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Conserved domains on  [gi|2459716595|gb|KAJ7001458|]
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actin-depolymerizing factor 5 [Populus alba x Populus x berolinensis]

Protein Classification

actin-depolymerizing factor 5( domain architecture ID 10791535)

actin-depolymerizing factor 5 (ADF-5) participates in drought stress by regulating stomatal closure, and may also serve as a potential downstream target of the drought stress/ABA signaling pathway via members of the ABF/AREB transcription factors family

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03216 PLN03216
actin depolymerizing factor; Provisional
 3-143 3.26e-107

actin depolymerizing factor; Provisional


:

Pssm-ID: 178755  Cd Length: 141  Bit Score: 301.07  E-value: 3.26e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459716595   3 MAFKMATTGMWVTDECKNSFHEMKWRKVHRYIVFKIDEKSRLVTVDKVGGPGEGYDDLAASLPDDDCRYAVFDFDFVTVD 82
Cdd:PLN03216    1 MAFKMATTGMWVTDECKNSFMEMKWKKVHRYIVFKIDEKSRKVTVDKVGGPGESYDDLAASLPTDDCRYAVFDFDFVTVD 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2459716595  83 NCRKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLEGVHYELQATDPTEMGFDLIRDRAK 143
Cdd:PLN03216   81 NCRKSKIFFIAWSPEASRIRAKMLYATSKDGLRRVLDGVHYELQATDPTEMGFDVIRDRAK 141
 
Name Accession Description Interval E-value
PLN03216 PLN03216
actin depolymerizing factor; Provisional
 3-143 3.26e-107

actin depolymerizing factor; Provisional


Pssm-ID: 178755  Cd Length: 141  Bit Score: 301.07  E-value: 3.26e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459716595   3 MAFKMATTGMWVTDECKNSFHEMKWRKVHRYIVFKIDEKSRLVTVDKVGGPGEGYDDLAASLPDDDCRYAVFDFDFVTVD 82
Cdd:PLN03216    1 MAFKMATTGMWVTDECKNSFMEMKWKKVHRYIVFKIDEKSRKVTVDKVGGPGESYDDLAASLPTDDCRYAVFDFDFVTVD 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2459716595  83 NCRKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLEGVHYELQATDPTEMGFDLIRDRAK 143
Cdd:PLN03216   81 NCRKSKIFFIAWSPEASRIRAKMLYATSKDGLRRVLDGVHYELQATDPTEMGFDVIRDRAK 141
ADF_cofilin_like cd11286
Cofilin, Destrin, and related actin depolymerizing factors; Actin depolymerization factor ...
 10-142 7.25e-61

Cofilin, Destrin, and related actin depolymerizing factors; Actin depolymerization factor/cofilin-like domains (ADF domains) are present in a family of essential eukaryotic actin regulatory proteins. These proteins enhance the turnover rate of actin, and interact with actin monomers (G-actin) as well as actin filaments (F-actin), typically with a preference for ADP-G-actin subunits. The basic function of cofilin is to promote disassembly of aged actin filaments. Vertebrates have three isoforms of cofilin: cofilin-1 (Cfl1, non-muscle cofilin), cofilin-2 (muscle cofilin), and ADF (destrin). When bound to actin monomers, cofilins inhibit their spontaneous exchange of nucleotides. The cooperative binding to (aged) ADP-F-actin induces a local change in the actin filament structure and further promotes aging.


Pssm-ID: 200442  Cd Length: 133  Bit Score: 183.53  E-value: 7.25e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459716595  10 TGMWVTDECKNSFHEMKWRKVHRYIVFKIDEKSRLVTVDKVGGPGEGYDDLAASLPDDDCRYAVFDFDFVTVDNCRKSKI 89
Cdd:cd11286     1 SGVKVSDECITAFNELKLKKKHKYIIFKISDDKKEIVVEKVGERDASYDDFLEKLPENECRYAVYDFEYETKDGGKRSKL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2459716595  90 FFIAWAPTASRIRAKMLYATSKDGLRRVLEGVHYELQATDPTEMGFDLIRDRA 142
Cdd:cd11286    81 VFISWCPDTAPIKSKMLYASSKDALKKKLNGIKKEIQATDLSELSEEEILEKL 133
ADF smart00102
Actin depolymerisation factor/cofilin -like domains; Severs actin filaments and binds to actin ...
 16-143 3.50e-50

Actin depolymerisation factor/cofilin -like domains; Severs actin filaments and binds to actin monomers.


