delay substrate release by slowing ADP dissociation from Hsp70. HipN is responsible for N-terminal homo-dimerization which is necessary so that the Hip dimer can interact with Hsp70 molecules.


Pssm-ID: 408069  Cd Length: 42  Bit Score: 73.85  E-value: 5.07e-17
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 2280959766   2 DPRKVSELRAFVKMCKQDPSVLHTEEMRFLREWVESMGGKIP 43
Cdd:pfam18253   1 DPAHLSLLKQFVDLCKANPSILHLPELAFFKEFLESLGATVP 42
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
128-221 1.06e-16

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 78.03  E-value: 1.06e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2280959766 128 GELQKAIDLFTDAIKLNPRLAILYAKRASVFIKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAAHDLAL 207
Cdd:COG4785    87 GDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEK 166

                          90
                  ....*....|....
gi 2280959766 208 ACKLDyDEDASAML 221
Cdd:COG4785   167 ALELD-PNDPERAL 179
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 114-233 1.31e-09

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 59.03  E-value: 1.31e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2280959766 114 ANDKKVAAIDALNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFIKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHR 193
Cdd:PLN03088    2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACM 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 2280959766 194 LLGHWEEAAHDLALACKLDYDEDASA-MLKEVQpraQKIAE 233
Cdd:PLN03088   82 KLEEYQTAKAALEKGASLAPGDSRFTkLIKECD---EKIAE 119
STI1 smart00727
Heat shock chaperonin-binding motif;
319-358 3.69e-09

Heat shock chaperonin-binding motif;


Pssm-ID: 128966  Cd Length: 41  Bit Score: 51.88  E-value: 3.69e-09
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 2280959766  319 DPEVLAAMQDPEVMVAFQDVAQNPANMSKY-QSNPKVMNLI 358
Cdd:smart00727   1 DPEMALRLQNPQVQSLLQDMQQNPDMLAQMlQENPQLLQLI 41
STI1 pfam17830
STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 ...
 316-361 1.42e-08

STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 protein.


Pssm-ID: 436075  Cd Length: 55  Bit Score: 50.64  E-value: 1.42e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 2280959766 316 ILSDPEVLAAMQDPEVMVAFQDVAQNPANMSKYQSNPKVMNLISKL 361
Cdd:pfam17830   8 LAANPETRALLSDPEFVAKLQQIQKNPSSLQQYMQDPRVMTKLGVL 53
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 23-214 3.05e-08

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 55.38  E-value: 3.05e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2280959766  23 LHTEEMRFLREWVESMGGKIPPATHKTKSEDSIKeekpdSKKAEENIKTDEPSSEESDLEIDNEGVIEPDTDApQEMGDE 102
Cdd:TIGR00990 239 LKKFAESKAKEILETKPENLPSVTFVGNYLQSFR-----PKPRPAGLEDSNELDEETGNGQLQLGLKSPESKA-DESYEE 312

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2280959766 103 NVEITEEMMDQANDKKVAAIdALN--------DGELQKAIDLFTDAIKLNPRLAILYAKRASVFIKLQKPNAAIRDCDRA 174
Cdd:TIGR00990 313 AARAFEKALDLGKLGEKEAI-ALNlrgtfkclKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKA 391

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 2280959766 175 IEINPDSAQPYKWRGKAHRLLGHWEEAAHDLALACKLDYD 214
Cdd:TIGR00990 392 LKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD 431
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 56-218 6.92e-07

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 51.14  E-value: 6.92e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2280959766  56 KEEKPDSKKAEeniKTDEPSSEESDLEIDNEGVIEPDTDAPQEMGDENVEITEEMMDQ-ANDKKVAAIDALNDGELQKAI 134
Cdd:TIGR00990  71 KKERRKRKQAE---KETEGKTEEKKSTAPKNAPVEPADELPEIDESSVANLSEEERKKyAAKLKEKGNKAYRNKDFNKAI 147

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2280959766 135 DLFTDAIKLNPRlAILYAKRASVFIKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAAHDLALACKLDYD 214
Cdd:TIGR00990 148 KLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGF 226


