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Conserved domains on  [gi|2462481542|gb|KAJ7428985|]
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calcium homeostasis endoplasmic reticulum protein-like protein [Willisornis vidua]

Protein Classification

SWAP domain-containing protein( domain architecture ID 10652672)

SWAP domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SWAP smart00648
Suppressor-of-White-APricot splicing regulator; domain present in regulators which are ...
 13-65 1.17e-21

Suppressor-of-White-APricot splicing regulator; domain present in regulators which are responsible for pre-mRNA splicing processes


:

Pssm-ID: 197818 [Multi-domain]  Cd Length: 54  Bit Score: 80.71  E-value: 1.17e-21
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 2462481542   13 RNVIDKLAQFVARNGPEFEKMTMEKQKENPKFSFLFGGD-FYGYYKYKLALEQQ 65
Cdd:smart00648   1 LDIIDKTAQFVARNGPEFEAKLMERERNNPQFDFLKPNDpYHAYYRKKLAEYRQ 54
 
Name Accession Description Interval E-value
SWAP smart00648
Suppressor-of-White-APricot splicing regulator; domain present in regulators which are ...
 13-65 1.17e-21

Suppressor-of-White-APricot splicing regulator; domain present in regulators which are responsible for pre-mRNA splicing processes


Pssm-ID: 197818 [Multi-domain]  Cd Length: 54  Bit Score: 80.71  E-value: 1.17e-21
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 2462481542   13 RNVIDKLAQFVARNGPEFEKMTMEKQKENPKFSFLFGGD-FYGYYKYKLALEQQ 65
Cdd:smart00648   1 LDIIDKTAQFVARNGPEFEAKLMERERNNPQFDFLKPNDpYHAYYRKKLAEYRQ 54
Surp pfam01805
Surp module; This domain is also known as the SWAP domain. SWAP stands for ...
 14-61 2.72e-21

Surp module; This domain is also known as the SWAP domain. SWAP stands for Suppressor-of-White-APricot. It has been suggested that these domains may be RNA binding.


Pssm-ID: 460339 [Multi-domain]  Cd Length: 52  Bit Score: 79.48  E-value: 2.72e-21
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 2462481542  14 NVIDKLAQFVARNGPEFEKMTMEKQKENPKFSFLFGGD--FYGYYKYKLA 61
Cdd:pfam01805   1 DIIKKTAQFVARNGPEFEALLMEREERNPQFDFLFDPDdpLHAYYRWKLE 50
 
Name Accession Description Interval E-value
SWAP smart00648
Suppressor-of-White-APricot splicing regulator; domain present in regulators which are ...
 13-65 1.17e-21

Suppressor-of-White-APricot splicing regulator; domain present in regulators which are responsible for pre-mRNA splicing processes


Pssm-ID: 197818 [Multi-domain]  Cd Length: 54  Bit Score: 80.71  E-value: 1.17e-21
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 2462481542   13 RNVIDKLAQFVARNGPEFEKMTMEKQKENPKFSFLFGGD-FYGYYKYKLALEQQ 65
Cdd:smart00648   1 LDIIDKTAQFVARNGPEFEAKLMERERNNPQFDFLKPNDpYHAYYRKKLAEYRQ 54
Surp pfam01805
Surp module; This domain is also known as the SWAP domain. SWAP stands for ...
 14-61 2.72e-21

Surp module; This domain is also known as the SWAP domain. SWAP stands for Suppressor-of-White-APricot. It has been suggested that these domains may be RNA binding.


Pssm-ID: 460339 [Multi-domain]  Cd Length: 52  Bit Score: 79.48  E-value: 2.72e-21
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 2462481542  14 NVIDKLAQFVARNGPEFEKMTMEKQKENPKFSFLFGGD--FYGYYKYKLA 61
Cdd:pfam01805   1 DIIKKTAQFVARNGPEFEALLMEREERNPQFDFLFDPDdpLHAYYRWKLE 50
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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