Pssm-ID: 214516  Cd Length: 127  Bit Score: 156.29  E-value: 3.50e-50
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459716595   16 DECKNSFHEMKWRKVHRYIVFKIDEKSRLVTVDKVGGPGEGYDDLAASLPDDDCRYAVFDFDFVTvDNCRKSKIFFIAWA 95
Cdd:smart00102   1 EDCKEAFNELKKKRKHSAIIFKIDKDNEEIVVEEVGSTEDSYDEFVEELPEDECRYALYDYKFTT-EESKKSKIVFIFWS 79

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 2459716595   96 PTASRIRAKMLYATSKDGLRRVLEGVHYELQATDPTEMGFDLIRDRAK 143
Cdd:smart00102  80 PDGAPVKSKMLYASSKDTLKKELGGIQVEVQATDEDDLDEEALKEKLK 127
Cofilin_ADF pfam00241
Cofilin/tropomyosin-type actin-binding protein; Severs actin filaments and binds to actin ...
 18-140 3.73e-46

Cofilin/tropomyosin-type actin-binding protein; Severs actin filaments and binds to actin monomers.


Pssm-ID: 459727  Cd Length: 123  Bit Score: 145.79  E-value: 3.73e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459716595  18 CKNSFHEMKWRKVHRYIVFKIDEKSRLVTVDKVGGPGEGYDDLAASLPDDDCRYAVFDFDFVTVDNCRKSKIFFIAWAPT 97
Cdd:pfam00241   1 CKEAYQELRSDKKTNWIIFKIDDDKEEIVVEETGEGGLSYDEFLEELPDDEPRYAVYRFEYTHDDGSKRSKLVFITWCPD 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 2459716595  98 ASRIRAKMLYATSKDGLRRVLEGVHYELQATDPTEMGFDLIRD 140
Cdd:pfam00241  81 GAPIKRKMLYASSKAALKRELKGIHVEIQATDPSELTEEEILE 123
 
Name Accession Description Interval E-value
PLN03216 PLN03216
actin depolymerizing factor; Provisional
 3-143 3.26e-107

actin depolymerizing factor; Provisional


Pssm-ID: 178755  Cd Length: 141  Bit Score: 301.07  E-value: 3.26e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459716595   3 MAFKMATTGMWVTDECKNSFHEMKWRKVHRYIVFKIDEKSRLVTVDKVGGPGEGYDDLAASLPDDDCRYAVFDFDFVTVD 82
Cdd:PLN03216    1 MAFKMATTGMWVTDECKNSFMEMKWKKVHRYIVFKIDEKSRKVTVDKVGGPGESYDDLAASLPTDDCRYAVFDFDFVTVD 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2459716595  83 NCRKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLEGVHYELQATDPTEMGFDLIRDRAK 143
Cdd:PLN03216   81 NCRKSKIFFIAWSPEASRIRAKMLYATSKDGLRRVLDGVHYELQATDPTEMGFDVIRDRAK 141
ADF_cofilin_like cd11286
Cofilin, Destrin, and related actin depolymerizing factors; Actin depolymerization factor ...
 10-142 7.25e-61

Cofilin, Destrin, and related actin depolymerizing factors; Actin depolymerization factor/cofilin-like domains (ADF domains) are present in a family of essential eukaryotic actin regulatory proteins. These proteins enhance the turnover rate of actin, and interact with actin monomers (G-actin) as well as actin filaments (F-actin), typically with a preference for ADP-G-actin subunits. The basic function of cofilin is to promote disassembly of aged actin filaments. Vertebrates have three isoforms of cofilin: cofilin-1 (Cfl1, non-muscle cofilin), cofilin-2 (muscle cofilin), and ADF (destrin). When bound to actin monomers, cofilins inhibit their spontaneous exchange of nucleotides. The cooperative binding to (aged) ADP-F-actin induces a local change in the actin filament structure and further promotes aging.