                  ....
gi 2280959766 215 EDAS 218
Cdd:TIGR00990 227 RNEQ 230
TPR_9 pfam13371
Tetratricopeptide repeat;
159-223 2.90e-04

Tetratricopeptide repeat;


Pssm-ID: 463860 [Multi-domain]  Cd Length: 73  Bit Score: 38.74  E-value: 2.90e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2280959766 159 IKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAAHDLALACKLDYDEDASAMLKE 223
Cdd:pfam13371   6 LREEDWERALAVVERLLLLAPDDPEERRDRGLLYAQLGCFQAALEDLEAYLELAPDAPDAEAIRE 70
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 148-180 9.56e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 33.57  E-value: 9.56e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 2280959766  148 AILYAKRASVFIKLQKPNAAIRDCDRAIEINPD 180
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
 
Name Accession Description Interval E-value
Hip_N cd14438
N-terminal dimerization domain of the Hsp70-interacting protein (Hip) and similar proteins; ...
 3-43 1.31e-19

N-terminal dimerization domain of the Hsp70-interacting protein (Hip) and similar proteins; The Hsc70/Hsp70-interacting protein (Hip, also p48 or suppressor of tumorigenicity ST13) functions as a regulator of the cyclic action of Hsp70. Hip forms homodimers, and this model characterizes the N-terminal dimerization domain, which may not be directly involved in its regulatory function. A central domain of Hip that contains TPR repeats binds the ATPase domain of Hsp70 and slows the release of ADP.


Pssm-ID: 271228  Cd Length: 41  Bit Score: 81.06  E-value: 1.31e-19
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 2280959766   3 PRKVSELRAFVKMCKQDPSVLHTEEMRFLREWVESMGGKIP 43
Cdd:cd14438     1 PEKLKELKAFVELCKQNPSILHTPELSFFKEYLESLGAKIP 41
HipN pfam18253
Hsp70-interacting protein N N-terminal domain; This is the N-terminal domain, known as HipN, ...
 2-43 5.07e-17

Hsp70-interacting protein N N-terminal domain; This is the N-terminal domain, known as HipN, found in Hsp70-interacting protein (Hip) present in Rattus norvegicus. Hip cooperates with the chaperone Hsp70 in protein folding and prevention of aggregation and may delay substrate release by slowing ADP dissociation from Hsp70. HipN is responsible for N-terminal homo-dimerization which is necessary so that the Hip dimer can interact with Hsp70 molecules.


Pssm-ID: 408069  Cd Length: 42  Bit Score: 73.85  E-value: 5.07e-17
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 2280959766   2 DPRKVSELRAFVKMCKQDPSVLHTEEMRFLREWVESMGGKIP 43
Cdd:pfam18253   1 DPAHLSLLKQFVDLCKANPSILHLPELAFFKEFLESLGATVP 42
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
128-221 1.06e-16

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 78.03  E-value: 1.06e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2280959766 128 GELQKAIDLFTDAIKLNPRLAILYAKRASVFIKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAAHDLAL 207
Cdd:COG4785    87 GDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEK 166

                          90
                  ....*....|....
gi 2280959766 208 ACKLDyDEDASAML 221
Cdd:COG4785   167 ALELD-PNDPERAL 179
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
128-214 2.80e-14

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 71.58  E-value: 2.80e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2280959766 128 GELQKAIDLFTDAIKLNPRLAILYAKRASVFIKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAAHDLAL 207
Cdd:COG0457    56 GRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYER 135


                  ....*..
gi 2280959766 208 ACKLDYD 214
Cdd:COG0457   136 ALELDPD 142
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
128-214 1.19e-13

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 70.04  E-value: 1.19e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2280959766 128 GELQKAIDLFTDAIKLNPRLAILYAKRASVFIKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAAHDLAL 207
Cdd:COG0457    22 GRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDK 101


                  ....*..
gi 2280959766 208 ACKLDYD 214
Cdd:COG0457   102 ALELDPD 108
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 128-212 5.39e-13

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 70.02  E-value: 5.39e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2280959766 128 GELQKAIDLFTDAIKLNPRLAILYAKRASVFIKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAAHDLAL 207
Cdd:COG3914   126 GRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRR 205


