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hypothetical protein H312_00208 [Anncaliia algerae PRA339]
ribosomal eL8 family protein( domain architecture ID 1903236)
ribosomal eL8 family protein such as large ribosomal subunit protein eL8 and H/ACA ribonucleoprotein complex subunit 2
List of domain hits
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Name | Accession | Description | Interval | E-value | ||
SNU13 super family | cl42391 | U4/U6.U5 small nuclear ribonucleoprotein SNU13; U4/U6.U5 small nuclear ribonucleoprotein SNU13, ... |
3-78 | 3.12e-15 | ||
U4/U6.U5 small nuclear ribonucleoprotein SNU13; U4/U6.U5 small nuclear ribonucleoprotein SNU13, also known as NHP2-like protein 1 or U4/U6.U5 tri-snRNP 15.5 kDa protein, is a component of the spliceosome B complex, involved in pre-mRNA splicing. It binds to the 5'-stem-loop of U4 snRNA. The actual alignment was detected with superfamily member cd21104: Pssm-ID: 455736 Cd Length: 122 Bit Score: 65.81 E-value: 3.12e-15
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Name | Accession | Description | Interval | E-value | |||
SNU13 | cd21104 | U4/U6.U5 small nuclear ribonucleoprotein SNU13; U4/U6.U5 small nuclear ribonucleoprotein SNU13, ... |
3-78 | 3.12e-15 | |||
U4/U6.U5 small nuclear ribonucleoprotein SNU13; U4/U6.U5 small nuclear ribonucleoprotein SNU13, also known as NHP2-like protein 1 or U4/U6.U5 tri-snRNP 15.5 kDa protein, is a component of the spliceosome B complex, involved in pre-mRNA splicing. It binds to the 5'-stem-loop of U4 snRNA. Pssm-ID: 411046 Cd Length: 122 Bit Score: 65.81 E-value: 3.12e-15
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Ribosomal_L7Ae | pfam01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from ... |
26-106 | 1.87e-10 | |||
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118. Pssm-ID: 426153 [Multi-domain] Cd Length: 95 Bit Score: 52.98 E-value: 1.87e-10
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Name | Accession | Description | Interval | E-value | |||
SNU13 | cd21104 | U4/U6.U5 small nuclear ribonucleoprotein SNU13; U4/U6.U5 small nuclear ribonucleoprotein SNU13, ... |
3-78 | 3.12e-15 | |||
U4/U6.U5 small nuclear ribonucleoprotein SNU13; U4/U6.U5 small nuclear ribonucleoprotein SNU13, also known as NHP2-like protein 1 or U4/U6.U5 tri-snRNP 15.5 kDa protein, is a component of the spliceosome B complex, involved in pre-mRNA splicing. It binds to the 5'-stem-loop of U4 snRNA. Pssm-ID: 411046 Cd Length: 122 Bit Score: 65.81 E-value: 3.12e-15
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Ribosomal_L7Ae | pfam01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from ... |
26-106 | 1.87e-10 | |||
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118. Pssm-ID: 426153 [Multi-domain] Cd Length: 95 Bit Score: 52.98 E-value: 1.87e-10
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Blast search parameters | ||||
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