Pssm-ID: 200442  Cd Length: 133  Bit Score: 183.53  E-value: 7.25e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459716595  10 TGMWVTDECKNSFHEMKWRKVHRYIVFKIDEKSRLVTVDKVGGPGEGYDDLAASLPDDDCRYAVFDFDFVTVDNCRKSKI 89
Cdd:cd11286     1 SGVKVSDECITAFNELKLKKKHKYIIFKISDDKKEIVVEKVGERDASYDDFLEKLPENECRYAVYDFEYETKDGGKRSKL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2459716595  90 FFIAWAPTASRIRAKMLYATSKDGLRRVLEGVHYELQATDPTEMGFDLIRDRA 142
Cdd:cd11286    81 VFISWCPDTAPIKSKMLYASSKDALKKKLNGIKKEIQATDLSELSEEEILEKL 133
ADF smart00102
Actin depolymerisation factor/cofilin -like domains; Severs actin filaments and binds to actin ...
 16-143 3.50e-50

Actin depolymerisation factor/cofilin -like domains; Severs actin filaments and binds to actin monomers.


Pssm-ID: 214516  Cd Length: 127  Bit Score: 156.29  E-value: 3.50e-50
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459716595   16 DECKNSFHEMKWRKVHRYIVFKIDEKSRLVTVDKVGGPGEGYDDLAASLPDDDCRYAVFDFDFVTvDNCRKSKIFFIAWA 95
Cdd:smart00102   1 EDCKEAFNELKKKRKHSAIIFKIDKDNEEIVVEEVGSTEDSYDEFVEELPEDECRYALYDYKFTT-EESKKSKIVFIFWS 79

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 2459716595   96 PTASRIRAKMLYATSKDGLRRVLEGVHYELQATDPTEMGFDLIRDRAK 143
Cdd:smart00102  80 PDGAPVKSKMLYASSKDTLKKELGGIQVEVQATDEDDLDEEALKEKLK 127
Cofilin_ADF pfam00241
Cofilin/tropomyosin-type actin-binding protein; Severs actin filaments and binds to actin ...
 18-140 3.73e-46

Cofilin/tropomyosin-type actin-binding protein; Severs actin filaments and binds to actin monomers.


Pssm-ID: 459727  Cd Length: 123  Bit Score: 145.79  E-value: 3.73e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459716595  18 CKNSFHEMKWRKVHRYIVFKIDEKSRLVTVDKVGGPGEGYDDLAASLPDDDCRYAVFDFDFVTVDNCRKSKIFFIAWAPT 97
Cdd:pfam00241   1 CKEAYQELRSDKKTNWIIFKIDDDKEEIVVEETGEGGLSYDEFLEELPDDEPRYAVYRFEYTHDDGSKRSKLVFITWCPD 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 2459716595  98 ASRIRAKMLYATSKDGLRRVLEGVHYELQATDPTEMGFDLIRD 140
Cdd:pfam00241  81 GAPIKRKMLYASSKAALKRELKGIHVEIQATDPSELTEEEILE 123
ADF_gelsolin cd00013
Actin depolymerization factor/cofilin- and gelsolin-like domains; Actin depolymerization ...
 32-129 1.46e-22

Actin depolymerization factor/cofilin- and gelsolin-like domains; Actin depolymerization factor/cofilin-like domains are present in a family of essential eukaryotic actin regulatory proteins; these proteins enhance the turnover rate of actin and interact with actin monomers as well as actin filaments.