                  ....*
gi 2280959766 208 ACKLD 212
Cdd:COG3914   206 ALELD 210
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
128-278 1.34e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 66.95  E-value: 1.34e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2280959766 128 GELQKAIDLFTDAIKLNPRLAILYAKRASVFIKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAAHDLAL 207
Cdd:COG0457    90 GRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEK 169

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2280959766 208 ACKLDYDEDASAMLKEVQPRAQKIAEHRRKYERKREEREIKERIERVKKAREEHERAQREEEARRQSGAQY 278
Cdd:COG0457   170 LEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALAL 240
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 111-212 7.54e-12

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 66.56  E-value: 7.54e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2280959766 111 MDQANDKKVAAIDALNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFIKLQKPNAAIRDCDRAIEINPDSAQPYKWRGK 190
Cdd:COG3914    75 LLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGE 154

                          90       100
                  ....*....|....*....|..
gi 2280959766 191 AHRLLGHWEEAAHDLALACKLD 212
Cdd:COG3914   155 ALRRLGRLEEAIAALRRALELD 176
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
143-221 7.11e-10

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 58.39  E-value: 7.11e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2280959766 143 LNPRLAILYAKRASVFIKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAAHDLALACKLDyDEDASAML 221
Cdd:COG4785    68 ALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELD-PDYAYAYL 145
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
141-214 8.93e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 58.48  E-value: 8.93e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2280959766 141 IKLNPRLAILYAKRASVFIKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAAHDLALACKLDYD 214
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPD 74
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 121-212 9.62e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 56.35  E-value: 9.62e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2280959766 121 AIDALNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFIKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHRLLGHWEE 200
Cdd:COG4783    11 AQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDE 90

                          90
                  ....*....|..
gi 2280959766 201 AAHDLALACKLD 212
Cdd:COG4783    91 ALALLEKALKLD 102
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 114-233 1.31e-09

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 59.03  E-value: 1.31e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2280959766 114 ANDKKVAAIDALNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFIKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHR 193
Cdd:PLN03088    2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACM 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 2280959766 194 LLGHWEEAAHDLALACKLDYDEDASA-MLKEVQpraQKIAE 233
Cdd:PLN03088   82 KLEEYQTAKAALEKGASLAPGDSRFTkLIKECD---EKIAE 119
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
124-214 1.43e-09

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 54.41  E-value: 1.43e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2280959766 124 ALNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFIKLQKPNAAIRdCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAAH 203
Cdd:COG3063     2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80

                          90
                  ....*....|.
gi 2280959766 204 DLALACKLDYD 214
Cdd:COG3063    81 YLERALELDPS 91
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 124-215 1.62e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 55.58  E-value: 1.62e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2280959766 124 ALNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFIKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAAH 203
Cdd:COG4783    48 LLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIA 127

                          90
                  ....*....|..
gi 2280959766 204 DLALACKLDYDE 215
Cdd:COG4783   128 ALEKALELDPDD 139
STI1 smart00727
Heat shock chaperonin-binding motif;
319-358 3.69e-09

Heat shock chaperonin-binding motif;


Pssm-ID: 128966  Cd Length: 41  Bit Score: 51.88  E-value: 3.69e-09
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 2280959766  319 DPEVLAAMQDPEVMVAFQDVAQNPANMSKY-QSNPKVMNLI 358
Cdd:smart00727   1 DPEMALRLQNPQVQSLLQDMQQNPDMLAQMlQENPQLLQLI 41
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 125-223 9.92e-09

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 53.09  E-value: 9.92e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2280959766 125 LNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFIKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAAHD 204
Cdd:COG4235    28 LRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAA 107

                          90
                  ....*....|....*....
gi 2280959766 205 LALACKLDYDEDASAMLKE 223
Cdd:COG4235   108 WQKLLALLPADAPARLLEA 126
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 111-212 1.14e-08

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 53.81  E-value: 1.14e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2280959766 111 MDQANDKKVAAIDALNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFIKLQKPNAAIRDCDRAIEINPDSAQPYKWRGK 190
Cdd:COG5010    51 AKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAA 130

                          90       100
                  ....*....|....*....|..
gi 2280959766 191 AHRLLGHWEEAAHDLALACKLD 212
Cdd:COG5010   131 LLLSLGQDDEAKAALQRALGTS 152
STI1 pfam17830
STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 ...
 316-361 1.42e-08

STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 protein.


