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Conserved domains on  [gi|2420985043|gb|KAJ2417643|]
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hypothetical protein GGI10_000048 [Coemansia sp. RSA 2530]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
zf-CHY pfam05495
CHY zinc finger; This family of domains are likely to bind to zinc ions. They contain many ...
 772-835 1.72e-12

CHY zinc finger; This family of domains are likely to bind to zinc ions. They contain many conserved cysteine and histidine residues. We have named this domain after the N-terminal motif CXHY. This domain can be found in isolation in some proteins, but is also often associated with pfam00097. One of the proteins in this family is a mitochondrial intermembrane space protein called Hot13. This protein is involved in the assembly of small TIM complexes.


:

Pssm-ID: 461665  Cd Length: 75  Bit Score: 63.53  E-value: 1.72e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2420985043 772 CKHFRkSTRWLRFPCCGKTFPCVTCHDEKEDhEHE----YAQIMLCGHCSKEQRISKAeqsgpCVGCG 835
Cdd:pfam05495   1 CKHYH-RNCKLRCPCCGKWYPCRLCHDEVED-EHPldryAVTEMLCMLCDTEQPVAVL-----CGNCG 61
zf_CCCH_4 pfam18345
Zinc finger domain; This is a zinc finger domain found in Zinc finger CCCH-type with G patch ...
 55-74 3.96e-04

Zinc finger domain; This is a zinc finger domain found in Zinc finger CCCH-type with G patch domain-containing proteins such as ZIP. Functional studies indicate that ZIP specifically targets EGFR and represses its transcription, and that the zinc finger and the coiled-coil domains are central to that process.


:

Pssm-ID: 465719 [Multi-domain]  Cd Length: 19  Bit Score: 38.17  E-value: 3.96e-04
                          10        20
                  ....*....|....*....|
gi 2420985043  55 CRFFQQGNsCRAGDTCTFLH 74
Cdd:pfam18345   1 CKFFLKGR-CRYGDKCRFAH 19
 
Name Accession Description Interval E-value
zf-CHY pfam05495
CHY zinc finger; This family of domains are likely to bind to zinc ions. They contain many ...
 772-835 1.72e-12

CHY zinc finger; This family of domains are likely to bind to zinc ions. They contain many conserved cysteine and histidine residues. We have named this domain after the N-terminal motif CXHY. This domain can be found in isolation in some proteins, but is also often associated with pfam00097. One of the proteins in this family is a mitochondrial intermembrane space protein called Hot13. This protein is involved in the assembly of small TIM complexes.


Pssm-ID: 461665  Cd Length: 75  Bit Score: 63.53  E-value: 1.72e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2420985043 772 CKHFRkSTRWLRFPCCGKTFPCVTCHDEKEDhEHE----YAQIMLCGHCSKEQRISKAeqsgpCVGCG 835
Cdd:pfam05495   1 CKHYH-RNCKLRCPCCGKWYPCRLCHDEVED-EHPldryAVTEMLCMLCDTEQPVAVL-----CGNCG 61
COG4357 COG4357
Uncharacterized conserved protein, contains Zn-finger domain of CHY type [Function unknown];
782-837 6.18e-10

Uncharacterized conserved protein, contains Zn-finger domain of CHY type [Function unknown];


Pssm-ID: 443492  Cd Length: 107  Bit Score: 57.24  E-value: 6.18e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2420985043 782 LRFPCCGKTFPCVTCHDEKEDHEHEY-------AQIMLCGHCSKEQRISKAEQSGPCVGCGMQ 837
Cdd:COG4357    30 IKFACCGKYYPCYRCHEELADHEAEPwprerfdEKAVLCGVCGTELTINEYLEADSCPACGAA 92
zf_CCCH_4 pfam18345
Zinc finger domain; This is a zinc finger domain found in Zinc finger CCCH-type with G patch ...
 55-74 3.96e-04

Zinc finger domain; This is a zinc finger domain found in Zinc finger CCCH-type with G patch domain-containing proteins such as ZIP. Functional studies indicate that ZIP specifically targets EGFR and represses its transcription, and that the zinc finger and the coiled-coil domains are central to that process.