Pssm-ID: 200435  Cd Length: 97  Bit Score: 85.21  E-value: 1.46e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459716595  32 RYIVFKIDEKSRLVtvdKVGGPGEGY-DDLAASLPDDDCRYAVFDFDFVTVDNCRkSKIFFIAWAPTASRIRAKMLYATS 110
Cdd:cd00013     1 DWVLFKVDAKKEEI---VVGSTGAGFlDEFLEELPEDDPRYAFYRFKYPHSDDKR-SKFVFISWIPDGVSIKQKMVYATN 76

                          90
                  ....*....|....*....
gi 2459716595 111 KDGLRRVLEGVHYELQATD 129
Cdd:cd00013    77 KQTLKEALFGLAVPVQIRD 95
PTZ00152 PTZ00152
cofilin/actin-depolymerizing factor 1-like protein; Provisional
 10-121 4.45e-18

cofilin/actin-depolymerizing factor 1-like protein; Provisional


Pssm-ID: 173441  Cd Length: 122  Bit Score: 74.60  E-value: 4.45e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459716595  10 TGMWVTDECKNSFHEMKWRKVHRYIVFKIDEKSRLVTVDkvgGPGEGYDDLAASLPDDD---CRYAVFDfdfvtvdncRK 86
Cdd:PTZ00152    3 SGIRVNDNCVTEFNNMKIRKTCRWIIFVIENCEIIIHSK---GATTTLTELVGSIDKNDkiqCAYVVFD---------AV 70

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2459716595  87 SKIFFIAWAPTASRIRAKMLYATSKDGLRRVLEGV 121
Cdd:PTZ00152   71 NKIHFFMYARESSNSRDRMTYASSKQALLKKIEGV 105
ADF_Twf-C_like cd11284
C-terminal ADF domain of twinfilin and related proteins; Actin depolymerization factor ...
 3-140 2.78e-14

C-terminal ADF domain of twinfilin and related proteins; Actin depolymerization factor/cofilin-like domains (ADF domains) are present in a family of essential eukaryotic actin regulatory proteins. Twinfilin contains two ADF domains, and inhibits the assembly of actin filaments by strongly interacting with monomeric ADP-actin (ADP-G-actin) in a 1:1 stochiometry (with it's C-terminal ADF domain, Twf-C) and inhibiting the actin monomer's nucleotide exchange. Mammalian twinfilin may also cap the barbed ends of F-actin filaments and prevent further assembly (or disassembly), in a process which requires both ADF domains. The N-terminal ADF domain (Twf-N) binds G-actin with a lower affinity than Twf-C; Twf-C can also bind F-actin. During capping, Twf-N may interact with the terminal actin subunit, and Twf-C may bind between two adjacent subunits at the side of the filament.


Pssm-ID: 200440  Cd Length: 132  Bit Score: 64.95  E-value: 2.78e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459716595   3 MAFKMattgmwvTDECKNSFHEMKwRKVHRYIVFKID---EKSRLVTVDKVGGPgegyDDLAASLPDDDCRYAVFDFDfv 79
Cdd:cd11284     3 VAFPV-------SEEAKDALSELA-SGGVNLVQLSIDlenETIELVSSSSISIP----DDLSSLIPSDHPRYHFYRYP-- 68

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2459716595  80 tvdNCRKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLEGvHYE------LQATDPTEMGFDLIRD 140
Cdd:cd11284    69 ---HTYLSSVVFIYSCPSGSKVKERMLYASSKSGLLNHAED-EGKieidkkIEIGDPDELTESFLSD 131
ADF_GMF-beta_like cd11283
ADF-homology domain of glia maturation factor beta and related proteins; Actin ...
 14-119 1.17e-11

ADF-homology domain of glia maturation factor beta and related proteins; Actin depolymerization factor/cofilin-like domains (ADF domains) are present in a family of essential eukaryotic actin regulatory proteins. Most of these proteins enhance the turnover rate of actin and interact with actin monomers as well as actin filaments. The glia maturation factor (GMF), however, does not bind actin but interacts with the Arp2/3 complex (which contains actin-related proteins, amongst others) and suppresses Arp2/3 activity, inducing the dissociation of branched daughter filaments from their mother filaments. This family includes both mammalian GMF isoforms, GMF-beta and GMF-gamma. GMF-beta regulates cellular growth, fission, differentiation and apoptosis. GMF-gamma is important in myeloid cell development and is an important regulator for cell migration and polarity in neutrophils.