Pssm-ID: 436075  Cd Length: 55  Bit Score: 50.64  E-value: 1.42e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 2280959766 316 ILSDPEVLAAMQDPEVMVAFQDVAQNPANMSKYQSNPKVMNLISKL 361
Cdd:pfam17830   8 LAANPETRALLSDPEFVAKLQQIQKNPSSLQQYMQDPRVMTKLGVL 53
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 124-233 1.91e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 54.74  E-value: 1.91e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2280959766 124 ALNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFIKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAAH 203
Cdd:COG2956   154 YLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALE 233

                          90       100       110
                  ....*....|....*....|....*....|
gi 2280959766 204 DLALACKLDYDEDASAMLKEVQPRAQKIAE 233
Cdd:COG2956   234 LLRKALELDPSDDLLLALADLLERKEGLEA 263
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 23-214 3.05e-08

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 55.38  E-value: 3.05e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2280959766  23 LHTEEMRFLREWVESMGGKIPPATHKTKSEDSIKeekpdSKKAEENIKTDEPSSEESDLEIDNEGVIEPDTDApQEMGDE 102
Cdd:TIGR00990 239 LKKFAESKAKEILETKPENLPSVTFVGNYLQSFR-----PKPRPAGLEDSNELDEETGNGQLQLGLKSPESKA-DESYEE 312

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2280959766 103 NVEITEEMMDQANDKKVAAIdALN--------DGELQKAIDLFTDAIKLNPRLAILYAKRASVFIKLQKPNAAIRDCDRA 174
Cdd:TIGR00990 313 AARAFEKALDLGKLGEKEAI-ALNlrgtfkclKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKA 391

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 2280959766 175 IEINPDSAQPYKWRGKAHRLLGHWEEAAHDLALACKLDYD 214
Cdd:TIGR00990 392 LKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD 431
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 119-221 2.52e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 51.65  E-value: 2.52e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2280959766 119 VAAIDALNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFIKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHRLLGHW 198
Cdd:COG2956    13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLL 92

                          90       100
                  ....*....|....*....|....
gi 2280959766 199 EEAAHDLALACKLD-YDEDASAML 221
Cdd:COG2956    93 DRAEELLEKLLELDpDDAEALRLL 116
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 101-233 2.57e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 51.27  E-value: 2.57e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2280959766 101 DENVEITEEMMDQANDKKVA----AIDALNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFIKLQKPNAAIRDCDRAIE 176
Cdd:COG2956    59 DRAIRIHQKLLERDPDRAEAllelAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLK 138

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2280959766 177 INPDSAQPYKWRGKAHRLLGHWEEAAHDLALACKLD-YDEDASAMLKEVQPRAQKIAE 233
Cdd:COG2956   139 LGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDpDCARALLLLAELYLEQGDYEE 196
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
125-196 3.54e-07

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 50.68  E-value: 3.54e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2280959766 125 LNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFIKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHRLLG 196
Cdd:COG4785   118 LLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLD 189
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 56-218 6.92e-07

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 51.14  E-value: 6.92e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2280959766  56 KEEKPDSKKAEeniKTDEPSSEESDLEIDNEGVIEPDTDAPQEMGDENVEITEEMMDQ-ANDKKVAAIDALNDGELQKAI 134
Cdd:TIGR00990  71 KKERRKRKQAE---KETEGKTEEKKSTAPKNAPVEPADELPEIDESSVANLSEEERKKyAAKLKEKGNKAYRNKDFNKAI 147

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2280959766 135 DLFTDAIKLNPRlAILYAKRASVFIKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAAHDLALACKLDYD 214
Cdd:TIGR00990 148 KLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGF 226


                  ....
gi 2280959766 215 EDAS 218
Cdd:TIGR00990 227 RNEQ 230
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 108-221 6.19e-06