Pssm-ID: 465719 [Multi-domain]  Cd Length: 19  Bit Score: 38.17  E-value: 3.96e-04
                          10        20
                  ....*....|....*....|
gi 2420985043  55 CRFFQQGNsCRAGDTCTFLH 74
Cdd:pfam18345   1 CKFFLKGR-CRYGDKCRFAH 19
ZnF_C3H1 smart00356
zinc finger;
53-76 9.29e-04

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 37.22  E-value: 9.29e-04
                           10        20
                   ....*....|....*....|....
gi 2420985043   53 VVCRFFQQGNsCRAGDTCTFLHID 76
Cdd:smart00356   5 ELCKFFKRGY-CPRGDRCKFAHPL 27
 
Name Accession Description Interval E-value
zf-CHY pfam05495
CHY zinc finger; This family of domains are likely to bind to zinc ions. They contain many ...
 772-835 1.72e-12

CHY zinc finger; This family of domains are likely to bind to zinc ions. They contain many conserved cysteine and histidine residues. We have named this domain after the N-terminal motif CXHY. This domain can be found in isolation in some proteins, but is also often associated with pfam00097. One of the proteins in this family is a mitochondrial intermembrane space protein called Hot13. This protein is involved in the assembly of small TIM complexes.


Pssm-ID: 461665  Cd Length: 75  Bit Score: 63.53  E-value: 1.72e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2420985043 772 CKHFRkSTRWLRFPCCGKTFPCVTCHDEKEDhEHE----YAQIMLCGHCSKEQRISKAeqsgpCVGCG 835
Cdd:pfam05495   1 CKHYH-RNCKLRCPCCGKWYPCRLCHDEVED-EHPldryAVTEMLCMLCDTEQPVAVL-----CGNCG 61
COG4357 COG4357
Uncharacterized conserved protein, contains Zn-finger domain of CHY type [Function unknown];
782-837 6.18e-10

Uncharacterized conserved protein, contains Zn-finger domain of CHY type [Function unknown];


Pssm-ID: 443492  Cd Length: 107  Bit Score: 57.24  E-value: 6.18e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2420985043 782 LRFPCCGKTFPCVTCHDEKEDHEHEY-------AQIMLCGHCSKEQRISKAEQSGPCVGCGMQ 837
Cdd:COG4357    30 IKFACCGKYYPCYRCHEELADHEAEPwprerfdEKAVLCGVCGTELTINEYLEADSCPACGAA 92
zf_CCCH_4 pfam18345
Zinc finger domain; This is a zinc finger domain found in Zinc finger CCCH-type with G patch ...
 55-74 3.96e-04

Zinc finger domain; This is a zinc finger domain found in Zinc finger CCCH-type with G patch domain-containing proteins such as ZIP. Functional studies indicate that ZIP specifically targets EGFR and represses its transcription, and that the zinc finger and the coiled-coil domains are central to that process.


Pssm-ID: 465719 [Multi-domain]  Cd Length: 19  Bit Score: 38.17  E-value: 3.96e-04
                          10        20
                  ....*....|....*....|
gi 2420985043  55 CRFFQQGNsCRAGDTCTFLH 74
Cdd:pfam18345   1 CKFFLKGR-CRYGDKCRFAH 19
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
53-74 6.25e-04

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 37.94  E-value: 6.25e-04
                          10        20
                  ....*....|....*....|..
gi 2420985043  53 VVCRFFQQGNSCRAGDTCTFLH 74
Cdd:pfam00642   4 ELCRFFLRTGYCKYGDRCKFAH 25
ZnF_C3H1 smart00356
zinc finger;
53-76 9.29e-04

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 37.22  E-value: 9.29e-04
                           10        20
                   ....*....|....*....|....
gi 2420985043   53 VVCRFFQQGNsCRAGDTCTFLHID 76
Cdd:smart00356   5 ELCKFFKRGY-CPRGDRCKFAHPL 27
zf-CCCH_4 pfam18044
CCCH-type zinc finger; This short zinc binding domain has the pattern of three cysteines and ...
 53-74 2.99e-03

CCCH-type zinc finger; This short zinc binding domain has the pattern of three cysteines and one histidine to coordinate the zinc ion. This domain is found in a wide variety of proteins such as E3 ligases.


Pssm-ID: 465626  Cd Length: 22  Bit Score: 35.64  E-value: 2.99e-03
                          10        20
                  ....*....|....*....|..
gi 2420985043  53 VVCRFFQQGnSCRAGDTCTFLH 74
Cdd:pfam18044   1 RLCRYFQKG-GCRYGDNCRFSH 21
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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