Pssm-ID: 200439 [Multi-domain]  Cd Length: 122  Bit Score: 58.02  E-value: 1.17e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459716595  14 VTDECKNSFHEMKWRK--VHRYIVFKIDEKSRLVTVD---KVGGPgegyDDLAASLPDDDCRYAVFDFDFVTVDNcRKS- 87
Cdd:cd11283     2 ISDEVKEALKKFRFRKskANAALILKIDKEKQEIVVDeelEDISI----EELAEELPEHSPRFVLYSYKMKHDDG-RISy 76

                          90       100       110
                  ....*....|....*....|....*....|..
gi 2459716595  88 KIFFIAWAPTASRIRAKMLYATSKDGLRRVLE 119
Cdd:cd11283    77 PLVLIYWSPQGCSPELQMLYAGAKELLVKEAE 108
ADF_Twf-N_like cd11285
N-terminal ADF domain of twinfilin and related proteins; Actin depolymerization factor ...
 10-133 1.76e-09

N-terminal ADF domain of twinfilin and related proteins; Actin depolymerization factor/cofilin-like domains (ADF domains) are present in a family of essential eukaryotic actin regulatory proteins. Twinfilin contains two ADF domains, and inhibits the assembly of actin filaments by strongly interacting with monomeric ADP-actin (ADP-G-actin) in a 1:1 stochiometry (with it's C-terminal ADF domain, Twf-C) and inhibiting the actin monomer's nucleotide exchange. Mammalian twinfilin may also cap the barbed ends of F-actin filaments and prevent further assembly (or disassembly), in a process which requires both ADF domains. The N-terminal ADF domain (Twf-N) binds G-actin with a lower affinity than Twf-C; Twf-C can also bind F-actin. During capping, Twf-N may interact with the terminal actin subunit, and Twf-C may bind between two adjacent subunits at the side of the filament.


Pssm-ID: 200441  Cd Length: 139  Bit Score: 52.64  E-value: 1.76e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459716595  10 TGMWVTDECKNSFHEMKWRKVHRYIVFKIDEKSrLVTVDKVGGPGEGYDDLAA----SLPDDDCRYAVFDFDfvtvDNCR 85
Cdd:cd11285     2 SGITASEELLDAFKSAKSSGSVRAIKITIENEE-LVPDATIETTGSWEQDFDLlvlpLLEEKEPCYILYRLD----SKSA 76

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 2459716595  86 KSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLEGVH--YELQATDPTEM 133
Cdd:cd11285    77 GYEWVFISFVPDSAPVRQKMLYASTRATLKRELGSNHikDELFATELEEL 126
ADF_coactosin_like cd11282
Coactosin-like members of the ADF homology domain family; Actin depolymerization factor ...
 33-133 7.81e-05

Coactosin-like members of the ADF homology domain family; Actin depolymerization factor/cofilin-like domains (ADF domains) are present in a family of essential eukaryotic actin regulatory proteins. Many of these proteins enhance the turnover rate of actin and interact with actin monomers as well as actin filaments. The function of coactosins is not well understood. They appear to interfere with the capping of actin filaments in Dictyostelium, and may not be able to bind monomeric globular actin. A role for coactosins as chaperones stabilizing 5-lipoxygenase (5LO) has been suggested; 5LO plays a crucial role in leukotriene synthesis.


Pssm-ID: 200438  Cd Length: 114  Bit Score: 39.54  E-value: 7.81e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459716595  33 YIVFKIDEKSRLVtvdkVGGPGEGY-DDLAASLPDDDCRYAVFDFDFvTVDNCRKSKIFFIAWAPTASRIRAKMLYATSK 111
Cdd:cd11282    18 WVLLGYESSNTLV----LRGSGSGGiDELKAQLPDDEVLFGYVRITL-GDGESKRSKFVFITWIGENVSVLRRAKVSVHK 92

                          90       100
                  ....*....|....*....|..
gi 2459716595 112 DGLRRVLEGVHYELQATDPTEM 133
Cdd:cd11282    93 GDVKEVLSPFHVELTASSKDEL 114
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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