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 48.07  E-value: 6.19e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2280959766 108 EEMMDQANDKKVAAIDALNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFIKLQKPNAAIRDCDRAIEINPDSAQPYKW 187
Cdd:COG3914    38 AAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFN 117

                          90       100       110
                  ....*....|....*....|....*....|....
gi 2280959766 188 RGKAHRLLGHWEEAAHDLALACKLDYDeDASAML 221
Cdd:COG3914   118 LGNLLLALGRLEEALAALRRALALNPD-FAEAYL 150
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 112-233 2.08e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 44.18  E-value: 2.08e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2280959766 112 DQANDKKVAAIDALNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFIKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKA 191
Cdd:COG5010    18 TKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALL 97

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 2280959766 192 HRLLGHWEEAAHDLALACKLD-YDEDASAMLKEVQPRAQKIAE 233
Cdd:COG5010    98 YSRSGDKDEAKEYYEKALALSpDNPNAYSNLAALLLSLGQDDE 140
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 128-219 2.84e-05

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 46.14  E-value: 2.84e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2280959766 128 GELQKAIDLFTDAIKLNPRLAILYAKRASVFIKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAAHDLAL 207
Cdd:COG3914   160 GRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEEL 239

                          90
                  ....*....|..
gi 2280959766 208 ACKLDYDEDASA 219
Cdd:COG3914   240 LAALARGPSELS 251
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 132-221 7.85e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 41.92  E-value: 7.85e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2280959766 132 KAIDLFTDAIKLNPRLAILYAKRASVFIKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAAHDLALACKL 211
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                          90
                  ....*....|
gi 2280959766 212 DYDEDASAML 221
Cdd:COG4235    81 DPDNPEALYL 90
TPR_9 pfam13371
Tetratricopeptide repeat;
159-223 2.90e-04

Tetratricopeptide repeat;


Pssm-ID: 463860 [Multi-domain]  Cd Length: 73  Bit Score: 38.74  E-value: 2.90e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2280959766 159 IKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAAHDLALACKLDYDEDASAMLKE 223
Cdd:pfam13371   6 LREEDWERALAVVERLLLLAPDDPEERRDRGLLYAQLGCFQAALEDLEAYLELAPDAPDAEAIRE 70
TPR_1 pfam00515
Tetratricopeptide repeat;
148-180 1.03e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 36.24  E-value: 1.03e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 2280959766 148 AILYAKRASVFIKLQKPNAAIRDCDRAIEINPD 180
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 146-215 2.25e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 37.86  E-value: 2.25e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2280959766 146 RLAILYAKRASVFIKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAAHDLALACKLDYDE 215
Cdd:COG4783     2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDE 71
SirB1 COG2912
Regulator of sirC expression, contains transglutaminase-like and TPR domains [Signal ...
 156-223 3.46e-03

Regulator of sirC expression, contains transglutaminase-like and TPR domains [Signal transduction mechanisms];


Pssm-ID: 442156 [Multi-domain]  Cd Length: 264  Bit Score: 38.65  E-value: 3.46e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2280959766 156 SVFIKLQKPNAAIRDCDRAIEINPDSaqPYKWR--GKAHRLLGHWEEAAHDLALACKLDYDEDASAMLKE 223
Cdd:COG2912   187 AAYLREKDWERALRVVERLLLLDPDD--PYEIRdrGLLYAQLGCYQAALEDLEYFLEQCPEDPDAELIKE 254
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
157-201 4.99e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 35.92  E-value: 4.99e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2280959766 157 VFIKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHRLLGHWEEA 201
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA 45
TPR_11 pfam13414
TPR repeat;
157-196 6.33e-03

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 34.37  E-value: 6.33e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 2280959766 157 VFIKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHRLLG 196
Cdd:pfam13414   3 AYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
125-183 8.37e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 35.53  E-value: 8.37e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2280959766 125 LNDGELQKAIDlFTDAIKLNPRLAILYAKRASVFIKLQKPNAAIRDCDRAIEINPDSAQ 183
Cdd:COG3063    37 LEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPSALR 94
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 148-180 9.56e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 33.57  E-value: 9.56e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 2280959766  148 AILYAKRASVFIKLQKPNAAIRDCDRAIEINPD 180
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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